Photosystem I gene cassettes are present in marine virus genomes

Nature

Volumn 461, Issue 7261, 2009, Pages 258-262

  Sharon, Itai ^a   Alperovitch, Ariella ^a   Rohwer, Forest ^b,c   Haynes, Matthew ^b   Glaser, Fabian ^a   Atamna Ismaeel, Nof ^a   Pinter, Ron Y ^a   Partensky, Frédéric ^d   Koonin, Eugene V ^e   Wolf, Yuri I ^e   Nelson, Nathan ^f   Béj, Oded ^a  

^a TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

^b SAN DIEGO STATE UNIVERSITY   (United States)

^c SAN DIEGO STATE UNIVERSITY   (United States)

^d STATION BIOLOGIQUE   (France)

^e NATIONAL INSTITUTES OF HEALTH   (United States)

^f TEL AVIV UNIVERSITY   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENE PRODUCT; MONOMER;

BACTERIOPHAGE; BIOME; CYANOBACTERIUM; DNA; GENE EXPRESSION; GENOME; LIFE CYCLE; MARINE ECOSYSTEM; OPEN OCEAN; PHOTOSYNTHESIS; PROTEIN; REACTION KINETICS;

ARTICLE; BACTERIAL GENE; BIOME; COMPLEX FORMATION; CRYSTAL STRUCTURE; CYANOBACTERIUM; ELECTRON TRANSPORT; GENE CASSETTE; GENE CLUSTER; GENE FUSION; GENE IDENTIFICATION; METAGENOMICS; NONHUMAN; PHOTOSYNTHESIS; PHOTOSYSTEM I; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROCHLOROCOCCUS; PSAA GENE; PSAB GENE; PSAC GENE; PSAD GENE; PSAE GENE; PSAF GENE; PSAJ GENE; PSAK GENE; SYNECHOCOCCUS; VIROGENESIS; VIRUS GENOME;

ADHESINS, BACTERIAL; AMINO ACID SEQUENCE; BACTERIOPHAGES; BIODIVERSITY; GENES, BACTERIAL; GENES, VIRAL; GENOME, BACTERIAL; GENOME, VIRAL; GEOGRAPHY; LIPOPROTEINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OCEANS AND SEAS; OPEN READING FRAMES; OXIDATION-REDUCTION; PHOTOSYNTHESIS; PHOTOSYSTEM I PROTEIN COMPLEX; PHYLOGENY; POLYMERASE CHAIN REACTION; PROCHLOROCOCCUS; PROTEIN CONFORMATION; SEAWATER; SYNECHOCOCCUS; VIRAL PROTEINS; WATER MICROBIOLOGY;

LINE ISLANDS; PACIFIC ISLANDS; PACIFIC OCEAN;

CYANOBACTERIA; PROCHLOROCOCCUS; SYNECHOCOCCUS;

EID: 70249108768     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature08284     Document Type: Article

References (30)

1. 1. Li, W. K. W., Zohary. T., Yacobi, Y. Z. & Wood. A. M. Ultraphytoplankton in the eastern Mediterranean Sea: towards deriving phytoplankton blomass from flow cytometric measurements of abundance, fluorescence and light scatter. Mar. Ecol. Prog. Ser. 102, 79-87 (1993). (Pubitemid 2006988)
2. 2. Liu, H., Nolla, H. A. & Campbell, L. Prochlorococeus growth rate and contribution to primary production in the equatorial and subtropical North Pacific Ocean. Aquat. Microb. Ecol. 12, 39-47 (1997). (Pubitemid 127703861)
3. 3. Partensky, F., Hess, W. R. & Vaulot, D. Prochlorococeus, a marine photosynthetic prokaryote of global significance. Microbiol. Mol. Biol. Rev. 63, 106-127 (1999). (Pubitemid 29116088)
4. Mann, N. H. Cook, A., Millard, A., Bailey. S. & Clokie, M. Bacterial photosynthesis genes in a virus. Nature 424, 741 (2003).
5. Millard, A., Clokie, M. R. J., Shub, D. A. & Mann, N. H. Genetic organization of the psbAD region In phages infecting marine Synechococcus strains, Proc. Natl Acad. Sci. USA 101, 11007-11012 (2004).
6. 6. Lindell, D. et al. Transfer of photosynthesis genes to and from Prochlorococeus viruses. Proc, Natl Acad. Sci. USA 101, 11013-11018 (2004). (Pubitemid 38989576)
7. Lindell, D., Jaffe, J. D., Johnson, Z. I., Church, G. M. & Chisholm, S. W. Photosynthesis genes in marine viruses yield proteins during host infection. Nature 438, 86-89 (2005).
8. Rusch, D. B. et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through the eastern tropical Pacific, PLoS Biol. 5, e77 (2007).
9. Dinsdale, E. A. et al. Functional metagenomic profiling of nine biomes. Nature 452, 629-632 (2008).
10. 10. Jordan, P. et al. Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution. Nature 411, 909-917 (2001). (Pubitemid 32601481)
11. Rohwer, F. & Thurber, R. V. Viruses manipulate the marine environment. Nature 459, 207-212 (2009).
12. Brown, N. F., Wickham, M. E., Coombes, B. K. & Finlay, B. B. Crossing the line: selection and evolution of virulence traits. PLoS Pathog. 2, e42 (2006).
13. Sullivan, M. B. et al. Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol. 4, e234 (2006).
14. Sharon, I. et al. Viral photosynthetic reaction center genes and transcripts in the marine environment. ISME J. 1, 492-501 (2007).
15. 15. Sullivan. M. B., Coleman. M. L., Weigele, P, Rohwer. F. & Chisholm, S. W. Three Prochlorococcus cyanophage genomes: &gnature features and ecological Interpretations. PLoS Biol. 3, e144 (2005). (Pubitemid 40958402)
16. Harlsmendy, O. et al. Evaluation of next generation sequencing platforms for population targeted sequencing studies. Genome Biol. 10, R32 (2009).
17. Dinsdale, E. A. et al. Microbial ecology of four coral atolls in the northern line islands. PLoS One 3, e1584 (2008).
18. Ben-Shem, A., Frolow, F. & Nelson, N. The crystal structure of plant photosystem I. Nature 426, 630-635 (2003).
19. Naithani, S., Hou, J. M. & Chitnis, P. R. Targeted inactivatlon of the psaK1, psaK2 and psaK3 genes encoding subunits of Photosystem I in the cyanobacterium Synechocysfis sp, PCC 6803. Phofosynth. Res. 63, 225-236 (2000).
20. Xu, Q. et al. Mutational analysis of photosystem I polypeptides In the cyanobacterium Synechocystls sp. PCC 6803. Targeted inactlvation of psal reveals the function of psal in the structural organization of psaL. J. Biol. Chem. 270, 16243-16250 (1995).
21. Kouřil, R., van Oosterwijk, N., Yakushevska, A. E., & Boekema, E. J. Photosystem I: a search for green plant trimers, Photochem. Photobiol. Sci. 4, 1091-1094 (2005).
22. Boekema, E. J. et al. Evidence for a trimeric organization of the photosystem I complex from the thermophilic cyanobacterium Synechocoecus sp. FEBS Lett. 217, 283-286 (1987).
23. Hippler, M., Drepper, F., Farah, J. & Rochaix, J. D. Fast electron transfer from cytochrome c6 and plastocyanin to photosystem I of Chlamydomonas reinhardtii requires PsaF, Biochemistry 36, 6343-6349 (1997).
24. Nelson, N. & Yocum, C. Structure and function of photosystems I and II. Annu. Rev. Plant Biol. 57, 521-565 (2006).
25. 25. Merchant. S. & Sawaya, M. R. The light reactions: a guide to recent acquisitions for the picture gallery, Plant Cell 17, 648-663 (2005). (Pubitemid 43138211)
26. Kerfeld, C. A. & Krogmann. D. W. Photosynthetic cytochromes c in cyanobacteria, algae and plants, Annu. Rev. Plant Physiol. Plant Mol. Biol. 49, 397-425 (1998).
27. 27. Rumeau, D., Peltier, G. & Cournac, L. Chlororespiration and cyclic electron flow around PSI during photosynthesis and plant stress response. Plant Cell Environ. 30, 1041-1051 (2007). (Pubitemid 47179809)
28. Bailey, S. et al. Alternative photosynthetic electron flow to oxygen In marine Synechocoecus. Biochim. Biophys. Acta 1777, 269-276 (2008).
29. 29. Partensky, F., La Roche, J., Wyman, K. & Falkowskl, P. G. The divlnyl-chlorophyll a/b-protein complexes of two strains of the oxyphototrophlc marine prokaryote Prochlorococeus-characterization and response to changes in growth irradiance. Phofosynth. Res. 51, 209-222 (1997), (Pubitemid 27275239)
30. Dammeyer, T., Bagby, S. C., Sullivan, M. B., Chisholm, S. W. & Frankenberg-Dinkel, N. Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria. Curr. Biol. 18, 442-448 (2008).