Sulfurimonas autrotrophica gen. nov., sp. nov., a novel sulfur-oxidizing E-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 6, 2003, Pages 1801-1805

  Inagaki, Fumio ^a   Takai, Ken ^a   Kobayashi, Hideki ^a   Nealson, Kenneth H ^a,b   Horikoshi, Koki ^a  

^a JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^b UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; HYDROGEN; RNA 16S; SULFIDE; SULFUR; THIOSULFATE;

ARTICLE; BACTERIAL CELL; BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIUM ISOLATION; DEEP SEA; ELECTRON; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; HYDROTHERMAL VENT; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PH; PHYLOGENY; PRIORITY JOURNAL; SEDIMENT; SULFURIMONAS AUTOTROPHICA; TEMPERATURE DEPENDENCE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PROTEOBACTERIA; SULFURIMONAS; SULFURIMONAS AUTOTROPHICA;

EID: 0345328152     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02682-0     Document Type: Article

References (23)

1. Alain, K., Querellou, J., Lesongeur, F., Pignet, P., Crassous, P., Raguenes, G., Cueff, V. & Cambon-Bonavita, M.-A. (2002 . Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent. Int J Syst Evol Microbiol 52, 1317-1323.
2. Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C. R. & Wolfe, R. S. (1979). Methanogens: re-evaluation of a unique biological group. Microb Rev 43, 260-296.
3. Baross, J. A. (1995). Isolation, growth and maintenance of hyperthermophiles. In Archaea: a Laboratory Manual, Thermophiles, pp. 15-23. Edited by F. T. Robb & A. R. Place. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
4. Campbell, B. J., Jeanthon, C., Kostka, J. E., Luther, G. W., III & Cary, S. C. (2001). Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents. Appl Environ Microbiol 67, 4566-4572.
5. Corre, E., Reysenbach, A.-L. & Prieur, D. (2001). E-Proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. FEMS Microbiol Lett 205, 329-335.
6. DeLong, E. F. (1992). Archaea in coastal marine environments. Proc Natl Acad Sci U S A 89, 5685-5689.
7. Inagaki, F., Sakihama, Y., Inoue, A., Kato, C. & Horikoshi, K. (2002). Molecular phylogenetic analyses of reverse-transcribed bacterial rRNA obtained from desp-sea cold seep sediments. Environ Microbiol 4, 277-286.
8. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Mol Evol 16, 111-120.
9. Kostka, J. & Nealson, K. H. (1998). Isolation, cultivation and characterization of iron- and manganese-reducing bacteria. In Techniques in Microbial Ecology, pp. 58-78. Edited by R. S. Burlage, R. Atlas, D. Stahl, G. Geesey & G. Sayler. New York: Oxford University Press.
10. Lane, D. J. (1985). 16S/23S sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-176. Edited by E. Stackebrandt & M. Goodfellow. New York: Wiley.
11. Longnecker, K. & Reysenbach, A. (2001). Expansion of the geographic distribution of a novel lineage of E-Proteobacteria to a hydrothermal vent site on the Southern East Pacific Rise. FEMS Microbiol Ecol 35, 287-293.
12. Miroshnichenko, M. L., Kostrikina, N. A., L'Haridon, S., Jeanthon, C., Hippe, H., Stackebrandt, E. & Bonch-Osmolovskaya, E. A. (2002). Nautilia lithotrophica gen. nov., sp. nov., a thermophilic sulfur-reducing E-proteobacterium isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 52, 1299-1304.
13. Moyer, C. L., Dobbs, F. C. & Karl, D. M. (1995). Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol 61, 1555-1562.
14. Polz, M. F. & Cavanaugh, C. M. (1995). Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site. Proc Natl Acad Sci U S A 92, 7232-7236.
15. Porter, K. G. & Feig, Y. S. (1980). The use of DAPI for identifying and counting microflora. Limnol Oceanogr 25, 943-948.
16. Reysenbach, A. L., Longnecker, K. & Kirshtein, J. (2000). Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Appl Environ Microbiol 66, 3798-3806.
17. Takai, K. & Fujiwara, Y. (2002). Hydrothermal vents: biodiversity in deep-sea hydrothermal vents. In Encyclopedia of Environmental Microbiology, pp. 1604-1617. Edited by G. Bitton. New York: Wiley.
18. Takai, K., Hirayama, H., Sakihama, Y., Inagaki, F., Yamato, Y. & Horikoshi, K. (2002). Isolation and metabolic characteristics of previously uncultured members of the order Aquificales in a subsurface gold mine. Appl Environ Microbiol 68, 3046-3054.
19. Takai, K., Inagaki, F., Nakagawa, S., Hirayama, H., Nunoura, T., Sako, Y., Nealson, K. H. & Horikoshi, K. (2003a). Isolation and phylogenetic diversity of members of previously uncultivated E-Proteobacteria in deep-sea hydrothermal fields. FEMS Microbiol Lett 218, 167-174.
20. Takai, K., Kobayashi, H., Nealson, K. H. & Horikoshi, K. (2003b). Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 53, 839-846.
21. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTALwindows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
22. Timmer-ten Hoor, A. (1981). Cell yield and bioenergetics of Thiomicrospira denitrificans compared with Thiobacillus denitrificans. Antonie van Leeuwenhoek 47, 231-243.
23. Zillig, W., Holz, I., Janekovic, D. & 7 other authors (1990). Hyperthermus butylicus, a hyperthermophilic sulfur-reducing archaebacterium that ferments peptides. J Bacteriol 172, 3959-3965.