Induction of prophages from deep-subseafloor bacteria

Environmental Microbiology Reports

Volumn 3, Issue 4, 2011, Pages 459-465

  Engelhardt, Tim ^a   Sahlberg, Monika ^a   Cypionka, Heribert ^a   Engelen, Bert ^a  

^a UNIVERSITY OF OLDENBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 80051928354     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2010.00232.x     Document Type: Article

References (29)

1. Batzke, A., Engelen, B., Sass, H., and Cypionka, H. (2007) Phylogenetic and physiological diversity of cultured deep-biosphere bacteria from equatorial Pacific Ocean and Peru Margin sediments. Geomicrobiol J 24: 261-273.
2. Biddle, J.F., Lipp, J.S., Lever, M.A., Lloyd, K.G., Sorensen, K.B., Anderson, R., etal. (2006) Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proc Natl Acad Sci USA 103: 3846-3851.
3. Canchaya, C., Proux, C., Fournous, G., Bruttin, A., and Brussow, H. (2003) Prophage genomics. Microbiol Mol Biol Rev 67: 238-276.
4. Chen, F., Wang, K., Stewart, J., and Belas, R. (2006) Induction of multiple prophages from a marine bacterium: a genomic approach. Appl Environ Microbiol 72: 4995-5001.
5. Chibani-Chennoufi, S., Bruttin, A., Dillmann, M.L., and Brüssow, H. (2004) Phage-host interaction: an ecological perspective. J Bacteriol 186: 3677-3686.
6. D'Hondt, S., Jørgensen, B.B., Miller, D.J., Batzke, A., Blake, R., Cragg, B.A., etal. (2004) Distributions of microbial activities in deep subseafloor sediments. Science 306: 2216-2221.
7. Danovaro, R., Dell'Anno, A., Corinaldesi, C., Magagnini, M., Noble, R., Tamburini, C., and Weinbauer, M. (2008) Major viral impact on the functioning of benthic deep-sea ecosystems. Nature 454: 1084-U1027.
8. Dowd, S.E., Pillai, S.D., Wang, S., and Corapcioglu, M.Y. (1998) Delineating the specific influence of virus isoelectric point and size on virus adsorption and transport through sandy soils. Appl Environ Microbiol 64: 405-410.
9. Gold, T. (1992) The deep, hot biosphere. Proc Natl Acad Sci USA 89: 6045-6049.
10. Inagaki, F., Nunoura, T., Nakagawa, S., Teske, A., Lever, M., Lauer, A., etal. (2006) Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments, on the Pacific Ocean Margin. Proc Natl Acad Sci USA 103: 2815-2820.
11. Jiang, S.C., and Paul, J.H. (1998) Significance of lysogeny in the marine environment: studies with isolates and a model of lysogenic phage production. Microb Ecol 35: 235-243.
12. Jørgensen, B.B., and D'Hondt, S. (2006) Ecology - A starving majority deep beneath the seafloor. Science 314: 932-934.
13. Kyle, J.E., Eydal, H.S.C., Ferris, F.G., and Pedersen, K. (2008) Viruses in granitic groundwater from 69 to 450 m depth of the Aspo hard rock laboratory, Sweden. ISME J 2: 571-574.
14. Lang, A.S., and Beatty, J.T. (2000) Genetic analysis of a bacterial genetic exchange element: the gene transfer agent of Rhodobacter capsulatus. Proc Natl Acad Sci USA 97: 859-864.
15. Lang, A.S., and Beatty, J.T. (2001) The gene transfer agent of Rhodobacter capsulatus and 'constitutive transduction' in prokaryotes. Arch Microbiol 175: 241-249.
16. Lipp, J.S., Morono, Y., Inagaki, F., and Hinrichs, K.U. (2008) Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature 454: 991-994.
17. Lunau, M., Lemke, A., Walther, K., Martens-Habbena, W., and Simon, M. (2005) An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy. Environ Microbiol 7: 961-968.
18. Parkes, R.J., Cragg, B.A., Bale, S.J., Getliff, J.M., Goodman, K., Rochelle, P.A., etal. (1994) Deep bacterial biosphere in Pacific Ocean sediments. Nature 371: 410-413.
19. Parkes, R.J., Cragg, B.A., and Wellsbury, P. (2000) Recent studies on bacterial populations and processes in subseafloor sediments: a review. Hydrogeol J 8: 11-28.
20. Rohwer, F., and Vega Thurber, R. (2009) Viruses manipulate the marine environment. Nature 459: 207-212.
21. Rohwer, F., Prangishvili, D., and Lindell, D. (2009) Roles of viruses in the environment. Environ Microbiol 11: 2771-2774.
22. Roussel, E.G., Cambon-Bonavita, M.A., Querellou, J., Cragg, B.A., Webster, G., Prieur, D., and Parkes, R.J. (2008) Extending the sub-sea-floor biosphere. Science 320: 1046-1046.
23. Schippers, A., and Neretin, L.N. (2006) Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR. Environ Microbiol 8: 1251-1260.
24. Schippers, A., Neretin, L.N., Kallmeyer, J., Ferdelman, T.G., Cragg, B.A., Parkes, R.J., and Jørgensen, B.B. (2005) Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria. Nature 433: 861-864.
25. Schrader, H.S., Schrader, J.O., Walker, J.J., Wolf, T.A., Nickerson, K.W., and Kokjohn, T.A. (1997) Bacteriophage infection and multiplication occur in Pseudomonas aeruginosa starved for 5 years. Can J Microbiol 43: 1157-1163.
26. Süß, J., Engelen, B., Cypionka, H., and Sass, H. (2004) Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods. FEMS Microbiol Ecol 51: 109-121.
27. Süß, J., Schubert, K., Sass, H., Cypionka, H., Overmann, J., and Engelen, B. (2006) Widespread distribution and high abundance of Rhizobium radiobacter within Mediterranean subsurface sediments. Environ Microbiol 8: 1753-1763.
28. Teske, A., and Sørensen, K.B. (2007) Uncultured archaea in deep marine subsurface sediments: have we caught them all? ISME J 2: 3-18.
29. Whitman, W.B., Coleman, D.C., and Wiebe, W.J. (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci USA 95: 6578-6583.