A DNA microarray for identification of virulence and antimicrobial resistance genes in Salmonella serovars and Escherichia coli

Molecular and Cellular Probes

Volumn 19, Issue 3, 2005, Pages 195-201

  Chen, Sheng ^a,c   Zhao, Shaohua ^b   McDermott, Patrick F ^b   Schroeder, Carl M ^a,d   White, David G ^b   Meng, Jianghong ^a  

^a UNIVERSITY OF MARYLAND   (United States)

^b CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^c MEDICAL COLLEGE OF WISCONSIN   (United States)

^d U S DEPARTMENT OF AGRICULTURE   (United States)

Author keywords

Antimicrobial resistance; DNA microarray; E. coli; Salmonella; Virulence

Indexed keywords

AMOXICILLIN; AMPICILLIN; BETA LACTAM; CEFALOTIN; CEFOXITIN; CEFTIOFUR; CEFTRIAXONE; CEPHALOSPORIN; CHLORAMPHENICOL; CIPROFLOXACIN; CLAVULANIC ACID; COTRIMOXAZOLE; DNA; GENTAMICIN; HEMOLYSIN; INTEGRASE; KANAMYCIN; QUATERNARY AMMONIUM DERIVATIVE; STREPTOMYCIN; SULFAMETHOXAZOLE; SULFONAMIDE; TETRACYCLINE; VEROTOXIN 1; VEROTOXIN 2;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA MICROARRAY; GENETIC RESISTANCE; GENETIC TRAIT; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SALMONELLA; SEROTYPE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; SALMONELLA; SALMONELLA TYPHIMURIUM; TYPHIMURIUM;

EID: 15944394780     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mcp.2004.11.008     Document Type: Article

References (42)

1. P.S. Mead, L. Slutsker, V. Dietz, L.F. McCaig, J.S. Bresee, and C. Shapiro Food-related illness and death in the United States Emerg Infect Dis 5 1999 607 625
2. P.A. Gulig, H. Danbara, D.G. Guiney, A.J. Lax, F. Norel, and M. Rhen Molecular analysis of spv virulence genes of the Salmonella virulence plasmids Mol Microbiol 7 1993 825 830
3. P.A. Gulig, and T.J. Doyle The Salmonella typhimurium virulence plasmid increases the growth rate of salmonellae in mice Infect Immun 61 1993 504 511
4. J.P. Nataro, T. Steiner, and R.L. Guerrant Enteroaggregative Escherichia coli Emerg Infect Dis 4 1998 251 261
5. S.C. Clarke Diarrhoeagenic Escherichia coli - an emerging problem? Diagn Microbiol Infect Dis 41 2001 93 98
6. S. Bekal, R. Brousseau, L. Masson, G. Prefontaine, J. Fairbrother, and J. Harel Rapid identification of Escherichia coli pathotypes by virulence gene detection with DNA microarrays J Clin Microbiol 41 2003 2113 2125
7. V.K. Sharma Detection and quantitation of enterohemorrhagic Escherichia coli O157, O111, and O26 in beef and bovine feces by real-time polymerase chain reaction J Food Prot 65 2002 1371 1380
8. C.G. Clark, S.T. Johnson, R.H. Easy, J.L. Campbell, and F.G. Rodgers PCR for detection of cdt-III and the relative frequencies of cytolethal distending toxin variant-producing Escherichia coli isolates from humans and cattle J Clin Microbiol 40 2002 2671 2674
9. J. Osek Detection of the enteroaggregative Escherichia coli heat-stable enterotoxin 1 (EAST1) gene and its relationship with fimbrial and enterotoxin markers in E. coli isolates from pigs with diarrhoea Vet Microbiol 91 2003 65 72
10. P. Feng, and S.R. Monday Multiplex PCR for detection of trait and virulence factors in enterohemorrhagic Escherichia coli serotypes Mol Cell Probes 14 2000 333 337
11. G. Wang, C.G. Clark, and F.G. Rodgers Detection in Escherichia coli of the genes encoding the major virulence factors, the genes defining the O157:H7 serotype, and components of the type 2 Shiga toxin family by multiplex PCR J Clin Microbiol 40 2002 3613 3619
12. S. Chen, S. Zhao, D.G. White, C.M. Schroeder, R. Lu, and H. Yang Characterization of multiple-antimicrobial-resistant Salmonella serovars isolated from retail meats Appl Environ Microbiol 70 2004 1 7
13. C.D. Miranda, C. Kehrenberg, C. Ulep, S. Schwarz, and M.C. Roberts Diversity of tetracycline resistance genes in bacteria from Chilean salmon farms Antimicrob Agents Chemother 47 2003 883 888
14. D. Boyd, A. Cloeckaert, E. Chaslus-Dancla, and M.R. Mulvey Characterization of variant Salmonella genomic island 1 multidrug resistance regions from serovars Typhimurium DT104 and Agona Antimicrob Agents Chemother 46 2002 1714 1722
15. B. Doublet, R. Lailler, D. Meunier, A. Brisabois, D. Boyd, and M.R. Mulvey Variant Salmonella genomic island 1 antibiotic resistance gene cluster in Salmonella enterica serovar Albany Emerg Infect Dis 9 2003 585 591
16. D.R. Call, M.K. Bakko, M.J. Krug, and M.C. Roberts Identifying antimicrobial resistance genes with DNA microarrays Antimicrob Agents Chemother 47 2003 3290 3295
17. L. Westin, C. Miller, D. Vollmer, D. Canter, R. Radtkey, and M. Nerenberg Antimicrobial resistance and bacterial identification utilizing a microelectronic chip array J Clin Microbiol 39 2001 1097 1104
18. M. Kato-Maeda, Q. Gao, and P.M. Small Microarray analysis of pathogens and their interaction with hosts Cell Microbiol 3 2001 713 719
19. V. Chizhikov, A. Rasooly, K. Chumakov, and D.D. Levy Microarray analysis of microbial virulence factors Appl Environ Microbiol 67 2001 3258 3263
20. Y. Dong, J.D. Glasner, F.R. Blattner, and E.W. Triplett Genomic interspecies microarray hybridization: rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames Appl Environ Microbiol 67 2001 1911 1921
21. H. Hu, R. Lan, and P.R. Reeves Fluorescent amplified fragment length polymorphism analysis of Salmonella enterica serovar typhimurium reveals phage-type- specific markers and potential for microarray typing J Clin Microbiol 40 2002 3406 3415
22. M. McClelland, K.E. Sanderson, J. Spieth, S.W. Clifton, P. Latreille, and L. Courtney Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 Nature 413 2001 852 856
23. National committee for clinical laboratory standards performance standards for antimicrobial disk and dilution susceptibility tests for bacteria isolated from animals - approved standards M31-A2, NCCLS, Wayne, PA, 2003.
24. National committee for clinical laboratory standards methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically; approved standard. NCCLS Document M7-A6), National committee for clinical laboratory standards, Wayne, PA, 2003.
25. S. Zhao, D.G. White, B. Ge, S. Ayers, S. Friedman, and L. English Identification and characterization of integron-mediated antibiotic resistance among Shiga toxin-producing Escherichia coli isolates Appl Environ Microbiol 67 2001 1558 1564
26. S.F. Altschul, and E.V. Koonin Iterated profile searches with PSI-BLAST - a tool for discovery in protein databases Trends Biochem Sci 23 1998 444 447
27. Y.M. Abouzeed, H. Hariharan, C. Poppe, and F.S. Kibenge Characterization of Salmonella isolates from beef cattle, broiler chickens and human sources on Prince Edward Island Comp Immunol Microbiol Infect Dis 23 2000 253 266
28. G. Szmolleny, A. Kostyak, S. Kovacs, K. Speed, Y. Jones, and V.G. Laszlo Epidemiology and characterization of animal Salmonella enterica subspecies Enterica serotype typhimurium DT104 in Hungary Acta Vet Hung 48 2000 407 420
29. T. Sameshima, M. Akiba, H. Izumiya, J. Terajima, K. Tamura, and H. Watanabe Salmonella typhimurium DT104 from livestock in Japan Jpn J Infect Dis 53 2000 15 16
30. A. Ridley, and E.J. Threlfall Molecular epidemiology of antibiotic resistance genes in multiresistant epidemic Salmonella typhimurium DT 104 Microb Drug Resist 4 1998 113 118
31. A. Markogiannakis, P.T. Tassios, M. Lambiri, L.R. Ward, J. Kourea-Kremastinou, and N.J. Legakis Multiple clones within multidrug-resistant Salmonella enterica serotype Typhimurium phage type DT104. The Greek nontyphoidal salmonella study group J Clin Microbiol 38 2000 1269 1271
32. H. Izumiya, K. Tamura, J. Terajima, and H. Watanabe Salmonella enterica serovar. Typhimurium phage type DT104 and other multi-drug resistant strains in Japan Jpn J Infect Dis 52 1999 133
33. N. Calvert, W.C. Stewart, and W.J. Reilly Salmonella typhimurium DT104 infection in people and animals in Scotland: a collaborative epidemiological study 1993-96 Vet Rec 143 1998 351 354
34. C. Ewers, T. Janssen, and L.H. Wieler Avian pathogenic Escherichia coli (APEC) Berl Munch Tierarztl Wochenschr 116 2003 381 395
35. M. Mellata, M. Dho-Moulin, C.M. Dozois, R. Curtiss 3rd, B. Lehoux, and J.M. Fairbrother Role of avian pathogenic Escherichia coli virulence factors in bacterial interaction with chicken heterophils and macrophages Infect Immun 71 2003 494 503
36. E.F. Dunne, P.D. Fey, P. Kludt, R. Reporter, F. Mostashari, and P. Shillam Emergence of domestically acquired ceftriaxone-resistant Salmonella infections associated with AmpC beta-lactamase JAMA 284 2000 3151 3156
37. F. Navarro, E. Perez-Trallero, J.M. Marimon, R. Aliaga, M. Gomariz, and B. Mirelis CMY-2-producing Salmonella enterica Klebsiella pneumoniae, Klebsiella oxytoca, Proteus mirabilis and Escherichia coli strains isolated in Spain (October 1999-December 2000) J Antimicrob Chemother 48 2001 383 389
38. D.G. White, S. Zhao, R. Sudler, S. Ayers, S. Friedman, and S. Chen The isolation of antibiotic-resistant salmonella from retail ground meats N Engl J Med 345 2001 1147 1154
39. S.C. Rankin, H. Aceto, J. Cassidy, J. Holt, S. Young, and B. Love Molecular characterization of cephalosporin-resistant Salmonella enterica serotype Newport isolates from animals in Pennsylvania J Clin Microbiol 40 2002 4679 4684
40. M. Sabate, and G. Prats Structure and function of integrons Enferm Infecc Microbiol Clin 20 2002 341 345
41. A.J. Maguire, D.F. Brown, J.J. Gray, and U. Desselberger Rapid screening technique for class 1 integrons in Enterobacteriaceae and nonfermenting gram-negative bacteria and its use in molecular epidemiology Antimicrob Agents Chemother 45 2001 1022 1029
42. D. Sandvang, and F.M. Aarestrup Characterization of aminoglycoside resistance genes and class 1 integrons in porcine and bovine gentamicin-resistant Escherichia coli Microb Drug Resist 6 2000 19 27