-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. (1990). Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
33751059692
-
The marine viromes of four oceanic regions
-
Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C et al. (2006). The marine viromes of four oceanic regions. PLoS Biol 4: e368.
-
(2006)
PLoS Biol
, vol.4
-
-
Angly, F.E.1
Felts, B.2
Breitbart, M.3
Salamon, P.4
Edwards, R.A.5
Carlson, C.6
-
4
-
-
38449087833
-
Metagenomic characterization of Chesapeake Bay virioplankton
-
Bench SR, Hanson TE, Williamson KE, Ghosh D, Radosovich M, Wang K et al. (2007). Metagenomic characterization of Chesapeake Bay virioplankton. Appl Environ Microbiol 73: 7629-7641.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 7629-7641
-
-
Bench, S.R.1
Hanson, T.E.2
Williamson, K.E.3
Ghosh, D.4
Radosovich, M.5
Wang, K.6
-
5
-
-
1642363900
-
Diversity and population structure of a near-shore marine-sediment viral community
-
Breitbart M, Felts B, Kelley S, Mahaffy JM, Nulton J, Salamon P et al. (2004). Diversity and population structure of a near-shore marine-sediment viral community. Proc R Soc Lond B Biol Sci 271: 565-574.
-
(2004)
Proc R Soc Lond B Biol Sci
, vol.271
, pp. 565-574
-
-
Breitbart, M.1
Felts, B.2
Kelley, S.3
Mahaffy, J.M.4
Nulton, J.5
Salamon, P.6
-
6
-
-
0141891348
-
Metagenomic analyses of an uncultured viral community from human feces
-
Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, Salamon P et al. (2003). Metagenomic analyses of an uncultured viral community from human feces. J Bacteriol 185: 6220-6223.
-
(2003)
J Bacteriol
, vol.185
, pp. 6220-6223
-
-
Breitbart, M.1
Hewson, I.2
Felts, B.3
Mahaffy, J.M.4
Nulton, J.5
Salamon, P.6
-
7
-
-
0037195156
-
Genomic analysis of uncultured marine viral communities
-
Breitbart M, Salamon P, Andresen B, Mahaffy JM, Segall AM, Mead D et al. (2002). Genomic analysis of uncultured marine viral communities. Proc Natl Acad Sci USA 99: 14250-14255.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14250-14255
-
-
Breitbart, M.1
Salamon, P.2
Andresen, B.3
Mahaffy, J.M.4
Segall, A.M.5
Mead, D.6
-
8
-
-
3142514466
-
The impact of prophages on bacterial chromosomes
-
Canchaya C, Fournous G, Brussow H. (2004). The impact of prophages on bacterial chromosomes. Mol Microbiol 53: 9-18.
-
(2004)
Mol Microbiol
, vol.53
, pp. 9-18
-
-
Canchaya, C.1
Fournous, G.2
Brussow, H.3
-
9
-
-
22744452053
-
Population fitness and the regulation of Escherichia coli genes by bacterial viruses
-
Chen Y, Golding I, Sawai S, Guo L, Cox EC. (2005). Population fitness and the regulation of Escherichia coli genes by bacterial viruses. PLoS Biol 3: e229.
-
(2005)
PLoS Biol
, vol.3
-
-
Chen, Y.1
Golding, I.2
Sawai, S.3
Guo, L.4
Cox, E.C.5
-
10
-
-
0031799299
-
Seasonal abundance of lysogenic bacteria in a subtropical estuary
-
Cochran PK, Paul JH. (1998). Seasonal abundance of lysogenic bacteria in a subtropical estuary. Appl Environ Microbiol 64: 2308.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2308
-
-
Cochran, P.K.1
Paul, J.H.2
-
11
-
-
0000867798
-
Submarine Thermal Springs on the Galapagos Rift
-
Corliss JB, Dymond J, Gordon LI, Edmond JM, Herzen RPV, Ballard RD et al. (1979). Submarine Thermal Springs on the Galapagos Rift. Science 203: 1073-1083.
-
(1979)
Science
, vol.203
, pp. 1073-1083
-
-
Corliss, J.B.1
Dymond, J.2
Gordon, L.I.3
Edmond, J.M.4
Herzen, R.P.V.5
Ballard, R.D.6
-
12
-
-
0028981101
-
Dynamics of a lytic virus infecting the photosynthetic marine picoflagellate Micromonas pusilla
-
Cottrell MT, Suttle CA. (1995). Dynamics of a lytic virus infecting the photosynthetic marine picoflagellate Micromonas pusilla. Limnol Oceanogr 40: 730-739.
-
(1995)
Limnol Oceanogr
, vol.40
, pp. 730-739
-
-
Cottrell, M.T.1
Suttle, C.A.2
-
13
-
-
33745513227
-
Metagenomic analysis of coastal RNA virus communities
-
Culley AI, Lang AS, Suttle CA. (2006). Metagenomic analysis of coastal RNA virus communities. Science 312: 1795-1798.
-
(2006)
Science
, vol.312
, pp. 1795-1798
-
-
Culley, A.I.1
Lang, A.S.2
Suttle, C.A.3
-
15
-
-
0031955518
-
Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
-
Ewing B, Hiller L, Wendl MC, Green P. (1998). Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res 8: 175-185.
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hiller, L.2
Wendl, M.C.3
Green, P.4
-
16
-
-
0033056146
-
Characterization of microbial communities using randomly amplified polymorphic DNA (RAPD)
-
Franklin RB, Taylor DR, Mills AL. (1999). Characterization of microbial communities using randomly amplified polymorphic DNA (RAPD). J Microbiol Methods 35: 225-235.
-
(1999)
J Microbiol Methods
, vol.35
, pp. 225-235
-
-
Franklin, R.B.1
Taylor, D.R.2
Mills, A.L.3
-
17
-
-
33846551381
-
Biology's next revolution
-
Goldenfeld N, Woese C. (2007). Biology's next revolution. Nature 445: 369.
-
(2007)
Nature
, vol.445
, pp. 369
-
-
Goldenfeld, N.1
Woese, C.2
-
18
-
-
19944428969
-
Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy
-
Hou S, Saw JH, Lee KS, Freitas TA, Belisle C, Kawarabayasi Y et al. (2004). Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy. Proc Natl Acad Sci USA 101: 18036-18041.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 18036-18041
-
-
Hou, S.1
Saw, J.H.2
Lee, K.S.3
Freitas, T.A.4
Belisle, C.5
Kawarabayasi, Y.6
-
19
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
Huber JA, Mark Welch DB, Morrison HG, Huse SM, Neal PR, Butterfield DA et al. (2007). Microbial population structures in the deep marine biosphere. Science 318: 97-100.
-
(2007)
Science
, vol.318
, pp. 97-100
-
-
Huber, J.A.1
Mark Welch, D.B.2
Morrison, H.G.3
Huse, S.M.4
Neal, P.R.5
Butterfield, D.A.6
-
20
-
-
0028573701
-
Seasonal and diel abundance of viruses and occurence of lysogeny/bacteriocinogeny in the marine environment
-
Jiang SC, Paul JH. (1994). Seasonal and diel abundance of viruses and occurence of lysogeny/bacteriocinogeny in the marine environment. Mar Ecol Prog Ser 104: 163-172.
-
(1994)
Mar Ecol Prog Ser
, vol.104
, pp. 163-172
-
-
Jiang, S.C.1
Paul, J.H.2
-
21
-
-
0030303985
-
Occurrence of lysogenic bacteria in marine microbial communities as determined by prophage induction
-
Jiang SC, Paul JH. (1996). Occurrence of lysogenic bacteria in marine microbial communities as determined by prophage induction. Mar Ecol Prog Ser 142: 27-38.
-
(1996)
Mar Ecol Prog Ser
, vol.142
, pp. 27-38
-
-
Jiang, S.C.1
Paul, J.H.2
-
22
-
-
0036436134
-
Volcanoes, fluids, and life at mid-ocean ridge spreading centers
-
Kelley DS, Baross JA, Delaney JR. (2002). Volcanoes, fluids, and life at mid-ocean ridge spreading centers. Annu Rev Earth Planet Sci 30: 385-491.
-
(2002)
Annu Rev Earth Planet Sci
, vol.30
, pp. 385-491
-
-
Kelley, D.S.1
Baross, J.A.2
Delaney, J.R.3
-
23
-
-
33846050063
-
Measuring bacterial biomass production and growth rates from leucine incorporation in natural aquatic environments
-
Kirchman D. (2001). Measuring bacterial biomass production and growth rates from leucine incorporation in natural aquatic environments. Methods Microbiol 30: 227-237.
-
(2001)
Methods Microbiol
, vol.30
, pp. 227-237
-
-
Kirchman, D.1
-
25
-
-
38949206411
-
Comparison of lysogeny (prophage induction) in heterotrophic bacterial and Synechococcus populations in the Gulf of Mexico and Mississippi river plume
-
Long A, McDaniel LD, Mobberley J, Paul JH. (2007). Comparison of lysogeny (prophage induction) in heterotrophic bacterial and Synechococcus populations in the Gulf of Mexico and Mississippi river plume. ISME J 2: 132.
-
(2007)
ISME J
, vol.2
, pp. 132
-
-
Long, A.1
McDaniel, L.D.2
Mobberley, J.3
Paul, J.H.4
-
27
-
-
33750967028
-
Novel uncultured Epsilonproteo-bacteria dominate a filamentous sulphur mat from the 13°N hydrothermal vent field, East Pacific Rise
-
Moussard H, Corre E, Cambon-Bonavita M-A, Fouquet Y, Jeanthon C. (2006). Novel uncultured Epsilonproteo-bacteria dominate a filamentous sulphur mat from the 13°N hydrothermal vent field, East Pacific Rise. FEMS Microbiol Ecol 58: 449-463.
-
(2006)
FEMS Microbiol Ecol
, vol.58
, pp. 449-463
-
-
Moussard, H.1
Corre, E.2
Cambon-Bonavita, M.-A.3
Fouquet, Y.4
Jeanthon, C.5
-
28
-
-
25144503993
-
Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field
-
Nakagawa S, Takai K, Inagaki F, Hirayama H, Nunoura T, Horikoshi K et al. (2005). Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field. Environ Microbiol 7: 1619-1632.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1619-1632
-
-
Nakagawa, S.1
Takai, K.2
Inagaki, F.3
Hirayama, H.4
Nunoura, T.5
Horikoshi, K.6
-
29
-
-
34547549547
-
Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens
-
Nakagawa S, Takaki Y, Shimamura S, Reysenbach AL, Takai K, Horikoshi K. (2007). Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens. Proc Natl Acad Sci USA 104: 12146-12150.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12146-12150
-
-
Nakagawa, S.1
Takaki, Y.2
Shimamura, S.3
Reysenbach, A.L.4
Takai, K.5
Horikoshi, K.6
-
30
-
-
1842524072
-
Phylogenetic diversity of sulfate-reducing prokaryotes in active deep-sea hydrothermal vent chimney structures
-
Nakagawa T, Nakagawa S, Inagaki F, Takai K, Horikoshi K. (2004). Phylogenetic diversity of sulfate-reducing prokaryotes in active deep-sea hydrothermal vent chimney structures. FEMS Microbiol Lett 232: 145-152.
-
(2004)
FEMS Microbiol Lett
, vol.232
, pp. 145-152
-
-
Nakagawa, T.1
Nakagawa, S.2
Inagaki, F.3
Takai, K.4
Horikoshi, K.5
-
31
-
-
12544256650
-
Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments
-
Nercessian O, Bienvenu N, Moreira D, Prieur D, Jeanthon C. (2005). Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments. Environ Microbiol 7: 118-132.
-
(2005)
Environ Microbiol
, vol.7
, pp. 118-132
-
-
Nercessian, O.1
Bienvenu, N.2
Moreira, D.3
Prieur, D.4
Jeanthon, C.5
-
32
-
-
0036490233
-
Lysogeny and lytic viral production during a bloom of the cyanobacterium Synechococcus spp
-
Ortmann AC, Lawrence JE, Suttle CA. (2002). Lysogeny and lytic viral production during a bloom of the cyanobacterium Synechococcus spp. Microb Ecol 43: 225-231.
-
(2002)
Microb Ecol
, vol.43
, pp. 225-231
-
-
Ortmann, A.C.1
Lawrence, J.E.2
Suttle, C.A.3
-
33
-
-
20844432946
-
High abundances of viruses in a deep-sea hydrothermal vent system indicates viral mediated microbial mortality
-
Ortmann AC, Suttle CA. (2005). High abundances of viruses in a deep-sea hydrothermal vent system indicates viral mediated microbial mortality. Deep Sea Res Part I Oceanogr Res Pap 52: 1515-1527.
-
(2005)
Deep Sea Res Part I Oceanogr Res Pap
, vol.52
, pp. 1515-1527
-
-
Ortmann, A.C.1
Suttle, C.A.2
-
34
-
-
33845505324
-
The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2
-
Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA et al. (2006). The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. PLoS Biol 4: e383.
-
(2006)
PLoS Biol
, vol.4
-
-
Scott, K.M.1
Sievert, S.M.2
Abril, F.N.3
Ball, L.A.4
Barrett, C.J.5
Blake, R.A.6
-
35
-
-
0036197501
-
Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature
-
Short SM, Suttle CA. (2002). Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature. Appl Environ Microbiol 68: 1290-1296.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1290-1296
-
-
Short, S.M.1
Suttle, C.A.2
-
37
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored 'rare biosphere'
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR et al. (2006). Microbial diversity in the deep sea and the underexplored 'rare biosphere'. Proc Natl Acad Sci USA 103: 12115-12120.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
-
38
-
-
0035956962
-
A novel microbial habitat in the mid-ocean ridge subseafloor
-
Summit M, Baross JA. (2001). A novel microbial habitat in the mid-ocean ridge subseafloor. Proc Natl Acad Sci USA 98: 2158-2163.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 2158-2163
-
-
Summit, M.1
Baross, J.A.2
-
40
-
-
12244251437
-
Mercury adaptation among bacteria from a deep-sea hydrothermal vent
-
Vetriani C, Chew YS, Miller SM, Yagi J, Coombs J, Lutz RA et al. (2005). Mercury adaptation among bacteria from a deep-sea hydrothermal vent. Appl Environ Microbiol 71: 220-226.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 220-226
-
-
Vetriani, C.1
Chew, Y.S.2
Miller, S.M.3
Yagi, J.4
Coombs, J.5
Lutz, R.A.6
-
41
-
-
0042572533
-
Lysogeny and virus-induced mortality of bacterioplankton in surface, deep, and anoxic marine waters
-
Weinbauer MG, Brettar I, Hofle MG. (2003). Lysogeny and virus-induced mortality of bacterioplankton in surface, deep, and anoxic marine waters. Limnol Oceanogr 48: 1457-1465.
-
(2003)
Limnol Oceanogr
, vol.48
, pp. 1457-1465
-
-
Weinbauer, M.G.1
Brettar, I.2
Hofle, M.G.3
-
42
-
-
0029995714
-
Potential significance of lysogeny to bacteriophage production and bacterial mortality in coastal waters of the Gulf of Mexico
-
Weinbauer MG, Suttle CA. (1996). Potential significance of lysogeny to bacteriophage production and bacterial mortality in coastal waters of the Gulf of Mexico. Appl Environ Microbiol 62: 4374-4380.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 4374-4380
-
-
Weinbauer, M.G.1
Suttle, C.A.2
-
43
-
-
0033588321
-
Lysogeny and prophage induction in coastal and offshore bacterial communities
-
Weinbauer MG, Suttle CA. (1999). Lysogeny and prophage induction in coastal and offshore bacterial communities. Aquat Microb Ecol 18: 217-225.
-
(1999)
Aquat Microb Ecol
, vol.18
, pp. 217-225
-
-
Weinbauer, M.G.1
Suttle, C.A.2
-
44
-
-
0031734452
-
Bacteriophage diversity in the North Sea
-
Wichels A, Biel SS, Gelderblom HR, Brinkhoff T, Muyzer G, Schutt C. (1998). Bacteriophage diversity in the North Sea. Appl Environ Microbiol 64: 4128-4133.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4128-4133
-
-
Wichels, A.1
Biel, S.S.2
Gelderblom, H.R.3
Brinkhoff, T.4
Muyzer, G.5
Schutt, C.6
-
45
-
-
0028247937
-
Bacterial-viruses in coastal seawater - lytic rather than lysogenic production
-
Wilcox RM, Fuhrman JA. (1994). Bacterial-viruses in coastal seawater - lytic rather than lysogenic production. Mar Ecol Progr Sers 114: 35-45.
-
(1994)
Mar Ecol Progr Sers
, vol.114
, pp. 35-45
-
-
Wilcox, R.M.1
Fuhrman, J.A.2
-
46
-
-
0242657555
-
Sampling natural viral communities from soil for culture-independent analyses
-
Williamson KE, Wommack KE, Radosevich M. (2003). Sampling natural viral communities from soil for culture-independent analyses. Appl Environ Microbiol 69: 6628-6633.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6628-6633
-
-
Williamson, K.E.1
Wommack, K.E.2
Radosevich, M.3
-
47
-
-
0036727216
-
Seasonal variation in lysogeny as depicted by prophage induction in Tampa Bay, Florida
-
Williamson SJ, Houchin LA, McDaniel L, Paul JH. (2002). Seasonal variation in lysogeny as depicted by prophage induction in Tampa Bay, Florida. Appl Environ Microbiol 68: 4307-4314.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4307-4314
-
-
Williamson, S.J.1
Houchin, L.A.2
McDaniel, L.3
Paul, J.H.4
-
48
-
-
4243071637
-
Nutrient stimulation of lytic phage production in bacterial populations of the Gulf of Mexico
-
Williamson SJ, Paul JH. (2004). Nutrient stimulation of lytic phage production in bacterial populations of the Gulf of Mexico. Aquat Microb Ecol 36: 9-17.
-
(2004)
Aquat Microb Ecol
, vol.36
, pp. 9-17
-
-
Williamson, S.J.1
Paul, J.H.2
-
49
-
-
43049113858
-
Randomly amplified polymorphic DNA (RAPD)-PCR as a tool for assessment of marine viral richness
-
Winget DM, Wommack E. (2008). Randomly amplified polymorphic DNA (RAPD)-PCR as a tool for assessment of marine viral richness. Appl Environ Microbiol 74: 2612-2618.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2612-2618
-
-
Winget, D.M.1
Wommack, E.2
-
52
-
-
5644246454
-
An instrument for collecting discrete large-volume water samples suitable for ecological studies of microorganisms
-
Wommack KE, Williamson SJ, Sundbergh A, Helton RR, Glazer BT, Portune K et al. (2004). An instrument for collecting discrete large-volume water samples suitable for ecological studies of microorganisms. Deep Sea Res Part I Oceanogr Res Pap 51: 1781-1792.
-
(2004)
Deep Sea Res Part I Oceanogr Res Pap
, vol.51
, pp. 1781-1792
-
-
Wommack, K.E.1
Williamson, S.J.2
Sundbergh, A.3
Helton, R.R.4
Glazer, B.T.5
Portune, K.6
|