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Volumn 19, Issue 4, 2003, Pages 172-176

Potential genomic determinants of hyperthermophily

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CHAPERONE;

EID: 0037383069     PISSN: 01689525     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-9525(03)00047-7     Document Type: Review
Times cited : (70)

References (30)
  • 1
    • 0035098779 scopus 로고    scopus 로고
    • Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability
    • Vieille C., Zeikus G.J. Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol. Mol. Biol. Rev. 65:2001;1-43.
    • (2001) Microbiol. Mol. Biol. Rev. , vol.65 , pp. 1-43
    • Vieille, C.1    Zeikus, G.J.2
  • 3
    • 0035162592 scopus 로고    scopus 로고
    • The COG database: New developments in phylogenetic classification of proteins from complete genomes
    • Tatusov R.L., et al. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29:2001;22-28.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 22-28
    • Tatusov, R.L.1
  • 4
    • 0036574857 scopus 로고    scopus 로고
    • A hot story from comparative genomics: Reverse gyrase is the only hyperthermophile-specific protein
    • Forterre P. A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein. Trends Genet. 18:2002;236-237.
    • (2002) Trends Genet. , vol.18 , pp. 236-237
    • Forterre, P.1
  • 5
    • 0036470564 scopus 로고    scopus 로고
    • Crystal structure of reverse gyrase: Insights into the positive supercoiling of DNA
    • Rodriguez A.C., Stock D. Crystal structure of reverse gyrase: insights into the positive supercoiling of DNA. EMBO J. 21:2002;418-426.
    • (2002) EMBO J. , vol.21 , pp. 418-426
    • Rodriguez, A.C.1    Stock, D.2
  • 6
    • 0034780910 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes - quantification and classification
    • Koonin E.V., et al. Horizontal gene transfer in prokaryotes - quantification and classification. Annu. Rev. Microbiol. 55:2001;709-742.
    • (2001) Annu. Rev. Microbiol. , vol.55 , pp. 709-742
    • Koonin, E.V.1
  • 7
    • 0035546223 scopus 로고    scopus 로고
    • Detection of lateral gene transfer among microbial genomes
    • Ragan M.A. Detection of lateral gene transfer among microbial genomes. Curr. Opin. Genet. Dev. 11:2001;620-626.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 620-626
    • Ragan, M.A.1
  • 8
    • 0030249023 scopus 로고    scopus 로고
    • Non-orthologous gene displacement
    • Koonin E.V., et al. Non-orthologous gene displacement. Trends Genet. 12:1996;334-336.
    • (1996) Trends Genet. , vol.12 , pp. 334-336
    • Koonin, E.V.1
  • 9
    • 0036143446 scopus 로고    scopus 로고
    • Genomes in flux: The evolution of archaeal and proteobacterial gene content
    • Snel B., et al. Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Res. 12:2002;17-25.
    • (2002) Genome Res. , vol.12 , pp. 17-25
    • Snel, B.1
  • 10
    • 0037079680 scopus 로고    scopus 로고
    • A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
    • Makarova K.S., et al. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res. 30:2002;482-496.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 482-496
    • Makarova, K.S.1
  • 11
    • 0035085816 scopus 로고    scopus 로고
    • Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context
    • Wolf Y.I., et al. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. Genome Res. 11:2001;356-372.
    • (2001) Genome Res. , vol.11 , pp. 356-372
    • Wolf, Y.I.1
  • 12
    • 0033828623 scopus 로고    scopus 로고
    • Guilt by association: Contextual information in genome analysis
    • Aravind L. Guilt by association: contextual information in genome analysis. Genome Res. 10:2000;1074-1077.
    • (2000) Genome Res. , vol.10 , pp. 1074-1077
    • Aravind, L.1
  • 13
    • 0033574503 scopus 로고    scopus 로고
    • Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
    • Aravind L., Koonin E.V. Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. J. Mol. Biol. 287:1999;1023-1040.
    • (1999) J. Mol. Biol. , vol.287 , pp. 1023-1040
    • Aravind, L.1    Koonin, E.V.2
  • 14
    • 0037007150 scopus 로고    scopus 로고
    • The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens
    • Slesarev A.I., et al. The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens. Proc. Natl. Acad. Sci. U. S. A. 99:2002;4644-4649.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 4644-4649
    • Slesarev, A.I.1
  • 15
    • 0033793828 scopus 로고    scopus 로고
    • Biosynthesis of isoprenoids via mevalonate in Archaea: The lost pathway
    • Smit A., Mushegian A. Biosynthesis of isoprenoids via mevalonate in Archaea: the lost pathway. Genome Res. 10:2000;1468-1484.
    • (2000) Genome Res. , vol.10 , pp. 1468-1484
    • Smit, A.1    Mushegian, A.2
  • 16
    • 0343488601 scopus 로고    scopus 로고
    • A reconstruction of the metabolism of Methanococcus jannaschii from sequence data
    • Selkov E., et al. A reconstruction of the metabolism of Methanococcus jannaschii from sequence data. Gene. 197:1997;GC11-GC26.
    • (1997) Gene , vol.197
    • Selkov, E.1
  • 17
    • 0034841061 scopus 로고    scopus 로고
    • Adenosylmethionine-dependent iron-sulfur enzymes: Versatile clusters in a radical new role
    • Cheek J., Broderick J.B. Adenosylmethionine-dependent iron-sulfur enzymes: versatile clusters in a radical new role. J. Biol. Inorg. Chem. 6:2001;209-226.
    • (2001) J. Biol. Inorg. Chem. , vol.6 , pp. 209-226
    • Cheek, J.1    Broderick, J.B.2
  • 18
    • 0032483510 scopus 로고    scopus 로고
    • Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria
    • Ishiura M., et al. Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science. 281:1998;1519-1523.
    • (1998) Science , vol.281 , pp. 1519-1523
    • Ishiura, M.1
  • 19
    • 0037133331 scopus 로고    scopus 로고
    • Long-term microclimatic stress causes rapid adaptive radiation of kaiABC clock gene family in a cyanobacterium, Nostoc linckia, from 'Evolution Canyons' I and II, Israel
    • Dvornyk V., et al. Long-term microclimatic stress causes rapid adaptive radiation of kaiABC clock gene family in a cyanobacterium, Nostoc linckia, from 'Evolution Canyons' I and II, Israel. Proc. Natl. Acad. Sci. U. S. A. 99:2002;2082-2087.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 2082-2087
    • Dvornyk, V.1
  • 20
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 21
    • 0343384355 scopus 로고    scopus 로고
    • ARSACS, a spastic ataxia common in northeastern Quebec, is caused by mutations in a new gene encoding an 11.5-kb ORF
    • Engert J.C., et al. ARSACS, a spastic ataxia common in northeastern Quebec, is caused by mutations in a new gene encoding an 11.5-kb ORF. Nat. Genet. 24:2000;120-125.
    • (2000) Nat. Genet. , vol.24 , pp. 120-125
    • Engert, J.C.1
  • 22
    • 85031199865 scopus 로고    scopus 로고
    • Putative novel chaperone domains expanded in hyperthermophiles and associated with the prokaryotic minimal nucleotidyltransferase and human spastic ataxia protein
    • in press
    • Makarova, K.S. et al. Putative novel chaperone domains expanded in hyperthermophiles and associated with the prokaryotic minimal nucleotidyltransferase and human spastic ataxia protein. BMC Evolutionary Biol. (in press).
    • BMC Evolutionary Biol
    • Makarova, K.S.1
  • 23
    • 0033119535 scopus 로고    scopus 로고
    • DNA polymerase beta-like nucleotidyltransferase superfamily: Identification of three new families, classification and evolutionary history
    • Aravind L., Koonin E.V. DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history. Nucleic Acids Res. 27:1999;1609-1618.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1609-1618
    • Aravind, L.1    Koonin, E.V.2
  • 24
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov R.L., et al. A genomic perspective on protein families. Science. 278:1997;631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1
  • 25
    • 0032235371 scopus 로고    scopus 로고
    • Microbial genescapes: A prokaryotic view of the yeast genome
    • Ragan M.A., Gaasterland T. Microbial genescapes: a prokaryotic view of the yeast genome. Microb. Comp. Genomics. 3:1998;219-235.
    • (1998) Microb. Comp. Genomics , vol.3 , pp. 219-235
    • Ragan, M.A.1    Gaasterland, T.2
  • 26
    • 0033551248 scopus 로고    scopus 로고
    • Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
    • Pellegrini M., et al. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. Natl. Acad. Sci. U. S. A. 96:1999;4285-4288.
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 4285-4288
    • Pellegrini, M.1
  • 27
    • 0034084865 scopus 로고    scopus 로고
    • Who's your neighbor? New computational approaches for functional genomics
    • Galperin M.Y., Koonin E.V. Who's your neighbor? New computational approaches for functional genomics. Nat. Biotechnol. 18:2000;609-613.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 609-613
    • Galperin, M.Y.1    Koonin, E.V.2
  • 28
    • 0035046878 scopus 로고    scopus 로고
    • Lineage-specific gene expansions in bacterial and archaeal genomes
    • Jordan I.K., et al. Lineage-specific gene expansions in bacterial and archaeal genomes. Genome Res. 11:2001;555-565.
    • (2001) Genome Res. , vol.11 , pp. 555-565
    • Jordan, I.K.1
  • 29
    • 0033940941 scopus 로고    scopus 로고
    • Gene and context: Integrative approaches to genome analysis
    • Huynen M.A., Snel B. Gene and context: integrative approaches to genome analysis. Adv. Protein Chem. 54:2000;345-379.
    • (2000) Adv. Protein Chem. , vol.54 , pp. 345-379
    • Huynen, M.A.1    Snel, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.