메뉴 건너뛰기




Volumn 5, Issue 3, 2011, Pages 414-426

Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries

Author keywords

chimney; deep sea; fosmid; metagenomics; pyrosequencing

Indexed keywords

CARBON; NITROGEN; RNA 16S; SULFUR;

EID: 79951810387     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2010.144     Document Type: Article
Times cited : (147)

References (39)
  • 1
    • 44649142702 scopus 로고    scopus 로고
    • 2 acquisition by the CBB cycle
    • DOI 10.1093/jxb/erm297
    • Badger MR, Bek EJ. (2008). Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle. J Exp Bot 59: 1525-1541. (Pubitemid 351786561)
    • (2008) Journal of Experimental Botany , vol.59 , Issue.7 , pp. 1525-1541
    • Badger, M.R.1    Bek, E.J.2
  • 2
    • 37249052742 scopus 로고    scopus 로고
    • A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in archaea
    • DOI 10.1126/science.1149976
    • Berg IA, Kockelkorn D, Buckel W, Fuchs G. (2007). A 3-hydroxypropionate/ 4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea. Science 318: 1782-1786. (Pubitemid 350274390)
    • (2007) Science , vol.318 , Issue.5857 , pp. 1782-1786
    • Berg, I.A.1    Kockelkorn, D.2    Buckel, W.3    Fuchs, G.4
  • 3
    • 48749117805 scopus 로고    scopus 로고
    • Metagenomic signatures of the peru margin subseafloor biosphere show a genetically distinct environment
    • Biddle JF, Fitz-Gibbon S, Schuster SC, Brenchley JE, House CH. (2008). Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proc Natl Acad Sci USA 105: 10583-10588.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 10583-10588
    • Biddle, J.F.1    Fitz-Gibbon, S.2    Schuster, S.C.3    Brenchley, J.E.4    House, C.H.5
  • 4
    • 72649088719 scopus 로고    scopus 로고
    • Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
    • Brazelton WJ, Baross JA. (2009). Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. ISME J 3: 1420-1424.
    • (2009) ISME J , vol.3 , pp. 1420-1424
    • Brazelton, W.J.1    Baross, J.A.2
  • 5
    • 8144229173 scopus 로고    scopus 로고
    • Abundance of reverse tricarboxylic acid cycle genes in free-living microorganisms at deep-sea hydrothermal vents
    • DOI 10.1128/AEM.70.10.6282-6289.2004
    • Campbell BJ, Cary SC. (2004). Abundance of reverse tricarboxylic acid cycle genes in free-living microorganisms at deep-sea hydrothermal vents. Appl Environ Microbiol 70: 6282-6289. (Pubitemid 39471879)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.10 , pp. 6282-6289
    • Campbell, B.J.1    Gary, S.C.2
  • 9
    • 56249085962 scopus 로고    scopus 로고
    • Metagenome analysis of an extreme microbial symbiosis reveals eurythermal adaptation and metabolic flexibility
    • Grzymski JJ, Murray AE, Campbell BJ, Kaplarevic M, Gao GR, Lee C et al. (2008). Metagenome analysis of an extreme microbial symbiosis reveals eurythermal adaptation and metabolic flexibility. Proc Natl Acad Sci USA 105: 17516-17521.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 17516-17521
    • Grzymski, J.J.1    Murray, A.E.2    Campbell, B.J.3    Kaplarevic, M.4    Gao, G.R.5    Lee, C.6
  • 10
    • 0030821694 scopus 로고    scopus 로고
    • Towards the phylogeny of APS reductases and sirohaem sulfite reductases in sulfate-reducing and sulfur-oxidizing prokaryotes
    • Hipp WM, Pott AS, Thum-Schmitz N, Faath I, Dahl C, Truper HG. (1997). Towards the phylogeny of APS reductases and sirohaem sulfite reductases in sulfatereducing and sulfur-oxidizing prokaryotes. Microbiology 143: 2891-2902. (Pubitemid 27437905)
    • (1997) Microbiology , vol.143 , Issue.9 , pp. 2891-2902
    • Hipp, W.M.1    Pott, A.S.2    Thum-Schmitz, N.3    Faath, I.4    Dahl, C.5    Truper, H.G.6
  • 12
    • 0036211208 scopus 로고    scopus 로고
    • Temporal changes in archaeal diversity and chemistry in a mid-ocean ridge subseafloor habitat
    • DOI 10.1128/AEM.68.4.1585-1594.2002
    • Huber JA, Butterfield DA, Baross JA. (2002). Temporal changes in archaeal diversity and chemistry in a midocean ridge subseafloor habitat. Appl Environ Microbiol 68: 1585-1594. (Pubitemid 34279962)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.4 , pp. 1585-1594
    • Huber, J.A.1    Butterfield, D.A.2    Baross, J.A.3
  • 14
    • 0028864918 scopus 로고
    • Helium and carbon geochemistry of hydrothermal fluids from the Mid-Okinawa Trough Back Arc Basin, southwest of Japan
    • Ishibashi J, Sano Y,Wakita H, Gamo T, TsutsumiM, Sakai H. (1995). Helium and carbon geochemistry of hydrothermal fluids from the Mid-Okinawa Trough Back Arc Basin, southwest of Japan. Chem Geol 123: 1-15.
    • (1995) Chem Geol , vol.123 , pp. 1-15
    • Ishibashi, J.1    Sano Ywakita, H.2    Gamo, T.3    Tsutsumim Sakai, H.4
  • 15
    • 33846476676 scopus 로고    scopus 로고
    • Distribution, diversity and ecology of aerobic CO-oxidizing bacteria
    • DOI 10.1038/nrmicro1595, PII NRMICRO1595
    • King GM, Weber CF. (2007). Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nat Rev Microbiol 5: 107-118. (Pubitemid 46151869)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.2 , pp. 107-118
    • King, G.M.1    Weber, C.F.2
  • 16
    • 34347214255 scopus 로고    scopus 로고
    • Growth history of a diffusely venting sulfide structure from the Juan de Fuca Ridge: A petrological and geochemical study
    • Kristall B, Kelly D, Hannington M, Delaney J. (2006). Growth history of a diffusely venting sulfide structure from the Juan de Fuca Ridge: a petrological and geochemical study. Geochem Geophys Geosyst 7: 30.
    • (2006) Geochem Geophys Geosyst , vol.7 , pp. 30
    • Kristall, B.1    Kelly, D.2    Hannington, M.3    Delaney, J.4
  • 17
    • 0842303733 scopus 로고    scopus 로고
    • Autotrophic ammonia oxidation in a deep-sea hydrothermal plume
    • Lam P, Cowen JP, Jones RD. (2004). Autotrophic ammonia oxidation in a deep-sea hydrothermal plume. FEMS Microbiol Ecol 47: 191-206.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 191-206
    • Lam, P.1    Cowen, J.P.2    Jones, R.D.3
  • 19
    • 0346195660 scopus 로고    scopus 로고
    • Phylogenetic diversity of nitrogenase (nifH) genes in deep-sea and hydrothermal vent environments of the Juan de Fuca Ridge
    • DOI 10.1128/AEM.69.2.960-970.2003
    • Mehta MP, Butterfield DA, Baross JA. (2003). Phylogenetic diversity of nitrogenase (nifH) genes in deep-sea and hydrothermal vent environments of the Juan de Fuca Ridge. Appl Environ Microbiol 69: 960-970. (Pubitemid 36204825)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.2 , pp. 960-970
    • Mehta, M.P.1    Butterfield, D.A.2    Baross, J.A.3
  • 20
    • 58049127278 scopus 로고    scopus 로고
    • An uncultivated crenarchaeota contains functional bacteriochlorophyll a synthase
    • Meng J, Wang F, Zheng Y, Peng X, Zhou H, Xiao X. (2009). An uncultivated crenarchaeota contains functional bacteriochlorophyll a synthase. ISME J 3: 106-116.
    • (2009) ISME J , vol.3 , pp. 106-116
    • Meng, J.1    Wang, F.2    Zheng, Y.3    Peng, X.4    Zhou, H.5    Xiao, X.6
  • 21
    • 34548688408 scopus 로고    scopus 로고
    • Insights into the genome of large sulfur bacteria revealed by analysis of single filaments
    • Mussmann M, Hu FZ, Richter M, de Beer D, Preisler A, Jorgensen BB et al. (2007). Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. PLoS Biol 5: e230.
    • (2007) PLoS Biol , vol.5
    • Mussmann, M.1    Hu, F.Z.2    Richter, M.3    De Beer, D.4    Preisler, A.5    Jorgensen, B.B.6
  • 22
    • 45149091572 scopus 로고    scopus 로고
    • Deep-sea vent chemoautotrophs: Diversity, biochemistry and ecological significance
    • DOI 10.1111/j.1574-6941.2008.00502.x
    • Nakagawa S, Takai K. (2008). Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance. FEMS Microbiol Ecol 65: 1-14. (Pubitemid 351832109)
    • (2008) FEMS Microbiology Ecology , vol.65 , Issue.1 , pp. 1-14
    • Nakagawa, S.1    Takai, K.2
  • 23
  • 25
    • 0043022217 scopus 로고    scopus 로고
    • Toxic vents and DNA damage: First evidence from a naturally contaminated deep-sea environment
    • DOI 10.1016/S0166-445X(03)00010-9
    • Pruski AM, Dixon DR. (2003). Toxic vents and DNA damage: first evidence from a naturally contaminated deep-sea environment. Aquat Toxicol 64: 1-13. (Pubitemid 37323800)
    • (2003) Aquatic Toxicology , vol.64 , Issue.1 , pp. 1-13
    • Pruski, A.M.1    Dixon, D.R.2
  • 26
    • 0001076645 scopus 로고
    • Low 15N/14Nin hydrothermal vent animals: Ecological implications
    • Rau GH. (1981). Low 15N/14Nin hydrothermal vent animals: ecological implications. Nature 289: 484-485.
    • (1981) Nature , vol.289 , pp. 484-485
    • Rau, G.H.1
  • 27
    • 0037052564 scopus 로고    scopus 로고
    • Merging genomes with geochemistry in hydrothermal ecosystems
    • DOI 10.1126/science.1072483
    • Reysenbach AL, Shock E. (2002). Merging genomes with geochemistry in hydrothermal ecosystems. Science 296: 1077-1082. (Pubitemid 34517117)
    • (2002) Science , vol.296 , Issue.5570 , pp. 1077-1082
    • Reysenbach, A.-L.1    Shock, E.2
  • 28
    • 0038654460 scopus 로고    scopus 로고
    • Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney
    • Schrenk MO, Kelley DS, Delaney JR, Baross JA. (2003). Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney. Appl Environ Microbiol 69: 3580-3592. (Pubitemid 36693370)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.6 , pp. 3580-3592
    • Schrenk, M.O.1    Kelley, D.S.2    Delaney, J.R.3    Baross, J.A.4
  • 29
  • 30
    • 0344631752 scopus 로고    scopus 로고
    • Sulfide-quinone reductase from Rhodobacter capsulatus: Requirement for growth, periplasmic localization, and extension of gene sequence analysis
    • Schutz M, Maldener I, Griesbeck C, Hauska G. (1999). Sulfide-quinone reductase from Rhodobacter capsulatus: requirement for growth, periplasmic localization, and extension of gene sequence analysis. J Bacteriol 181: 6516-6523. (Pubitemid 29512964)
    • (1999) Journal of Bacteriology , vol.181 , Issue.20 , pp. 6516-6523
    • Schutz, M.1    Maldener, I.2    Griesbeck, C.3    Hauska, G.4
  • 32
    • 0034069967 scopus 로고    scopus 로고
    • Halothiobacillus kellyi sp. nov., a mesophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a shallow- water hydrothermal vent in the Aegean Sea, and emended description of the genus Halothiobacillus
    • Sievert SM, Heidorn T, Kuever J. (2000). Halothiobacillus kellyi sp. nov., a mesophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a shallow-water hydrothermal vent in the Aegean Sea, and emended description of the genus Halothiobacillus. Int J Syst Evol Microbiol 50: 1229-1237. (Pubitemid 30333481)
    • (2000) International Journal of Systematic and Evolutionary Microbiology , vol.50 , Issue.3 , pp. 1229-1237
    • Sievert, S.M.1    Heidorn, T.2    Kuever, J.3
  • 35
    • 63849227208 scopus 로고    scopus 로고
    • GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent
    • Wang F, Zhou H, Meng J, Peng X, Jiang L, Sun P et al. (2009). GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent. Proc Natl Acad Sci USA 106: 4840-4845.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 4840-4845
    • Wang, F.1    Zhou, H.2    Meng, J.3    Peng, X.4    Jiang, L.5    Sun, P.6
  • 36
    • 33144458254 scopus 로고    scopus 로고
    • Evidence for autotrophy via the reverse tricarboxylic acid cycle in the marine magnetotactic coccus strain MC-1
    • DOI 10.1128/AEM.72.2.1322-1329.2006
    • Williams TJ, Zhang CL, Scott JH, Bazylinski DA. (2006). Evidence for autotrophy via the reverse tricarboxylic acid cycle in the marine magnetotactic coccus strain MC-1. Appl Environ Microbiol 72: 1322-1329. (Pubitemid 43271243)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.2 , pp. 1322-1329
    • Williams, T.J.1    Zhang, C.L.2    Scott, J.H.3    Bazylinski, D.A.4
  • 38
    • 34548216842 scopus 로고    scopus 로고
    • Life in hot carbon monoxide: The complete genome sequence of Carboxydothermus hydrogenoformans Z-2901
    • Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ et al. (2005). Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. PLoS Genet 1: e65.
    • (2005) PLoS Genet , vol.1
    • Wu, M.1    Ren, Q.2    Durkin, A.S.3    Daugherty, S.C.4    Brinkac, L.M.5    Dodson, R.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.