Salmonella importance and current status of detectionand surveillance methods

Quality Assurance and Safety of Crops and Foods

Volumn 1, Issue 3, 2009, Pages 142-152

  Alakomi, Hanna Leena ^a   Saarela, Maria ^a  

^a VTT TECHNICAL RESEARCH CENTRE OF FINLAND   (Finland)

Author keywords

Contaminants; Food safety; Microbiology; Pathogens; Rapid methods

Indexed keywords

BACTERIA (MICROORGANISMS); ENTEROBACTERIACEAE; SALMONELLA;

EID: 84864083206     PISSN: 17578361     EISSN: 1757837X     Source Type: Journal    
DOI: 10.1111/j.1757-837X.2009.00032.x     Document Type: Review

References (95)

1. Alexander C., Rietschel E.T. (2001) Bacterial lipopolysaccharides and innate immunity. Journal of Endotoxin Research, 7, 167-202.
2. Al-Saigh H., Zweifel C., Blanco J., Blanco J.E., Blanco M., Usera M.A., Stephan R. (2004) Fecal shedding of Escherichia coli O157, Salmonella, and Campylobacter in Swiss cattle at slaughter. Journal of Food Protection, 4, 679-684.
3. Anriany Y.A., Sahu S.N., Wessels K.R., McCann L.M., Joseph S.W. (2006) Alteration of the rugose phenotype in waaG and ddhC mutants of Salmonella enterica serovar Typhimurium DT205 is associated with inverse production of curli and cellulose. Applied and Environmental Microbiology, 7, 2002-2012.
4. Baker S., Dougan G. (2007) The genome of Salmonella enterica serovar Typhi. Clinical Infectious Diseases, 56, S29-S33.
5. Berk P.A., Maas H.M.E., de Pinna E., Mooijman K.A. (2007) Twelfth CRLSalmonella interlaboratory comparison study (2007) on typing of Salmonella spp. National institute for Public Health and Environment, Bilthoven, the Netherlands. Report no.: 330604005/2007.
6. Chen S., Zhao S., McDermott P.F., Schoeder C.M., White D.G., Meng J. (2005) A DNA microarray for identification of virulence and antimicrobial resistance genes in Salmonella serovars and Escherichia coli. Molecular and Cellular Probes, 19, 195-201.
7. Cheung P.Y., Kwok K.K., Kam K.M. (2007) Application of BAX system, Tecra UniqueTM Salmonella test, and a conventional culture method for the detection of Salmonella in ready to eat and raw foods. Journal of Applied Microbiology, 103, 219-227.
8. Chiu C.H., Su L.H., Chu C. (2004) Salmonella enterica serotype Chloraesuis: epidemiology, pathogenesis, clinical disease and treatment. Clinical Microbiology Reviews, 2, 311-322.
9. Croci L., Delibato E., Volpe G., De Medicini D., Palleschi G. (2004) Comparison of PCR, electrochemical enzyme-linked immunosorbent assays, and the standard culture method for detecting Salmonella in meat products. Applied and Environmental Microbiology, 70, 1393-1396.
10. Crump J.A., Luby S.P., Mintz E.D. (2004) The global burden of typhoid fever. Bulletin of World Health Organisation, 82, 346-353.
11. D'Aoust J.Y., Fagotto F., Akhtar M., Bussey J., Cooper C., McDonald C., Meymandy M., Tyler K. (2007) Evaluation of the BAC gel and fluorometric systems for the detection of food-borne Salmonella. Journal of Food Protection, 70, 835-840.
12. Das E., Gürakan C., Bayindirh A. (2006) Effect of controlled atmosphere storage, modified atmosphere packaking and gaseous ozone treatment on the survival of Salmonella Enteritidis on cherry tomatoes. Food Microbiology, 23, 430-438.
13. Datta Mazumdar S., Hartmann M., Kämpfer P., Keusgen M. (2007) Rapid method for detection of Salmonella in milk by surface plasmon resonance (SPR). Biosensors and Bioelectronics, 22, 2040-2046.
14. Duffy E.A., Lucia L.M., Kells J.M., Castillo A., Pillai S.D., Acuff G.R. (2005) Concentrations of Escherichia coli and genetic diversity and antibiotic resistance profiling of Salmonella isolated from irrigation water, packing shed equipment, and fresh produce in Texas. Journal of Food Protection, 68, 70-79.
15. Dunbar S.A., Jakobson J.W. (2007) Quantitative, multiplexed detection of Salmonella and other pathogens by Luminex xMAP suspension array. Methods in Molecular Biology, 394, 119.
16. EFSA (2007) Report on evaluation of the community reporting system for food-borne outbreaks under Directive 2003/99/EC. The EFSA Journal, 131, 140.
17. EFSA (2008) Report of the Task Force on Zoonoses Data Collection on the analysis of the baseline survey on the prevalence of Salmonella in slaughter pigs, in the EU, 20062007. Part A: Salmonella prevalence estimates. The EFSA Journal, 135, 1-111.
18. Ellermeier G.D., Slauch J.M. (2006) The Genus Salmonella. Chapter 3.3.7. In: Prokaryotes, 3rd edition. Vol. 6 pp. 123-158, Springer, New York.
19. Fang Q., Brockmann S., Botzenhart K., Wiedenmann A. (2003) Improved detection of Salmonella spp. in foods by fluorescent in situ hybridization with 23S rRNA probes: a comparison with conventional cultural methods. Journal of Food Protection, 66, 723-731.
20. Fravalo P., Hascoet Y., Le Fellic M., Quenguiner S., Petton J., Salvat G. (2003) Convenient method for rapid and quantitative assessment of Salmonella enterica contamination: the mini-MSRV MPN technique. Journal of Rapid Methods Automation in Microbiology, 11, 81-88.
21. Gibson D.L., White A.P., Snyder S.D., Martin S., Heiss C., Azadi P., Surette M., Kay W.W. (2006) Salmonella produces an Oantigen capsule regulated by AgfD and important for environmental persistence. Journal of Bacteriology, 188, 7722-7730.
22. Graham S.M. (2002) Salmonellosis in children in developing and developed countries and populations. Current Opinion in Infectious Diseases, 15, 507-512.
23. Groisman E.A., Ochman H. (1997) How Salmonella became a pathogen. Trends in Microbiology, 5, 343-349.
24. Guard-Bouldin J., Gast R.K., Humprey T.J., Henzler D.J., Morales C., Coles K. (2004) Subpopulation characteristics of eggcontaminating Salmonella enterica serovar Enteritidis as defined by the lipopolysaccharide O chain. Applied and Environmental Microbiology, 70, 2756-2763.
25. Guard-Petter J. (2001) The chicken, the egg and Salmonella enteritidis. Environmental Microbiology, 3, 421-430.
26. Guntupalli R., Lakshmanan R.S., Hu J., Huang T.S., Barbaree J.M., Vodyanoy V., Chin B.A. (2007) Rapid and sensitive magnetoelastic biosensors for the detection of Salmonella Typhimurium in a mixed microbial population. Journal of Microbiological Methods, 70, 112-118.
27. Hagens S., Loessner M.J. (2007) Application of bacteriophages for detection and control of food-borne pathogens. Applied Microbiology and Biotechnology, 76, 513-519.
28. Hagren V., von Lode P., Syrjälä A., Korpimäki T., Tuomola M., Kauko O., Nurmi J. (2008) An 8-hour system for Salmonella detection with immunomagnetic separation and homogenous time-resolved fluorescence PCR. International Journal of Food Microbiology, 125, 158-161.
29. Health Protection Agency (2007) Detection of Salmonella species. National Standard Method F13 Issue 3. http://www.hpastandardmethods. org.uk/pdf_sops.asp
30. Hein I., Flekna G., Krassnig M., Wagner M. (2006) Real-time PCR for the detection of Salmonella spp. in food: an alternative approach to a conventional PCR system: suggested by the FOODPCR project. Journal of Microbiological Methods, 66, 538-547.
31. Hein I., Schneeweiss W., Stanek C., Wagner M. (2007) Ethdium monoazide and propidium monoazide for elimination of unspecific DNA background in quantitative universal real-time PCR. Journal of Microbiological Methods, 71, 336-339.
32. Herikstad H., Motorjemin Y., Tauxe R.V. (2002) Salmonella surveillance: a global survey of public health serotyping. Epidemiology and Infection, 129, 1-8.
33. Hoorfar J., Baggesen D.L., Porting P.H. (1999) A PCR-based strategy for simple and rapid identification of rough presumptive Salmonella isolates. Journal of Microbiological Methods, 35, 77-84.
34. Hopkins K.L., Arnold C., Threlfall E.J. (2007) Rapid detection of gyrA and parC mutations in quinolone-resistant Salmonella enterica using Pyrosequencings technology. Journal of Microbiological Methods, 68, 163-171.
35. Humphrey T. (2001) Salmonella Typhimurium definitive type 104 A multi-resistant Salmonella. International Journal of Food Microbiology, 67, 173-186.
36. Humphrey T. (2004) Salmonella, stress responses and food safety. Nature Reviews: Microbiology, 2, 504-509.
37. ISO 16140: 2003 Microbiology of food and animal feeding stuffs-Protocol for the validation of alternative methods.
38. ISO 6579: 2002 Microbiology of food and animal feeding stuffs-Horizontal method for the detection of Salmonella spp.
39. ISO 6579: 2002/Amd. 1:2007 Amendment 1, Annex D: Detection of Salmonella spp. in animal feaces and in environmental samples from the primary production stage.
40. ISO 20838: 2006 Microbiology of food and animal feeding stuffs-Polymerase chain reaction (PCR) for the detection of foodborne pathogens-Requirements for amplification and detection for qualitative methods.
41. ISO/DIS 22119 Microbiology of food and animal feeding stuffs-Real-time polymerase chain reaction (PCR) for the detection of food-borne pathogens General requirements and definitions
42. ISO 7218: 2007 Microbiology of food and animal feeding stuffs-General requirements and guidance for microbiological examinations.
43. Joosten H., Bidlas E., Garofalo N. (2006) Salmonella detection in probiotic products. International Journal of Food Microbiology, 110, 104-107.
44. Juste A., Thomma B.P.H.J., Lievens B. (2008) Recent advances in molecular techniques to study microbial communitites in food-associated matrices and processes. Food Microbiology, 25, 745-761.
45. Kangas S., Lyytikäinen T., Peltola J., Ranta J., Maijala R. (2007) Costs of two alternative Salmonella control policies in Finnish broiler production. Acta Veterinaria Scandinavica, 49, 35.
46. Kaufmann S.H., Raupach B., Finlay B.B. (2001) Introduction: microbiology and immunology: lessons learned from Salmonella. Microbes and Infection, 3, 1177-1181.
47. Korver H., Mooijman K.A., Nagelkerke N.J.D., van de Giessen A.W., Henken A.M. (2003) EU Collaborative study VI (2002) on bacteriological detection of Salmonella spp. RIVM report 330300001/2003. Bilthoven, the Netherlands.
48. Kuhn J., Suissa M., Wyse J., Cohen I., Weiser I., Reznick S., Lubinsky-Mink S., Stewart G., Ulitzur S. (2002) Detection of bacteria using foreing DNA: the development of a bacteriophage reagent for Salmonella. International Journal of Food Microbiology, 74, 229-238.
49. Kutter S., Hartmann A., Schmid M. (2006) Colonization of barley (Hordeum vulgare) with Salmonella enterica and Listeria spp. FEMS Microbial Ecology, 56, 262-271.
50. Lantz A.W., Brehm-Stecher B.F., Armstrong D.W. (2008) Combined capillary electrophoresis and DANN-fluorescence in situ hybridization for rapid molecular identification of Salmonella Typhimurium in mixed cultures. Electrophoresis, 29, 2477-2484.
51. Lazcka O., Del Campo F.J., Xavier Muñoz F.X. (2007) Pathogen detection: a perspective of traditional methods and biosensors. Biosensors and Bioelectronics, 22, 1205-1217.
52. Liebana E., Garcia-Migura L., Clouting C., Clifton-Hadley F.A., Breslin M., Davies R.H. (2003) Molecular fingerprinting evidence of the contribution of wildlife vectors in the maintenance of Salmonella Enteritidis infection in layer farms. Journal of Applied Microbiology, 94, 1024-1029.
53. Löfström C., Knutsson R., Engdahl Axelsson C., Rådström P. (2004) Rapid and sensitive detection of Salmonella spp. in animal feed samples by PCR after culture enrichment. Applied and Environmental Microbiology, 70, 69-75.
54. Lombard B. (2006) Microbiological analysis of foods: standards applicable to meat and dairy products. ISO Focus, April, 23-25.
55. Lukinmaa S., Nakari U.M., Eklund M., Siitonen A. (2004) Application of molecular genetic methods in diagnostics and epidemiology of food-borne bacterial pathogens. 112, 908-929.
56. Maciorowski K.G., Herrera P., Jones F.T., Pillai S.D., Ricke S.C. (2006) Cultural and immunological detection for Salmonella spp. in animal feeds-A review. Veterinary Research Communications, 30, 127-137.
57. Malorny B., Bunge C., Helmuth R. (2007) A real-time PCR for the detection of Salmonella Enteritidis in poultry meat and consumption eggs. Journal of Microbiological Methods, 70, 245-251.
58. Malorny B., Löfström C., Wagner M., Krämer N., Hoorfar J. (2008) Enumeration of Salmonella bacteria in food and feed samples by Real-Time PCR for quantative risk assessment. Applied and Environmental Microbiology, 74, 1299-1304.
59. Manafi M. (2000) New developments in chromogenic and fluorogenic culture media. International Journal of Food Microbiology, 60, 205-218.
60. Marcus S.L., Brumell J.H., Pfeifer C.G., Finlay B.B. (2000) Salmonella pathogenicity islands: big virulence in small packages. Microbes and Infection, 2, 145-156.
61. Martinez-Urtaza J., Saco M., de Novoa J., Perez-Pineiro P., Peiteado J., Lozano-Leon A., Garcia-Martin O. (2004) Influence of environmental factors and human activity on the presence of Salmonella serovars in a marine environment. Applied and Environmental Microbiology, 70, 2089-2097.
62. McClelland M., Sanderson K.E., Spieth J., Clifton S.W., Latreille P., Courtney L., Porwollik S., Ali J., Dante M., Du F., Hou S., Layman D., Leonard S., Nguyen C., Scott K., Holmes A., Grewal N., Mulvaney E., Ryan E., Sun H., Florea L., Miller W., Stoneking T., Nhan M., Waterston R., Wilson R.K. (2001) Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature, 413, 852-856.
63. McMahon W.A., Schultz A.M., Johnson R.L. (2004) Evaluation of VIDAS Salmonella (SLM) immunoassay method with RappaportVassiliadis (RV) medium for detection of Salmonella in foods: collaborative study. Journal of AOAC International, 87, 867-883.
64. Merrell D.S., Falkow S. (2004) Frontal and stealth attack strategies in microbial pathogenesis. Nature, 430, 250-256.
65. Mozola M.A. (2006) Genetics-based methods for detection of Salmonella spp. in foods. Journal of AOAC International, 89, 517-529.
66. Noble R.T., Weisberg S.B. (2005) A review of technologies for rapid detection of bacteria in recreational waters. Journal of Water and Health, 03 4, 381-392.
67. Nocker A., Camper A.K. (2006) Selective removal of DNA from dead cells of mixed bacterial communities by use of ethidium monoazide. Applied and Environmental Microbiology, 3, 1997-2004.
68. Nocker A., Cheung C.Y., Camper A.K. (2006) Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells. Journal of Microbiological Methods, 67, 310-320.
69. Plym-Forshell L., Wierup M. (2006) Salmonella contamination: a significant challenge to the global marketing of animal food products. OIE Scientific and Technical Review, 25, 541-554.
70. Polaczyk A.L., Naryanan J., Cromeans T.L., Hahn D., Roberts J.M., Amburgey JE., Hill V.R. (2008) Ultrafiltration-based techniques for rapid and simultaneous concentration of multiple microbe classes from 100L tap water samples. Journal of Microbiological Methods, 73, 92-99.
71. th ed. World Health Organization Collaborating Centre for Reference and Research on Salmonella. Institut Pasteur, Paris, France.
72. Popoff M.Y., Bockemühl J., Gheesling L.L. (2004) Supplement 2002 (no. 46) to the Kauffman-White scheme. Research in Microbiology, 155, 568-570.
73. Raetz C.R., Whitfield C. (2002) Lipopolysaccharide endotoxins. Annual Reviews Biochemistry, 71, 635-700.
74. Rapid Alert System for Food and Feed (RASFF) (2006) RASFF Annual Report. Office for Official Publications of the European Communities, Luxembourg. 2007. 70 pp.
75. Raupach B., Kauffman S.H.E. (2001) Immune responses to intracellular bacteria. Current Opinion in Immunology, 1, 417-428.
76. Regulation (EC) No 2160/2003 of the European parliament and of the council of 17 November 2003 on the control of salmonella and other specific food-borne zoonotic agents. Official Journal of European Union, L325, 1-15.
77. Reij M.W., Den Aantrekker E.D. (2004) ILSI Europe Risk Analysis in Microbiology Task Force. Recontamination as a source of pathogens in processed foods. International Journal of Food Microbiology, 91, 1-11.
78. Reissbrodt R., Rienaecker I., Romanova J.M., Freestone P.P., Heigh R.D., Lyte M., Tschape H., Williams P.H. (2002) Resuscitation of Salmonella enterica serovar Typhimurium and enterohemorrhagic Esherichia coli from the viable but nonculturable state by heatstable enterobacterial autoinducer. Applied and Environmental Microbiology, 68, 4788-4794.
79. Rodríguez-Lázaro D., Hernández M., Esteve T., Hoorfar J., Pla M. (2003) A rapid and direct real time PCRbased method for identification of Salmonella spp. Journal of Microbiological Methods, 54, 381-390.
80. Scaria J., Palaniappan U.M., Ckiu D., Phan J.A., Ponnala L., McDonough P., Grohn Y.T., Porwollik S., McCelland M., Chiou C.S., Chu C., Chang Y.F. (2008) Microarray for molecular typing of Salmonella enterica serovars. Molecular and Cellular Probes, 22, 238-243.
81. Schneitz C., Nuotio L., Mead G., Nurmi E. (1992) Competitive exclusion in the young bird: challenge models, administration and reciprocal protection. International Journal of Food Microbiology, 15, 241-244.
82. Schneitz C., Renney D.J. (2003) Effect of a commerical competitive exclusion product on the colonization of Salmonella Infantis in day-old pheasant chicks. Avian Diseases, 47, 1448-1451.
83. Schönenbrücher V., Mallinson E.T., Bülte M. (2008) A comparison of standard cultural methods for the detection of food-borne Salmonella species including three new chromogenic plating media. International Journal of Food Microbiology, 123, 61-66.
84. Sørum H., L'Abée-Lund T.M. (2002) Antibiotic resistance in food-related bacteria-a result of interfering with the global web of bacterial genetics. International Journal of Food Microbiology, 78, 43-56.
85. Su L.H., Chiu C.H., Chu C., Ou J.T. (2004) Antimicrobial resistance in nontyphoid Salmonella serotypes: a global challenge. Clinical Infectious Diseases, 39, 546-551.
86. Tauxe R.V. (2002) Emerging food-borne pathogens. International Journal of Food Microbiology, 78, 31-41.
87. Tindall B.J., Grimont PA.D., Garrity G.M., Euzéby J.P. (2005) Nomenclature and taxonomy of the genus Salmonella. International Journal of Systematic and Evolutionary Microbiology, 55, 521-524.
88. Trent M.S., Stead C.M., Tran A.X., Hankins J.V. (2006) Diversity of endotoxin and its impact on pathogenesis. Journal of Endotoxin Research, 12, 205-223.
89. van Asselt E.D., Zwietering M.H. (2006) A systematic approach to determine global thermal inactivation parameters for various food pathogens. International Journal of Food Microbiology, 107, 73-82.
90. van Immerseel F., Methner U., Rychlik I., Nagy B., Velge P., Martin G., Foster N., Ducatelle R., Barrow P.A. (2005) Vaccination and early protection against non-host-spesific Salmonella serotypes in poultry: exploitation of innate immunity and microbial activity. Epidemiology and Infection, 133, 959-978.
91. Voetsch A.C., van Gilder T.J., Angulo F.J., Farley M.M., Shallow S., Marcus R., Cieslak P.R., Deneen V.C., Tauxe R.V. (2004) FoodNet estimate of the burden of illness caused by nontyphoidal Salmonella infections in the United States. Clinical Infectious Diseases, 38 Suppl 3, S127-S134.
92. Vollaard A.M., Ali S., van Asten H.A., Widjaja S., Visser L.G., Surjadi C., van Dissel J.T. (2004) Risk factors for typhoid and paratyphoid fever in Jakarta, Indonesia. JAMA, 291, 2607-2615.
93. Warren B.R., Yuk H.G., Schneider K.R. (2006) Detection of Salmonella by flow-through immunocapture real-time PCR in selected foods within 8 hours. Journal of Food Protection, 70, 1002-1006.
94. Wolffs P.F.G., Glencross K., Thibaudeau R., Griffiths M.W. (2006) Direct quantitation and detection of Salmonellae in biological samples without enrichment, using two-step filtration and real-time PCR. Applied and Environmental Microbiology, 72, 3896-3900.
95. Zhang X.L., Tunje Jeza V., Pan Q. (2008) Salmonella Typhi. from a human pathogen to vaccine vector. Cellular and Molecular Immunology, 2, 91-97.