-
1
-
-
0024475207
-
High abundance of viruses found in aquatic environments
-
Bergh, O., K. Y. Borsheim, G. Bratbak, and M. Heldal. 1989. High abundance of viruses found in aquatic environments. Nature 340:467-468.
-
(1989)
Nature
, vol.340
, pp. 467-468
-
-
Bergh, O.1
Borsheim, K.Y.2
Bratbak, G.3
Heldal, M.4
-
3
-
-
33746039308
-
Induction of multiple prophages from a marine bacterium: A genomic approach
-
Chen, F., K. Wang, J. Stewart, and R. Belas. 2006. Induction of multiple prophages from a marine bacterium: a genomic approach. Appl. Environ. Microbiol. 72:4995-5001.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 4995-5001
-
-
Chen, F.1
Wang, K.2
Stewart, J.3
Belas, R.4
-
4
-
-
0036324056
-
High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
-
Connon, S. A., and S. J. Giovannoni. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68:3878-3885.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 3878-3885
-
-
Connon, S.A.1
Giovannoni, S.J.2
-
5
-
-
0041386044
-
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
-
Dufresne, A., M. Salanoubat, F. Partensky, F. Artiguenave, I. M. Axmann, V. Barbe, S. Duprat, M. Y. Galperin, E. V. Koonin, F. Le Gall, K. S. Makarova, M. Ostrowski, S. Oztas, C. Robert, I. B. Rogozin, D. J. Scanlan, N. T. de Marsac, J. Weissenbach, P. Wincker, Y. I. Wolf, and W. R. Hess. 2003. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc. Natl. Acad. Sci. USA 100:10020-10025.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 10020-10025
-
-
Dufresne, A.1
Salanoubat, M.2
Partensky, F.3
Artiguenave, F.4
Axmann, I.M.5
Barbe, V.6
Duprat, S.7
Galperin, M.Y.8
Koonin, E.V.9
Le Gall, F.10
Makarova, K.S.11
Ostrowski, M.12
Oztas, S.13
Robert, C.14
Rogozin, I.B.15
Scanlan, D.J.16
de Marsac, N.T.17
Weissenbach, J.18
Wincker, P.19
Wolf, Y.I.20
Hess, W.R.21
more..
-
6
-
-
0033542481
-
Marine viruses and their biogeochemical and ecological effects
-
Fuhrman, J. A. 1999. Marine viruses and their biogeochemical and ecological effects. Nature 399:541-548.
-
(1999)
Nature
, vol.399
, pp. 541-548
-
-
Fuhrman, J.A.1
-
7
-
-
23844446418
-
Genome streamlining in a cosmopolitan oceanic bacterium
-
Giovannoni, S. J., H. J. Tripp, S. Givan, M. Podar, K. L. Vergin, D. Baptista, L. Bibbs, J. Eads, T. H. Richardson, M. Noordewier, M. S. Rappe, J. M. Short, J. C. Carrington, and E. J. Mathur. 2005. Genome streamlining in a cosmopolitan oceanic bacterium. Science 309:1242-1245.
-
(2005)
Science
, vol.309
, pp. 1242-1245
-
-
Giovannoni, S.J.1
Tripp, H.J.2
Givan, S.3
Podar, M.4
Vergin, K.L.5
Baptista, D.6
Bibbs, L.7
Eads, J.8
Richardson, T.H.9
Noordewier, M.10
Rappe, M.S.11
Short, J.M.12
Carrington, J.C.13
Mathur, E.J.14
-
8
-
-
0141837820
-
Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments
-
Gonzalez, J. M., J. S. Covert, W. B. Whitman, J. R. Henriksen, F. Mayer, B. Scharf, R. Schmitt, A. Buchan, J. A. Fuhrman, R. P. Kiene, and M. A. Moran. 2003. Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. Int. J. Syst. Evol. Microbiol. 53:1261-1269.
-
(2003)
Int. J. Syst. Evol. Microbiol
, vol.53
, pp. 1261-1269
-
-
Gonzalez, J.M.1
Covert, J.S.2
Whitman, W.B.3
Henriksen, J.R.4
Mayer, F.5
Scharf, B.6
Schmitt, R.7
Buchan, A.8
Fuhrman, J.A.9
Kiene, R.P.10
Moran, M.A.11
-
9
-
-
33750457352
-
Bacterial taxa that limit sulfur flux from the ocean
-
Howard, E. C., J. R. Henriksen, A. Buchan, C. R. Reisch, H. Buergmann, R. Welsh, W. Y. Ye, J. M. Gonzalez, K. Mace, S. B. Joye, R. P. Kiene, W. B. Whitman, and M. A. Moran. 2006. Bacterial taxa that limit sulfur flux from the ocean. Science 314:649-652.
-
(2006)
Science
, vol.314
, pp. 649-652
-
-
Howard, E.C.1
Henriksen, J.R.2
Buchan, A.3
Reisch, C.R.4
Buergmann, H.5
Welsh, R.6
Ye, W.Y.7
Gonzalez, J.M.8
Mace, K.9
Joye, S.B.10
Kiene, R.P.11
Whitman, W.B.12
Moran, M.A.13
-
10
-
-
0031014707
-
Purification and characterization of VSH-1, a generalized transducing bacteriophage of Serpulina hyodysenteriae
-
Humphrey, S. B., T. B. Stanton, N. S. Jensen, and R. L. Zuerner. 1997. Purification and characterization of VSH-1, a generalized transducing bacteriophage of Serpulina hyodysenteriae. J. Bacteriol. 179:323-329.
-
(1997)
J. Bacteriol
, vol.179
, pp. 323-329
-
-
Humphrey, S.B.1
Stanton, T.B.2
Jensen, N.S.3
Zuerner, R.L.4
-
11
-
-
0031902076
-
Gene transfer by transduction in the marine environment
-
Jiang, S. C., and J. H. Paul. 1998. Gene transfer by transduction in the marine environment. Appl. Environ. Microbiol. 64:2780-2787.
-
(1998)
Appl. Environ. Microbiol
, vol.64
, pp. 2780-2787
-
-
Jiang, S.C.1
Paul, J.H.2
-
12
-
-
0030303985
-
Occurrence of lysogenic bacteria in marine microbial communities as determined by prophage induction
-
Jiang, S. C., and J. H. Paul. 1996. Occurrence of lysogenic bacteria in marine microbial communities as determined by prophage induction. Mar. Ecol. Prog. Ser. 142:27-38.
-
(1996)
Mar. Ecol. Prog. Ser
, vol.142
, pp. 27-38
-
-
Jiang, S.C.1
Paul, J.H.2
-
13
-
-
0031926253
-
Significance of lysogeny in the marine environment: Studies with isolates and a model of lysogenic phage production
-
Jiang, S. C., and J. H. Paul. 1998. Significance of lysogeny in the marine environment: studies with isolates and a model of lysogenic phage production. Microb. Ecol. 35:235-243.
-
(1998)
Microb. Ecol
, vol.35
, pp. 235-243
-
-
Jiang, S.C.1
Paul, J.H.2
-
14
-
-
84986815830
-
The measurement and distribution of dissolved nucleic-acids in aquatic environments
-
Karl, D. M., and M. D. Bailiff. 1989. The measurement and distribution of dissolved nucleic-acids in aquatic environments. Limnol. Oceanogr. 34:543-558.
-
(1989)
Limnol. Oceanogr
, vol.34
, pp. 543-558
-
-
Karl, D.M.1
Bailiff, M.D.2
-
15
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5:150-163.
-
(2004)
Brief. Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
16
-
-
0036154707
-
A bacterial signal transduction system controls genetic exchange and motility
-
Lang, A. S., and J. T. Beatty. 2002. A bacterial signal transduction system controls genetic exchange and motility. J. Bacteriol. 184:913-918.
-
(2002)
J. Bacteriol
, vol.184
, pp. 913-918
-
-
Lang, A.S.1
Beatty, J.T.2
-
17
-
-
0035038533
-
The gene transfer agent of Rhodobacter capsulatus and "constitutive transduction" in prokaryotes
-
Lang, A. S., and J. T. Beatty. 2001. The gene transfer agent of Rhodobacter capsulatus and "constitutive transduction" in prokaryotes. Arch. Microbiol. 175:241-249.
-
(2001)
Arch. Microbiol
, vol.175
, pp. 241-249
-
-
Lang, A.S.1
Beatty, J.T.2
-
18
-
-
0034681148
-
Genetic analysis of a bacterial genetic exchange element: The gene transfer agent of Rhodobacter capsulatus
-
Lang, A. S., and J. T. Beatty. 2000. Genetic analysis of a bacterial genetic exchange element: the gene transfer agent of Rhodobacter capsulatus. Proc. Natl. Acad. Sci. USA 97:859-864.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 859-864
-
-
Lang, A.S.1
Beatty, J.T.2
-
19
-
-
33846659065
-
Importance of widespread gene transfer agent genes in α-proteobacteria
-
Lang, A. S., and J. T. Beatty. 2007. Importance of widespread gene transfer agent genes in α-proteobacteria. Trends Microbiol. 15:54-62.
-
(2007)
Trends Microbiol
, vol.15
, pp. 54-62
-
-
Lang, A.S.1
Beatty, J.T.2
-
20
-
-
0036841204
-
Evolutionary implications of phylogenetic analyses of the gene transfer agent (GTA) of Rhodobacter capsulatus
-
Lang, A. S., T. A. Taylor, and J. T. Beatty. 2002. Evolutionary implications of phylogenetic analyses of the gene transfer agent (GTA) of Rhodobacter capsulatus. J. Mol. Evol. 55:534-543.
-
(2002)
J. Mol. Evol
, vol.55
, pp. 534-543
-
-
Lang, A.S.1
Taylor, T.A.2
Beatty, J.T.3
-
21
-
-
0016381336
-
Genetic recombination in Rhodopseudomonas capsulata
-
Marrs, B. 1974. Genetic recombination in Rhodopseudomonas capsulata. Proc. Natl. Acad. Sci. USA 71:971-973.
-
(1974)
Proc. Natl. Acad. Sci. USA
, vol.71
, pp. 971-973
-
-
Marrs, B.1
-
22
-
-
24644436925
-
Identification of genes of VSH-1, a prophage-like gene transfer agent of Brachyspira hyodysentetiae
-
Matson, E. G., M. G. Thompson, S. B. Humphrey, R. L. Zuerner, and T. B. Stanton. 2005. Identification of genes of VSH-1, a prophage-like gene transfer agent of Brachyspira hyodysentetiae. J. Bacteriol. 187:5885-5892.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5885-5892
-
-
Matson, E.G.1
Thompson, M.G.2
Humphrey, S.B.3
Zuerner, R.L.4
Stanton, T.B.5
-
23
-
-
34547150003
-
Ecological genomics of marine roseobacters
-
Moran, M. A., R. Belas, M. A. Schell, J. M. Gonzalez, F. Sun, S. Sun, B. J. Binder, J. Edmonds, W. Ye, B. Orcutt, E. C. Howard, C. Meile, W. Palefsky, A. Goesmann, Q. Ren, I. Paulsen, L. E. Ulrich, L. S. Thompson, E. Saunders, and A. Buchan. 2007. Ecological genomics of marine roseobacters. Appl. Environ. Microbiol. 73:4559-4569.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 4559-4569
-
-
Moran, M.A.1
Belas, R.2
Schell, M.A.3
Gonzalez, J.M.4
Sun, F.5
Sun, S.6
Binder, B.J.7
Edmonds, J.8
Ye, W.9
Orcutt, B.10
Howard, E.C.11
Meile, C.12
Palefsky, W.13
Goesmann, A.14
Ren, Q.15
Paulsen, I.16
Ulrich, L.E.17
Thompson, L.S.18
Saunders, E.19
Buchan, A.20
more..
-
24
-
-
19944408938
-
-
Moran, M. A., A. Buchan, J. M. Gonzalez, J. F. Heidelberg, W. B. Whitman, R. P. Kiene, J. R. Henriksen, G. M. King, R. Belas, C. Fuqua, L. Brinkac, M. Lewis, S. Johri, B. Weaver, G. Pai, J. A. Eisen, E. Rahe, W. M. Sheldon, W. Y. Ye, T. R. Miller, J. Carlton, D. A. Rasko, I. T. Paulsen, Q. H. Ren, S. C. Daugherty, R. T. Deboy, R. J. Dodson, A. S. Durkin, R. Madupu, W. C. Nelson, S. A. Sullivan, M. J. Rosovitz, D. H. Haft, J. Selengut, and N. Ward. 2004. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432:910-913.
-
Moran, M. A., A. Buchan, J. M. Gonzalez, J. F. Heidelberg, W. B. Whitman, R. P. Kiene, J. R. Henriksen, G. M. King, R. Belas, C. Fuqua, L. Brinkac, M. Lewis, S. Johri, B. Weaver, G. Pai, J. A. Eisen, E. Rahe, W. M. Sheldon, W. Y. Ye, T. R. Miller, J. Carlton, D. A. Rasko, I. T. Paulsen, Q. H. Ren, S. C. Daugherty, R. T. Deboy, R. J. Dodson, A. S. Durkin, R. Madupu, W. C. Nelson, S. A. Sullivan, M. J. Rosovitz, D. H. Haft, J. Selengut, and N. Ward. 2004. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432:910-913.
-
-
-
-
25
-
-
33751234806
-
Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
-
Polz, M. F., D. E. Hunt, S. P. Preheim, and D. M. Weinreich. 2006. Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Phil. Trans. R. Soc. B 361:2009-2021.
-
(2006)
Phil. Trans. R. Soc. B
, vol.361
, pp. 2009-2021
-
-
Polz, M.F.1
Hunt, D.E.2
Preheim, S.P.3
Weinreich, D.M.4
-
26
-
-
0025198355
-
Viral mortality of marine bacteria and cyanobacteria
-
Proctor, L. M., and J. A. Fuhrman. 1990. Viral mortality of marine bacteria and cyanobacteria. Nature 343:60-62.
-
(1990)
Nature
, vol.343
, pp. 60-62
-
-
Proctor, L.M.1
Fuhrman, J.A.2
-
27
-
-
0000828268
-
Genetic transfer in Desulfovibrio desulfuricans
-
Rapp, B. J., and J. D. Wall. 1987. Genetic transfer in Desulfovibrio desulfuricans. Proc. Natl. Acad. Sci. USA 84:9128-9130.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 9128-9130
-
-
Rapp, B.J.1
Wall, J.D.2
-
28
-
-
0028906055
-
Effects of suspended particulates on the frequency of transduction among Pseudomonas aeruginosa in a freshwater environment
-
Ripp, S., and R. V. Miller. 1995. Effects of suspended particulates on the frequency of transduction among Pseudomonas aeruginosa in a freshwater environment. Appl. Environ. Microbiol. 61:1214-1219.
-
(1995)
Appl. Environ. Microbiol
, vol.61
, pp. 1214-1219
-
-
Ripp, S.1
Miller, R.V.2
-
29
-
-
33947238287
-
-
Rusch, D. B., A. L. Halpern, G. Sutton, K. B. Heidelberg, S. Williamson, S. Yooseph, D. Y. Wu, J. A. Eisen, J. M. Hoffman, K. Remington, K. Beeson, B. Tran, H. Smith, H. Baden-Tillson, C. Stewart, J. Thorpe, J. Freeman, C. Andrews-Pfannkoch, J. E. Venter, K. Li, S. Kravitz, J. F. Heidelberg, T. Utterback, Y. H. Rogers, L. I. Falcon, V. Souza, G. Bonilla-Rosso, L. E. Eguiarte, D. M. Karl, S. Sathyendranath, T. Platt, E. Bermingham, V. Gallardo, G. Tamayo-Castillo, M. R. Ferrari, R. L. Strausberg, K. Nealson, R. Friedman, M. Frazier, and J. C. Venter. 2007. The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific. PloS Biol. 5:398-431.
-
Rusch, D. B., A. L. Halpern, G. Sutton, K. B. Heidelberg, S. Williamson, S. Yooseph, D. Y. Wu, J. A. Eisen, J. M. Hoffman, K. Remington, K. Beeson, B. Tran, H. Smith, H. Baden-Tillson, C. Stewart, J. Thorpe, J. Freeman, C. Andrews-Pfannkoch, J. E. Venter, K. Li, S. Kravitz, J. F. Heidelberg, T. Utterback, Y. H. Rogers, L. I. Falcon, V. Souza, G. Bonilla-Rosso, L. E. Eguiarte, D. M. Karl, S. Sathyendranath, T. Platt, E. Bermingham, V. Gallardo, G. Tamayo-Castillo, M. R. Ferrari, R. L. Strausberg, K. Nealson, R. Friedman, M. Frazier, and J. C. Venter. 2007. The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific. PloS Biol. 5:398-431.
-
-
-
-
30
-
-
33748637544
-
Membrane vesicles: An overlooked component of the matrices of biofjlms
-
Schooling, S. R., and T. J. Beveridge. 2006. Membrane vesicles: an overlooked component of the matrices of biofjlms. J. Bacteriol. 188:5945-5957.
-
(2006)
J. Bacteriol
, vol.188
, pp. 5945-5957
-
-
Schooling, S.R.1
Beveridge, T.J.2
-
31
-
-
0017406501
-
Gene transfer agent of Rhodopseudomonas capsulata - purification and characterization of its nucleic acid
-
Solioz, M., and B. Marrs. 1977. Gene transfer agent of Rhodopseudomonas capsulata - purification and characterization of its nucleic acid. Arch. Biochem. Biophys. 181:300-307.
-
(1977)
Arch. Biochem. Biophys
, vol.181
, pp. 300-307
-
-
Solioz, M.1
Marrs, B.2
-
32
-
-
0016720528
-
Release and uptake of gene transfer agent by Rhodopseudomonas capsulata
-
Solioz, M., H. C. Yen, and B. Marrs. 1975. Release and uptake of gene transfer agent by Rhodopseudomonas capsulata. J. Bacteriol. 123:651-657.
-
(1975)
J. Bacteriol
, vol.123
, pp. 651-657
-
-
Solioz, M.1
Yen, H.C.2
Marrs, B.3
-
33
-
-
0042208121
-
Detection of bacteriophage VSH-1 svp38 gene in Brachyspira spirochetes
-
Stanton, T. B., M. G. Thompson, S. B. Humphrey, and R. L. Zuerner. 2003. Detection of bacteriophage VSH-1 svp38 gene in Brachyspira spirochetes. FEMS Microbiol. Lett. 224:225-229.
-
(2003)
FEMS Microbiol. Lett
, vol.224
, pp. 225-229
-
-
Stanton, T.B.1
Thompson, M.G.2
Humphrey, S.B.3
Zuerner, R.L.4
-
34
-
-
21344461027
-
Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations
-
Sullivan, M. B., M. L. Coleman, P. Weigele, F. Rohwer, and S. W. Chisholm. 2005. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PloS Biol. 3:790-806.
-
(2005)
PloS Biol
, vol.3
, pp. 790-806
-
-
Sullivan, M.B.1
Coleman, M.L.2
Weigele, P.3
Rohwer, F.4
Chisholm, S.W.5
-
35
-
-
0027968068
-
Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
36
-
-
0033171508
-
Interaction between bacteriophage PBS1 and clay minerals and transduction of Bacillus subtilis by clay-phage complexes
-
Vettori, C., G. Stotzky, M. Yoder, and E. Gallon. 1999. Interaction between bacteriophage PBS1 and clay minerals and transduction of Bacillus subtilis by clay-phage complexes. Environ. Microbiol. 1:347-355.
-
(1999)
Environ. Microbiol
, vol.1
, pp. 347-355
-
-
Vettori, C.1
Stotzky, G.2
Yoder, M.3
Gallon, E.4
-
37
-
-
0016758481
-
Gene transfer agents, bacteriophages, and bacteriocins of Rhodopseudomonas capsulata
-
Wall, J. D., P. F. Weaver, and H. Gest. 1975. Gene transfer agents, bacteriophages, and bacteriocins of Rhodopseudomonas capsulata. Arch. Microbiol. 105:217-224.
-
(1975)
Arch. Microbiol
, vol.105
, pp. 217-224
-
-
Wall, J.D.1
Weaver, P.F.2
Gest, H.3
-
38
-
-
1942486000
-
Ecology of prokaryotic viruses
-
Weinbauer, M. G. 2004. Ecology of prokaryotic viruses. FEMS Microbiol. Rev. 28:127-181.
-
(2004)
FEMS Microbiol. Rev
, vol.28
, pp. 127-181
-
-
Weinbauer, M.G.1
-
39
-
-
0018391101
-
Characterization of the gene transfer agent made by an over-producer mutant of Rhodopseudomonas capsulata
-
Yen, H. C., N. T. Hu, and B. L. Marrs. 1979. Characterization of the gene transfer agent made by an over-producer mutant of Rhodopseudomonas capsulata. J. Mol. Biol. 131:157-168.
-
(1979)
J. Mol. Biol
, vol.131
, pp. 157-168
-
-
Yen, H.C.1
Hu, N.T.2
Marrs, B.L.3
|