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Volumn 25, Issue 6, 2008, Pages 745-761

Recent advances in molecular techniques to study microbial communities in food-associated matrices and processes

Author keywords

Food microbiology; Identification; Microbial diversity; Molecular methods; Quantification

Indexed keywords

BACTERIAL DNA;

EID: 46949095048     PISSN: 07400020     EISSN: 10959998     Source Type: Journal    
DOI: 10.1016/j.fm.2008.04.009     Document Type: Review
Times cited : (175)

References (231)
  • 1
    • 0035511960 scopus 로고    scopus 로고
    • An altered Pseudomonas diversity is recovered from soil by using nutrient-poor Pseudomonas-selective soil extract media
    • Aagot N., Nybroe O., Nielsen P., and Johnsen K. An altered Pseudomonas diversity is recovered from soil by using nutrient-poor Pseudomonas-selective soil extract media. Appl. Environ. Microbiol. 67 (2001) 5233-5239
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5233-5239
    • Aagot, N.1    Nybroe, O.2    Nielsen, P.3    Johnsen, K.4
  • 2
    • 0342506808 scopus 로고    scopus 로고
    • Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA
    • Acinas S.G., Rodri{dotless}iguez-Valera F., and Pedrós-Alió C. Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA. FEMS Microb. Ecol. 24 (1997) 27-40
    • (1997) FEMS Microb. Ecol. , vol.24 , pp. 27-40
    • Acinas, S.G.1    Rodriiguez-Valera, F.2    Pedrós-Alió, C.3
  • 3
    • 28644434277 scopus 로고    scopus 로고
    • Pyrosequencing: history, biochemistry and future
    • Ahmadian A., Ehn M., and Hober S. Pyrosequencing: history, biochemistry and future. Clin. Chim. Acta 363 (2006) 83-94
    • (2006) Clin. Chim. Acta , vol.363 , pp. 83-94
    • Ahmadian, A.1    Ehn, M.2    Hober, S.3
  • 4
    • 29244448340 scopus 로고    scopus 로고
    • Microarray data analysis: from disarray to consolidation and consensus
    • Allison D.B., Cui X., Page G.P., and Sabripour M. Microarray data analysis: from disarray to consolidation and consensus. Nat. Rev. 7 (2006) 55-65
    • (2006) Nat. Rev. , vol.7 , pp. 55-65
    • Allison, D.B.1    Cui, X.2    Page, G.P.3    Sabripour, M.4
  • 5
    • 0035370087 scopus 로고    scopus 로고
    • The identification of microorganisms by fluorescence in situ hybridisation
    • Amann R., Fuchs B.M., and Behrens S. The identification of microorganisms by fluorescence in situ hybridisation. Curr. Opin. Biotechnol. 12 (2001) 231-236
    • (2001) Curr. Opin. Biotechnol. , vol.12 , pp. 231-236
    • Amann, R.1    Fuchs, B.M.2    Behrens, S.3
  • 6
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., and Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56 (1990) 1919-1925
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 7
    • 0028946084 scopus 로고
    • Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation
    • Amann R.I., Ludwig W., and Schleifer K.H. Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation. Microbiol. Rev. 59 (1995) 143-169
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 8
    • 33748808944 scopus 로고    scopus 로고
    • Molecular diversity, cultivation, and improved detection by fluorescent in situ hybridization of a dominant group of human gut bacteria related to Roseburia spp. or Eubacterium rectale
    • Aminov R.I., Walker A.W., Duncan S.H., Harmsen H.J.M., Welling G.W., and Flint H.J. Molecular diversity, cultivation, and improved detection by fluorescent in situ hybridization of a dominant group of human gut bacteria related to Roseburia spp. or Eubacterium rectale. Appl. Environ. Microbiol. 72 (2006) 6371-6376
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 6371-6376
    • Aminov, R.I.1    Walker, A.W.2    Duncan, S.H.3    Harmsen, H.J.M.4    Welling, G.W.5    Flint, H.J.6
  • 9
    • 0041153826 scopus 로고    scopus 로고
    • Polyphasic study of the spatial distribution of microorganisms in mexican pozol, a fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations
    • Ampe F., Omar N.B., Moizan C., Wacher C., and Guyot J.-P. Polyphasic study of the spatial distribution of microorganisms in mexican pozol, a fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations. Appl. Environ. Microbiol. 65 (1999) 5464-5473
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5464-5473
    • Ampe, F.1    Omar, N.B.2    Moizan, C.3    Wacher, C.4    Guyot, J.-P.5
  • 10
    • 0001262744 scopus 로고
    • Microbial changes in shredded iceberg lettuce stored under controlled atmospheres
    • Barriga M.I., Trachy G., Willemot C., and Simard R.E. Microbial changes in shredded iceberg lettuce stored under controlled atmospheres. J. Food Sci. 56 (1991) 1586-1588
    • (1991) J. Food Sci. , vol.56 , pp. 1586-1588
    • Barriga, M.I.1    Trachy, G.2    Willemot, C.3    Simard, R.E.4
  • 12
    • 2942527326 scopus 로고    scopus 로고
    • Oligonucleotide microarrays in microbial diagnostics
    • Bodrossy L., and Sessitsch A. Oligonucleotide microarrays in microbial diagnostics. Curr. Opin. Microbiol. 7 (2004) 245-254
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 245-254
    • Bodrossy, L.1    Sessitsch, A.2
  • 14
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman J., and Triplett E.W. Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63 (1997) 2647-2653
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 15
    • 23944517269 scopus 로고    scopus 로고
    • Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series
    • Brown M.V., Schwalbach M.S., Hewson I., and Fuhrman J.A. Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. Environ. Microbiol. 7 (2005) 1466-1479
    • (2005) Environ. Microbiol. , vol.7 , pp. 1466-1479
    • Brown, M.V.1    Schwalbach, M.S.2    Hewson, I.3    Fuhrman, J.A.4
  • 17
    • 0035935030 scopus 로고    scopus 로고
    • Microbial diversity in smoked salmon examined by a culture-independent molecular approach-a preliminary study
    • Cambon-Bonavita M.A., Lesongeur F., Menoux S., Lebourg A., and Barbier G. Microbial diversity in smoked salmon examined by a culture-independent molecular approach-a preliminary study. Int. J. Food Microbiol. 70 (2001) 179-187
    • (2001) Int. J. Food Microbiol. , vol.70 , pp. 179-187
    • Cambon-Bonavita, M.A.1    Lesongeur, F.2    Menoux, S.3    Lebourg, A.4    Barbier, G.5
  • 18
    • 33947371288 scopus 로고    scopus 로고
    • Dynamics and biodiversity of populations of lactic acid bacteria and acetic acid bacteria involved in spontaneous heap fermentation of cocoa beans in Ghana
    • Camu N., De Winter T., Verbrugghe K., Cleenwerck I., Vandamme P., Takrama J.S., Vancanneyt M., and De Vuyst L. Dynamics and biodiversity of populations of lactic acid bacteria and acetic acid bacteria involved in spontaneous heap fermentation of cocoa beans in Ghana. Appl. Environ. Microbiol. 73 (2007) 1809-1824
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 1809-1824
    • Camu, N.1    De Winter, T.2    Verbrugghe, K.3    Cleenwerck, I.4    Vandamme, P.5    Takrama, J.S.6    Vancanneyt, M.7    De Vuyst, L.8
  • 21
    • 34147182303 scopus 로고    scopus 로고
    • A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria
    • Chakravorty S., Helb D., Burday M., Connell N., and Alland D. A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. J. Microbiol. Methods 69 (2007) 330-339
    • (2007) J. Microbiol. Methods , vol.69 , pp. 330-339
    • Chakravorty, S.1    Helb, D.2    Burday, M.3    Connell, N.4    Alland, D.5
  • 22
    • 0031149569 scopus 로고    scopus 로고
    • Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries
    • Chandler D.P., Fredrickson J.K., and Brockman F.J. Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries. Mol. Ecol. 6 (1997) 475-482
    • (1997) Mol. Ecol. , vol.6 , pp. 475-482
    • Chandler, D.P.1    Fredrickson, J.K.2    Brockman, F.J.3
  • 23
    • 9944221446 scopus 로고    scopus 로고
    • Sequencing of an internal transcribed spacer region of 16S-23S rRNA gene and designing of PCR primers for the detection of Salmonella spp. in food
    • Chiu T.H., Chen T.R.H., Wang W.Z., and Tsen H.Y. Sequencing of an internal transcribed spacer region of 16S-23S rRNA gene and designing of PCR primers for the detection of Salmonella spp. in food. Int. J. Food Microbiol. 97 (2005) 259-265
    • (2005) Int. J. Food Microbiol. , vol.97 , pp. 259-265
    • Chiu, T.H.1    Chen, T.R.H.2    Wang, W.Z.3    Tsen, H.Y.4
  • 25
    • 0036193078 scopus 로고    scopus 로고
    • Quantitative detection of microbial genes by using DNA microarrays
    • Cho J.-C., and Tiedje J.M. Quantitative detection of microbial genes by using DNA microarrays. Appl. Environ. Microbiol. 68 (2002) 1425-1430
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1425-1430
    • Cho, J.-C.1    Tiedje, J.M.2
  • 27
    • 9744228256 scopus 로고    scopus 로고
    • Study of the ecology of fresh sausages and characterization of populations of lactic acid bacteria by molecular methods
    • Cocolin L., Rantsiou K., Iacumin L., Urso R., Cantoni C., and Comi G. Study of the ecology of fresh sausages and characterization of populations of lactic acid bacteria by molecular methods. Appl. Environ. Microbiol. 70 (2004) 1883-1894
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1883-1894
    • Cocolin, L.1    Rantsiou, K.2    Iacumin, L.3    Urso, R.4    Cantoni, C.5    Comi, G.6
  • 29
    • 0031767070 scopus 로고    scopus 로고
    • Enumeration of Carnobacterium divergens V41, Carnobacterium piscicola V1 and Lactobacillus brevis LB62 by in situ hybridisation-flow cytometry
    • Connil N., Dousset X., Onno B., Pilet M.F., Breuil M.F., and Montel M.C. Enumeration of Carnobacterium divergens V41, Carnobacterium piscicola V1 and Lactobacillus brevis LB62 by in situ hybridisation-flow cytometry. Lett. Appl. Microbiol. 27 (1998) 302-306
    • (1998) Lett. Appl. Microbiol. , vol.27 , pp. 302-306
    • Connil, N.1    Dousset, X.2    Onno, B.3    Pilet, M.F.4    Breuil, M.F.5    Montel, M.C.6
  • 30
    • 0033591467 scopus 로고    scopus 로고
    • Bacterial biofilms: a common cause of persistent infection
    • Costerton J.W., Stewart P.S., and Greenberg E.P. Bacterial biofilms: a common cause of persistent infection. Science 284 (1999) 1318-1322
    • (1999) Science , vol.284 , pp. 1318-1322
    • Costerton, J.W.1    Stewart, P.S.2    Greenberg, E.P.3
  • 31
    • 0037388225 scopus 로고    scopus 로고
    • Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity
    • 796, 798
    • Crosby L.D., and Criddle C.S. Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity. BioTechniques 34 (2003) 790-794 796, 798
    • (2003) BioTechniques , vol.34 , pp. 790-794
    • Crosby, L.D.1    Criddle, C.S.2
  • 32
    • 0141485438 scopus 로고    scopus 로고
    • Adhering to good cultural practices
    • Crous P.W. Adhering to good cultural practices. Mycol. Res. 106 (2002) 1377-1379
    • (2002) Mycol. Res. , vol.106 , pp. 1377-1379
    • Crous, P.W.1
  • 33
    • 0033860832 scopus 로고    scopus 로고
    • rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
    • Dahllöf I., Baillie H., and Kjelleberg S. rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl. Environ. Microbiol. 66 (2000) 3376-3380
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3376-3380
    • Dahllöf, I.1    Baillie, H.2    Kjelleberg, S.3
  • 34
    • 33846462490 scopus 로고    scopus 로고
    • Analysis of diversity and activity of sulfate-reducing bacterial communities in sulfidogenic bioreactors using 16S rRNA and dsrB genes as molecular markers
    • Dar S.A., Yao L., van Dongen U., Kuenen J.G., and Muyzer G. Analysis of diversity and activity of sulfate-reducing bacterial communities in sulfidogenic bioreactors using 16S rRNA and dsrB genes as molecular markers. Appl. Environ. Microbiol. 73 (2007) 594-604
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 594-604
    • Dar, S.A.1    Yao, L.2    van Dongen, U.3    Kuenen, J.G.4    Muyzer, G.5
  • 35
    • 33644856111 scopus 로고    scopus 로고
    • IWoCS: analyzing ribosomal intergenic transcribed spacers configuration and taxonomic relationships
    • D'Auria G., Pushker R., and Rodriguez-Valera F. IWoCS: analyzing ribosomal intergenic transcribed spacers configuration and taxonomic relationships. Bioinformatics 22 (2006) 527-531
    • (2006) Bioinformatics , vol.22 , pp. 527-531
    • D'Auria, G.1    Pushker, R.2    Rodriguez-Valera, F.3
  • 36
    • 33748648374 scopus 로고    scopus 로고
    • RNA extraction method from fruit tissue high in water and sugar
    • Davis A.R., Levi A., Kim S., Hernandez A., and King S.R. RNA extraction method from fruit tissue high in water and sugar. HortScience 41 (2006) 1292-1294
    • (2006) HortScience , vol.41 , pp. 1292-1294
    • Davis, A.R.1    Levi, A.2    Kim, S.3    Hernandez, A.4    King, S.R.5
  • 38
    • 33947355835 scopus 로고    scopus 로고
    • Monitoring bacterial communities in raw milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses
    • Delbès C., Ali-Mandjee L., and Montel M.C. Monitoring bacterial communities in raw milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses. Appl. Envrion. Microbiol. 73 (2007) 1882-1891
    • (2007) Appl. Envrion. Microbiol. , vol.73 , pp. 1882-1891
    • Delbès, C.1    Ali-Mandjee, L.2    Montel, M.C.3
  • 39
    • 46949104172 scopus 로고    scopus 로고
    • Delfini, C., Formica, J.V., 2001. Wine microbiology: science and technology. Marcel Dekker, New York, 496pp.
    • Delfini, C., Formica, J.V., 2001. Wine microbiology: science and technology. Marcel Dekker, New York, 496pp.
  • 40
    • 0024507744 scopus 로고
    • Phylogenetic stains: rRNA-based probes for the identification of single cells
    • DeLong E.F., Wickham G.S., and Pace N.R. Phylogenetic stains: rRNA-based probes for the identification of single cells. Science 243 (1989) 1360-1363
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 41
    • 0034794369 scopus 로고    scopus 로고
    • Molecular fingerprinting of bacterial populations in groundwater and bottled mineral water
    • Dewettinck T., Hulsbosch W., Hege K., Top E., and Verstraete W. Molecular fingerprinting of bacterial populations in groundwater and bottled mineral water. Appl. Microbiol. Biotechnol. 57 (2001) 412-418
    • (2001) Appl. Microbiol. Biotechnol. , vol.57 , pp. 412-418
    • Dewettinck, T.1    Hulsbosch, W.2    Hege, K.3    Top, E.4    Verstraete, W.5
  • 42
    • 0032914126 scopus 로고    scopus 로고
    • Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
    • Dunbar J., Takala S., Barns S.M., Davis J.A., and Kuske C.R. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65 (1999) 1662-1669
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1662-1669
    • Dunbar, J.1    Takala, S.2    Barns, S.M.3    Davis, J.A.4    Kuske, C.R.5
  • 43
    • 0037479834 scopus 로고    scopus 로고
    • Bacterial community dynamics during production of registered designation of origin salers cheese as evaluated by 16S rRNA gene single-strand conformation polymorphism analysis
    • Duthoit F., Godon J.J., and Montel M.C. Bacterial community dynamics during production of registered designation of origin salers cheese as evaluated by 16S rRNA gene single-strand conformation polymorphism analysis. Appl. Environ. Microbiol. 69 (2003) 3840-3848
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3840-3848
    • Duthoit, F.1    Godon, J.J.2    Montel, M.C.3
  • 45
    • 0038221194 scopus 로고    scopus 로고
    • Formation of pseudo-terminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure
    • Egert M., and Friedrich M.W. Formation of pseudo-terminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure. Appl. Environ. Microbiol. 69 (2003) 2555-2562
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2555-2562
    • Egert, M.1    Friedrich, M.W.2
  • 46
    • 33845415299 scopus 로고    scopus 로고
    • Multiple detection of food-borne pathogenic bacteria using 16S rDNA-based oligonucleotide signature chip
    • Eom H.S., Hwang B.H., Kim D.H., Lee I.B., Kim Y.H., and Cha H.J. Multiple detection of food-borne pathogenic bacteria using 16S rDNA-based oligonucleotide signature chip. Biosensors Bioelectron. 22 (2007) 845-853
    • (2007) Biosensors Bioelectron. , vol.22 , pp. 845-853
    • Eom, H.S.1    Hwang, B.H.2    Kim, D.H.3    Lee, I.B.4    Kim, Y.H.5    Cha, H.J.6
  • 47
    • 1142297453 scopus 로고    scopus 로고
    • PCR-DGGE fingerprinting: novel strategies for detection of microbes in food
    • Ercolini D. PCR-DGGE fingerprinting: novel strategies for detection of microbes in food. J. Microbiol. Methods 56 (2004) 297-314
    • (2004) J. Microbiol. Methods , vol.56 , pp. 297-314
    • Ercolini, D.1
  • 48
    • 0037640904 scopus 로고    scopus 로고
    • Bacterial community structure and location in stilton cheese
    • Ercolini D., Hill P.J., and Dodd C.E.R. Bacterial community structure and location in stilton cheese. Appl. Environ. Microbiol. 69 (2003) 3540-3548
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3540-3548
    • Ercolini, D.1    Hill, P.J.2    Dodd, C.E.R.3
  • 49
    • 1242329162 scopus 로고    scopus 로고
    • PCR-DGGE fingerprints of microbial succession during a manufacture of traditional water buffalo mozzarella cheese
    • Ercolini D., Mauriello G., Blaiotta G., Moschetti G., and Coppola S. PCR-DGGE fingerprints of microbial succession during a manufacture of traditional water buffalo mozzarella cheese. J. Appl. Microbiol. 96 (2004) 263-270
    • (2004) J. Appl. Microbiol. , vol.96 , pp. 263-270
    • Ercolini, D.1    Mauriello, G.2    Blaiotta, G.3    Moschetti, G.4    Coppola, S.5
  • 50
    • 33746101830 scopus 로고    scopus 로고
    • Changes in the spoilage-related microbiota of beef during refrigerated storage under different packaging conditions
    • Ercolini D., Russo F., Torrieri E., Masi P., and Villani F. Changes in the spoilage-related microbiota of beef during refrigerated storage under different packaging conditions. Appl. Environ. Microbiol. 72 (2006) 4663-4671
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4663-4671
    • Ercolini, D.1    Russo, F.2    Torrieri, E.3    Masi, P.4    Villani, F.5
  • 51
    • 0035961665 scopus 로고    scopus 로고
    • Lactic acid bacterial diversity in the traditional Mexican fermented dough pozol as determined by 16S rDNA sequence analysis
    • Escalante A., Wacher C., and Farrés A. Lactic acid bacterial diversity in the traditional Mexican fermented dough pozol as determined by 16S rDNA sequence analysis. Int. J. Food Microbiol. 64 (2001) 21-31
    • (2001) Int. J. Food Microbiol. , vol.64 , pp. 21-31
    • Escalante, A.1    Wacher, C.2    Farrés, A.3
  • 52
    • 84964321158 scopus 로고
    • Microbiological aspects of modified-atmosphere technology-a review
    • Faber J. Microbiological aspects of modified-atmosphere technology-a review. J. Food Prot. 54 (1991) 58-70
    • (1991) J. Food Prot. , vol.54 , pp. 58-70
    • Faber, J.1
  • 53
    • 0036011282 scopus 로고    scopus 로고
    • Pyrosequencing: an accurate detection platform for single nucleotide polymorphisms
    • Fakhrai-Rad H., Pourmand N., and Ronaghi M. Pyrosequencing: an accurate detection platform for single nucleotide polymorphisms. Hum. Mutat. 19 (2002) 479-485
    • (2002) Hum. Mutat. , vol.19 , pp. 479-485
    • Fakhrai-Rad, H.1    Pourmand, N.2    Ronaghi, M.3
  • 54
    • 0032879764 scopus 로고    scopus 로고
    • Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
    • Fisher M.M., and Triplett E.W. Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl. Environ. Microbiol. 65 (1999) 4630-4636
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 56
    • 33744969534 scopus 로고    scopus 로고
    • PCR-DGGE as a tool for characterizing dominant microbial populations in the Spanish blue-veined Cabrales cheese
    • Florez A.B., and Mayo B. PCR-DGGE as a tool for characterizing dominant microbial populations in the Spanish blue-veined Cabrales cheese. Int. Dairy J. 16 (2006) 1205-1210
    • (2006) Int. Dairy J. , vol.16 , pp. 1205-1210
    • Florez, A.B.1    Mayo, B.2
  • 57
    • 2942525588 scopus 로고    scopus 로고
    • Molecular microbial ecology: land of the one eyed king
    • Forney L.J., Zhou X., and Brown C.J. Molecular microbial ecology: land of the one eyed king. Curr. Opin. Microbiol. 7 (2004) 210-220
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 210-220
    • Forney, L.J.1    Zhou, X.2    Brown, C.J.3
  • 58
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox G.E., Wisotzkey J.D., and Jurtshuk P. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42 (1992) 166-170
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 59
    • 0030613341 scopus 로고    scopus 로고
    • Microbial succession during a field evaluation of phenol and toluene as the primary substrates for trichloroethene cometabolsim
    • Fries M.R., Hopkins G.D., McCarty P.L., Forney L.J., and Tiedje J.M. Microbial succession during a field evaluation of phenol and toluene as the primary substrates for trichloroethene cometabolsim. Appl. Environ. Microbiol. 63 (1997) 1515-1522
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1515-1522
    • Fries, M.R.1    Hopkins, G.D.2    McCarty, P.L.3    Forney, L.J.4    Tiedje, J.M.5
  • 60
    • 8344249371 scopus 로고    scopus 로고
    • Molecular quantification of lactic acid bacteria in fermented milk products using real-time quantitative PCR
    • Furet J.P., Quenee P., and Tailliez. . Molecular quantification of lactic acid bacteria in fermented milk products using real-time quantitative PCR. Int. J. Food Microbiol. 97 (2004) 197-207
    • (2004) Int. J. Food Microbiol. , vol.97 , pp. 197-207
    • Furet, J.P.1    Quenee, P.2    Tailliez., .3
  • 61
    • 33845472657 scopus 로고    scopus 로고
    • Listeria: a foodborne pathogen that knows how to survive
    • Gandhi M., and Chikindas M.L. Listeria: a foodborne pathogen that knows how to survive. Int. J. Food Microbiol. 113 (2007) 1-15
    • (2007) Int. J. Food Microbiol. , vol.113 , pp. 1-15
    • Gandhi, M.1    Chikindas, M.L.2
  • 64
    • 1242337998 scopus 로고    scopus 로고
    • rpoB-PCR amplified gene and temporal temperature gradient gel electroforese: a rapid tool to analyse bacterial strains representative of cold-smoked salmon microflora
    • Giacomazzi S., Leroi F., L'Henaff C., and Joffraud J.-J. rpoB-PCR amplified gene and temporal temperature gradient gel electroforese: a rapid tool to analyse bacterial strains representative of cold-smoked salmon microflora. Lett. Appl. Microbiol. 38 (2004) 130-134
    • (2004) Lett. Appl. Microbiol. , vol.38 , pp. 130-134
    • Giacomazzi, S.1    Leroi, F.2    L'Henaff, C.3    Joffraud, J.-J.4
  • 65
    • 1942453431 scopus 로고    scopus 로고
    • Studying the dynamics of microbial populations during food fermentation
    • Giraffa G. Studying the dynamics of microbial populations during food fermentation. FEMS Microbiol. Rev. 28 (2004) 251-260
    • (2004) FEMS Microbiol. Rev. , vol.28 , pp. 251-260
    • Giraffa, G.1
  • 66
    • 0035919814 scopus 로고    scopus 로고
    • DNA-based, culture-independent strategies for evaluating microbial communities in food-associated ecosystems
    • Giraffa G., and Neviani E. DNA-based, culture-independent strategies for evaluating microbial communities in food-associated ecosystems. Int. J. Food Microbiol. 67 (2001) 19-34
    • (2001) Int. J. Food Microbiol. , vol.67 , pp. 19-34
    • Giraffa, G.1    Neviani, E.2
  • 68
    • 0030297237 scopus 로고    scopus 로고
    • Microbiological spoilage of fish and fish products
    • Gram, and Huss. Microbiological spoilage of fish and fish products. Int. J. Food Microbiol. 33 (1996) 121-137
    • (1996) Int. J. Food Microbiol. , vol.33 , pp. 121-137
    • Gram1    Huss2
  • 69
    • 23744483488 scopus 로고    scopus 로고
    • Suicide endonuclease restriction, a novel technique for enhancing PCR amplification of minor DNA templates
    • Green S., and Minz D. Suicide endonuclease restriction, a novel technique for enhancing PCR amplification of minor DNA templates. Appl. Environ. Microbiol. 71 (2005) 4721-4727
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 4721-4727
    • Green, S.1    Minz, D.2
  • 70
    • 0037139169 scopus 로고    scopus 로고
    • Mutation analysis of the human CYP3A4 gene 5′ regulatory region: population screening using non-radioactive SSCP
    • Hamzeiy H., Vahdati-Mashhadian N., Edwards H.J., and Goldfarb P.S. Mutation analysis of the human CYP3A4 gene 5′ regulatory region: population screening using non-radioactive SSCP. Mutat. Res. 500 (2002) 103-110
    • (2002) Mutat. Res. , vol.500 , pp. 103-110
    • Hamzeiy, H.1    Vahdati-Mashhadian, N.2    Edwards, H.J.3    Goldfarb, P.S.4
  • 71
    • 0036893607 scopus 로고    scopus 로고
    • Design and use of a peptide nucleic acid for detection of the heteroplasmic low-frequency mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS) mutation in human mitochondrial DNA
    • Hancock D.K., Schwarz F.P., Song F., Wong L.J., and Levin B.C. Design and use of a peptide nucleic acid for detection of the heteroplasmic low-frequency mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS) mutation in human mitochondrial DNA. Clin. Chem. 48 (2002) 2155-2163
    • (2002) Clin. Chem. , vol.48 , pp. 2155-2163
    • Hancock, D.K.1    Schwarz, F.P.2    Song, F.3    Wong, L.J.4    Levin, B.C.5
  • 72
    • 24644504109 scopus 로고    scopus 로고
    • Culture free DGGE and cloning based monitoring of changes in bacterial communities of salad due to processing
    • Handschur M., Pinar G., Gallist B., Lubitz W., and Haslberger A.G. Culture free DGGE and cloning based monitoring of changes in bacterial communities of salad due to processing. Food Chem. Toxicol. 43 (2005) 1595-1605
    • (2005) Food Chem. Toxicol. , vol.43 , pp. 1595-1605
    • Handschur, M.1    Pinar, G.2    Gallist, B.3    Lubitz, W.4    Haslberger, A.G.5
  • 74
    • 0033980096 scopus 로고    scopus 로고
    • Specific and rapid detection by fluorescent in situ hybridization of bacteria in clinical samples obtained from cystic fibrosis patients
    • Hogardt M., Trebesius K., Geiger A.M., Hornef M., Rosenecker J., and Heesemann J. Specific and rapid detection by fluorescent in situ hybridization of bacteria in clinical samples obtained from cystic fibrosis patients. J. Clin. Microbiol. 38 (2000) 818-825
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 818-825
    • Hogardt, M.1    Trebesius, K.2    Geiger, A.M.3    Hornef, M.4    Rosenecker, J.5    Heesemann, J.6
  • 75
    • 46949097911 scopus 로고    scopus 로고
    • Holden, J.M., 2007. Development of sampling strategies for foods. In: EuroFIR FoodComp Course, October 16-21, 2006, Bratislava, Slovak Republic and Second Asia Foodcomp Course, November 4-17, 2006, Hyderbad, India.
    • Holden, J.M., 2007. Development of sampling strategies for foods. In: EuroFIR FoodComp Course, October 16-21, 2006, Bratislava, Slovak Republic and Second Asia Foodcomp Course, November 4-17, 2006, Hyderbad, India.
  • 76
    • 0142062399 scopus 로고    scopus 로고
    • Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from a natural environment
    • Hongoh Y., Yuzawa H., Okhuma M., and Kudo T. Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from a natural environment. FEMS Microbiol. Lett. 221 (2003) 299-304
    • (2003) FEMS Microbiol. Lett. , vol.221 , pp. 299-304
    • Hongoh, Y.1    Yuzawa, H.2    Okhuma, M.3    Kudo, T.4
  • 77
    • 34248207624 scopus 로고    scopus 로고
    • Characterisation of the bacterial flora of modified atmosphere packaged farmed Atlantic cod (Gadus morhua) by PCR-DGGE of conserved 16S rRNA gene regions
    • Hovda M.B., Lunestad B.T., Sivertsvik M., and Rosnes J.T. Characterisation of the bacterial flora of modified atmosphere packaged farmed Atlantic cod (Gadus morhua) by PCR-DGGE of conserved 16S rRNA gene regions. Int. J. Food Microbiol. 117 (2007) 168-175
    • (2007) Int. J. Food Microbiol. , vol.117 , pp. 168-175
    • Hovda, M.B.1    Lunestad, B.T.2    Sivertsvik, M.3    Rosnes, J.T.4
  • 78
    • 35748972353 scopus 로고    scopus 로고
    • Molecular characterisation of the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.)
    • Hovda M.B., Lunestad B.T., Fontanillas R., and Rosnes J.T. Molecular characterisation of the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.). Aquaculture 272 (2007) 581-588
    • (2007) Aquaculture , vol.272 , pp. 581-588
    • Hovda, M.B.1    Lunestad, B.T.2    Fontanillas, R.3    Rosnes, J.T.4
  • 79
    • 33750079868 scopus 로고    scopus 로고
    • Differences in microbial activity and microbial populations of peat associated with suppression of damping-off disease caused by Pythium sylvaticum
    • Hunter P.J., Petch G.M., Calvo-Bado L.A., Pettitt T.R., Parsons N.R., Morgan J.A., and Whipps J.M. Differences in microbial activity and microbial populations of peat associated with suppression of damping-off disease caused by Pythium sylvaticum. Appl. Environ. Microbiol. 72 (2006) 6452-6460
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 6452-6460
    • Hunter, P.J.1    Petch, G.M.2    Calvo-Bado, L.A.3    Pettitt, T.R.4    Parsons, N.R.5    Morgan, J.A.6    Whipps, J.M.7
  • 80
    • 9944256168 scopus 로고    scopus 로고
    • Phylogenetic analysis of bacterial communities associated with larvae of the atlantic Halibut propose succession from a uniform normal flora
    • Jensen S., Øvreås L., Bergh Ø., and Torsvik V. Phylogenetic analysis of bacterial communities associated with larvae of the atlantic Halibut propose succession from a uniform normal flora. Syst. Appl. Microbiol. 27 (2004) 728-736
    • (2004) Syst. Appl. Microbiol. , vol.27 , pp. 728-736
    • Jensen, S.1    Øvreås, L.2    Bergh, Ø.3    Torsvik, V.4
  • 81
    • 12244292700 scopus 로고    scopus 로고
    • Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism
    • Jernberg C., Sullivan A., Edlund C., and Jansson J.K. Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism. Appl. Environ. Microbiol. 71 (2005) 501-506
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 501-506
    • Jernberg, C.1    Sullivan, A.2    Edlund, C.3    Jansson, J.K.4
  • 85
    • 46949097363 scopus 로고    scopus 로고
    • Justé, A., Lievens, B., Frans, I., Klingeberg, M., Michiels, C.W., Willems, K.A., 2008d. Present knowledge of the bacterial microflora in the extreme environment of sugar thick juice. Food Microbiol., in press, doi:10.1016/j.fm.2008.04.010.
    • Justé, A., Lievens, B., Frans, I., Klingeberg, M., Michiels, C.W., Willems, K.A., 2008d. Present knowledge of the bacterial microflora in the extreme environment of sugar thick juice. Food Microbiol., in press, doi:10.1016/j.fm.2008.04.010.
  • 86
    • 0036840877 scopus 로고    scopus 로고
    • Differentiation of closely related Carnobacterium food isolates based on 16S-23S ribosomal DNA intergenic spacer region polymorphism
    • Kabadjova P., Dousset X., Le Cam V., and Prevost H. Differentiation of closely related Carnobacterium food isolates based on 16S-23S ribosomal DNA intergenic spacer region polymorphism. Appl. Environ. Microbiol. 68 (2002) 5358-5366
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5358-5366
    • Kabadjova, P.1    Dousset, X.2    Le Cam, V.3    Prevost, H.4
  • 87
    • 0037728487 scopus 로고    scopus 로고
    • Variation between observed and true terminal restriction fragment length is dependent on true TRF length and purine content
    • Kaplan C.W., and Kitts C.L. Variation between observed and true terminal restriction fragment length is dependent on true TRF length and purine content. J. Microbiol. Methods 54 (2003) 121-125
    • (2003) J. Microbiol. Methods , vol.54 , pp. 121-125
    • Kaplan, C.W.1    Kitts, C.L.2
  • 88
    • 0030897271 scopus 로고    scopus 로고
    • Identification and quantification of Bifidobacterium species isolated from food with genus-specific 16S rRNA-targeted probes by colony hybridization and PCR
    • Kaufmann P., Pfefferkorn A., Teuber M., and Meile L. Identification and quantification of Bifidobacterium species isolated from food with genus-specific 16S rRNA-targeted probes by colony hybridization and PCR. Appl. Environ. Microbiol. 63 (1997) 1268-1273
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1268-1273
    • Kaufmann, P.1    Pfefferkorn, A.2    Teuber, M.3    Meile, L.4
  • 89
    • 0242657463 scopus 로고    scopus 로고
    • Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities
    • Kent A.D., Smith D.J., Benson B.J., and Triplett E.W. Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. Appl. Environ. Microbiol. 69 (2003) 6768-6776
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 6768-6776
    • Kent, A.D.1    Smith, D.J.2    Benson, B.J.3    Triplett, E.W.4
  • 90
    • 23444444312 scopus 로고    scopus 로고
    • Bacterial community structure in kimchi, a Korean fermented vegetable food, as revealed by 16S rRNA gene analysis
    • Kim M., and Chun J. Bacterial community structure in kimchi, a Korean fermented vegetable food, as revealed by 16S rRNA gene analysis. Int. J. Food Microbiol. 103 (2005) 91-96
    • (2005) Int. J. Food Microbiol. , vol.103 , pp. 91-96
    • Kim, M.1    Chun, J.2
  • 92
    • 33845987492 scopus 로고    scopus 로고
    • HACCP effect on microbiological quality of minimally processed vegetables: a survey in six mass-catering establishments
    • Kokkinakis E.N., and Fragkiadakis G.A. HACCP effect on microbiological quality of minimally processed vegetables: a survey in six mass-catering establishments. Int. J. Food Sci. Technol. 42 (2007) 18-23
    • (2007) Int. J. Food Sci. Technol. , vol.42 , pp. 18-23
    • Kokkinakis, E.N.1    Fragkiadakis, G.A.2
  • 93
    • 0033427384 scopus 로고    scopus 로고
    • Analysis of brevibacteria on the surface of gruyère cheese detected by in situ hybridisation and by colony hybridisation
    • Kollöffel B., Meile L., and Teuber M. Analysis of brevibacteria on the surface of gruyère cheese detected by in situ hybridisation and by colony hybridisation. Lett. Appl. Microbiol. 29 (1999) 317-322
    • (1999) Lett. Appl. Microbiol. , vol.29 , pp. 317-322
    • Kollöffel, B.1    Meile, L.2    Teuber, M.3
  • 94
    • 33645754929 scopus 로고    scopus 로고
    • Application of DNA microarray technology for detection, identification, and characterization of food-borne pathogens
    • Kostrzynska M., and Bachand A. Application of DNA microarray technology for detection, identification, and characterization of food-borne pathogens. Can. J. Microbiol. 52 (2006) 1-8
    • (2006) Can. J. Microbiol. , vol.52 , pp. 1-8
    • Kostrzynska, M.1    Bachand, A.2
  • 95
    • 0032581244 scopus 로고    scopus 로고
    • Significance of microbial biofilms in food industry: a review
    • Kumar C.G., and Anand S.K. Significance of microbial biofilms in food industry: a review. Int. J. Food Microbiol. 42 (1998) 9-27
    • (1998) Int. J. Food Microbiol. , vol.42 , pp. 9-27
    • Kumar, C.G.1    Anand, S.K.2
  • 97
    • 16544385301 scopus 로고    scopus 로고
    • Identification of the bacterial community of maple sap by using amplified ribosomal DNA (rDNA) restriction analysis and rDNA sequencing
    • Lagacé L., Pitre M., Jacques M., and Roy D. Identification of the bacterial community of maple sap by using amplified ribosomal DNA (rDNA) restriction analysis and rDNA sequencing. Appl. Environ. Microbiol. 70 (2004) 2052-2060
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2052-2060
    • Lagacé, L.1    Pitre, M.2    Jacques, M.3    Roy, D.4
  • 98
    • 0027952597 scopus 로고
    • Rapid identification of rhizobia by restriction-fragment-length-polymorphism analysis of PCR-amplified 16S ribosomal RNA-genes
    • Laguerre G., Allard M.R., Revoy F., and Amarger N. Rapid identification of rhizobia by restriction-fragment-length-polymorphism analysis of PCR-amplified 16S ribosomal RNA-genes. Appl. Environ. Microbiol. 60 (1994) 56-63
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 56-63
    • Laguerre, G.1    Allard, M.R.2    Revoy, F.3    Amarger, N.4
  • 100
    • 4344700215 scopus 로고    scopus 로고
    • Evaluating real-time PCR for the quantification of distinct pathogens and indicator organisms in environmental samples
    • Lebuhn M., Effenberger M., Garcés G., Gronauer A., and Wilderer P.A. Evaluating real-time PCR for the quantification of distinct pathogens and indicator organisms in environmental samples. Water Sci. Technol. 50 (2004) 263-270
    • (2004) Water Sci. Technol. , vol.50 , pp. 263-270
    • Lebuhn, M.1    Effenberger, M.2    Garcés, G.3    Gronauer, A.4    Wilderer, P.A.5
  • 101
    • 0034528803 scopus 로고    scopus 로고
    • Single-strand conformation polymorphism of 16S rDNA Archae during start-up of an anaerobic digester
    • Leclerc M., Delbès C., Moletta R., and Godon J.J. Single-strand conformation polymorphism of 16S rDNA Archae during start-up of an anaerobic digester. FEMS Microbiol. Ecol. 34 (2001) 213-220
    • (2001) FEMS Microbiol. Ecol. , vol.34 , pp. 213-220
    • Leclerc, M.1    Delbès, C.2    Moletta, R.3    Godon, J.J.4
  • 102
    • 0029786831 scopus 로고    scopus 로고
    • Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism
    • Lee D.H., Zo Y.G., and Kim S.-J. Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism. Appl. Environ. Microbiol. 62 (1996) 3112-3120
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3112-3120
    • Lee, D.H.1    Zo, Y.G.2    Kim, S.-J.3
  • 103
    • 28044450594 scopus 로고    scopus 로고
    • Recent developments in pathogen detection arrays: implications for fungal plant pathogens and use in practice
    • Lievens B., and Thomma B.P.H.J. Recent developments in pathogen detection arrays: implications for fungal plant pathogens and use in practice. Phytopathology 95 (2005) 1374-1380
    • (2005) Phytopathology , vol.95 , pp. 1374-1380
    • Lievens, B.1    Thomma, B.P.H.J.2
  • 104
    • 33947371287 scopus 로고    scopus 로고
    • Improved fluorescent in situ hybridization method for detection of bacteria from activated sludge and river water by using DNA molecular beacons and flow cytometry
    • Lenaerts J., Lappin-Scott H.M., and Porter J. Improved fluorescent in situ hybridization method for detection of bacteria from activated sludge and river water by using DNA molecular beacons and flow cytometry. Appl. Environ. Microbiol. 73 (2007) 2020-2023
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 2020-2023
    • Lenaerts, J.1    Lappin-Scott, H.M.2    Porter, J.3
  • 105
    • 46949108545 scopus 로고    scopus 로고
    • Quantification in multiplex format as a challenging goal for plant pathogen molecular diagnostic assays
    • Lievens B., and Thomma B.P.H.J. Quantification in multiplex format as a challenging goal for plant pathogen molecular diagnostic assays. Pest Technol. 1 (2007) 17-26
    • (2007) Pest Technol. , vol.1 , pp. 17-26
    • Lievens, B.1    Thomma, B.P.H.J.2
  • 106
  • 110
    • 33846683416 scopus 로고    scopus 로고
    • Microbial community structure during oxygen-stimulated bioremediation in phenol-contaminated groundwater
    • Lin C.-W., Lai C.-Y., Chen L.-H., and Chiang W.-F. Microbial community structure during oxygen-stimulated bioremediation in phenol-contaminated groundwater. J. Hazard. Mater. 140 (2007) 221-229
    • (2007) J. Hazard. Mater. , vol.140 , pp. 221-229
    • Lin, C.-W.1    Lai, C.-Y.2    Chen, L.-H.3    Chiang, W.-F.4
  • 111
    • 1642333897 scopus 로고    scopus 로고
    • Listeria monocytogenes: comparative interpretation of mouse virulence assays
    • Liu D. Listeria monocytogenes: comparative interpretation of mouse virulence assays. FEMS Microbiol. Lett. 233 (2004) 159-164
    • (2004) FEMS Microbiol. Lett. , vol.233 , pp. 159-164
    • Liu, D.1
  • 112
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu W.T., Marsh T.L., Cheng H., and Forney L.J. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63 (1997) 4516-4522
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 114
    • 34248139890 scopus 로고    scopus 로고
    • Applications of nucleic acid microarrays in soil microbial ecology
    • Cooper J.E., and Rao J.R. (Eds), CABI Publishing, Wallingford, Oxfordshire, UK
    • Loy A., Taylor M.W., Bodrossy L., and Wagner M. Applications of nucleic acid microarrays in soil microbial ecology. In: Cooper J.E., and Rao J.R. (Eds). Molecular Approaches to Soil, Rhizosphere and Plant Microorganism Analysis vol. 1 (2006), CABI Publishing, Wallingford, Oxfordshire, UK 18-39
    • (2006) Molecular Approaches to Soil, Rhizosphere and Plant Microorganism Analysis , vol.1 , pp. 18-39
    • Loy, A.1    Taylor, M.W.2    Bodrossy, L.3    Wagner, M.4
  • 115
    • 1642318064 scopus 로고    scopus 로고
    • Real-time PCR in the microbiology laboratory
    • Mackay I.M. Real-time PCR in the microbiology laboratory. Clin. Microbiol. Infect. 10 (2004) 190-212
    • (2004) Clin. Microbiol. Infect. , vol.10 , pp. 190-212
    • Mackay, I.M.1
  • 118
  • 119
    • 27644505070 scopus 로고    scopus 로고
    • Culture-independent microbial community analysis with terminal restriction fragment length polymorphism
    • Marsh T.L. Culture-independent microbial community analysis with terminal restriction fragment length polymorphism. Methods Enzymol. 397 (2005) 308-329
    • (2005) Methods Enzymol. , vol.397 , pp. 308-329
    • Marsh, T.L.1
  • 120
    • 0033868092 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism Analysis Program, a web-based research tool for microbial community analysis
    • Marsh T.L., Saxman P., Cole J., and Tiedje J. Terminal restriction fragment length polymorphism Analysis Program, a web-based research tool for microbial community analysis. Appl. Environ. Microbiol. 66 (2000) 3616-3620
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3616-3620
    • Marsh, T.L.1    Saxman, P.2    Cole, J.3    Tiedje, J.4
  • 121
    • 33748790370 scopus 로고    scopus 로고
    • Rapid quantitative detection of Lactobacillus sakei in meat and fermented sausages by real-time PCR
    • Martin B., Jofré A., Garriga M., Pla M., and Aymerich T. Rapid quantitative detection of Lactobacillus sakei in meat and fermented sausages by real-time PCR. Appl. Environ. Microbiol. 72 (2006) 6040-6048
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 6040-6048
    • Martin, B.1    Jofré, A.2    Garriga, M.3    Pla, M.4    Aymerich, T.5
  • 122
    • 0034107387 scopus 로고    scopus 로고
    • A fluorescently-labelled rRNA targeted oligonucleotide probe for the in situ detection of G-bacteria of the genus Amaricoccus in activated sludge
    • Maszenan A.M., Seviour R.J., Patel B.K.C., and Wanner J. A fluorescently-labelled rRNA targeted oligonucleotide probe for the in situ detection of G-bacteria of the genus Amaricoccus in activated sludge. J. Appl. Microbiol. 88 (2000) 1-11
    • (2000) J. Appl. Microbiol. , vol.88 , pp. 1-11
    • Maszenan, A.M.1    Seviour, R.J.2    Patel, B.K.C.3    Wanner, J.4
  • 123
    • 25444501533 scopus 로고    scopus 로고
    • Ribosomal intergenic spacer (IGS) length variation across the Drosophilinae (Diptera: Drosophilidae)
    • Mateos M., and Markow T.A. Ribosomal intergenic spacer (IGS) length variation across the Drosophilinae (Diptera: Drosophilidae). BMC Evol. Biol. 5 (2005) 46-59
    • (2005) BMC Evol. Biol. , vol.5 , pp. 46-59
    • Mateos, M.1    Markow, T.A.2
  • 125
    • 0037466413 scopus 로고    scopus 로고
    • Identification, isolation and quantification of representative bacteria from fermented cassava dough using and integrated approach of culture-dependent and culture-independent methods
    • Miambi E., Guyot J.P., and Ampe F. Identification, isolation and quantification of representative bacteria from fermented cassava dough using and integrated approach of culture-dependent and culture-independent methods. Int. J. Food Microbiol. 82 (2003) 111-120
    • (2003) Int. J. Food Microbiol. , vol.82 , pp. 111-120
    • Miambi, E.1    Guyot, J.P.2    Ampe, F.3
  • 126
    • 0032812081 scopus 로고    scopus 로고
    • Optimization of terminal restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electroforesis
    • Moeseneder M.M., Arrieta J.M., Muyzer G., Winter C., and Herndl G.J. Optimization of terminal restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electroforesis. Appl. Environ. Microbiol. 65 (1999) 3518-3525
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3518-3525
    • Moeseneder, M.M.1    Arrieta, J.M.2    Muyzer, G.3    Winter, C.4    Herndl, G.J.5
  • 128
    • 0037315734 scopus 로고    scopus 로고
    • Specific detection of Arcobacter and Campylobacter strains in water and sewage by PCR and fluorescent in situ hybridization
    • Moreno Y., Botella S., Alonso J.L., Ferrús M.A., Hernández M., and Hernández J. Specific detection of Arcobacter and Campylobacter strains in water and sewage by PCR and fluorescent in situ hybridization. Appl. Environ. Microbiol. 69 (2003) 1181-1186
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1181-1186
    • Moreno, Y.1    Botella, S.2    Alonso, J.L.3    Ferrús, M.A.4    Hernández, M.5    Hernández, J.6
  • 129
    • 0028184602 scopus 로고
    • Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of 16S ribosomal RNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer C.L., Dobbs F.C., and Karl D.M. Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of 16S ribosomal RNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 60 (1994) 871-879
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 871-879
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 130
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G., and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73 (1998) 127-141
    • (1998) Antonie van Leeuwenhoek , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 131
    • 46949097144 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electroforesis (DGGE) and temperature gradient gel electroforese (TGGE) in microbial ecology
    • Muyzer G., Dewaal E.C., and Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electroforesis (DGGE) and temperature gradient gel electroforese (TGGE) in microbial ecology. Int. J. Gen. Mol. Microbiol. 73 (1993) 127-141
    • (1993) Int. J. Gen. Mol. Microbiol. , vol.73 , pp. 127-141
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 132
    • 23744493882 scopus 로고    scopus 로고
    • Fluorophore-labeled primers improve the sensitivity, versatility, and normalization of denaturing gradient gel electrophoresis
    • Neufeld J.D., and Mohn W.W. Fluorophore-labeled primers improve the sensitivity, versatility, and normalization of denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 71 (2005) 4893-4896
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 4893-4896
    • Neufeld, J.D.1    Mohn, W.W.2
  • 133
    • 0036242855 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
    • Nicolaisen M.H., and Ramsing N.B. Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J. Microbiol. Methods 50 (2002) 189-203
    • (2002) J. Microbiol. Methods , vol.50 , pp. 189-203
    • Nicolaisen, M.H.1    Ramsing, N.B.2
  • 134
    • 33748746842 scopus 로고    scopus 로고
    • Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells
    • Nocker A., Cheung C.-Y., and Camper A.K. Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells. J. Microbiol. Methods 67 (2006) 310-320
    • (2006) J. Microbiol. Methods , vol.67 , pp. 310-320
    • Nocker, A.1    Cheung, C.-Y.2    Camper, A.K.3
  • 135
    • 34648836775 scopus 로고    scopus 로고
    • Development of a multiplex real-time PCR assay with an internal amplification control for the detection of total and pathogenic Vibrio parahaemolyticus bacteria in oysters
    • Nordstrom J.L., Vickery M.C.L., Blackstone G.M., Murray S.L., and DePaola A. Development of a multiplex real-time PCR assay with an internal amplification control for the detection of total and pathogenic Vibrio parahaemolyticus bacteria in oysters. Appl. Environ. Microbiol. 73 (2007) 5840-5847
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5840-5847
    • Nordstrom, J.L.1    Vickery, M.C.L.2    Blackstone, G.M.3    Murray, S.L.4    DePaola, A.5
  • 136
    • 0036325188 scopus 로고    scopus 로고
    • Identification of the bacterial microflora in dairy for the detection of total and pathogenic Vibrio parahaemolyticus bacteria in oysters
    • Ogier J.C., Son O., Gruss A., Tailliez P., and Delacroix-Buchet A. Identification of the bacterial microflora in dairy for the detection of total and pathogenic Vibrio parahaemolyticus bacteria in oysters. Appl. Environ. Microbiol. 68 (2002) 3691-3701
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3691-3701
    • Ogier, J.C.1    Son, O.2    Gruss, A.3    Tailliez, P.4    Delacroix-Buchet, A.5
  • 139
    • 0024595101 scopus 로고
    • Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms
    • Orita M., Iwahana H., Kanazawa H., Hayashi K., and Sekiya T. Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc. Natl. Acad. Sci. USA 86 (1989) 2766-2770
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 2766-2770
    • Orita, M.1    Iwahana, H.2    Kanazawa, H.3    Hayashi, K.4    Sekiya, T.5
  • 141
    • 0034547801 scopus 로고    scopus 로고
    • An evaluation of terminal restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
    • Osborn A.M., Moore E.R.B., and Timmis K.N. An evaluation of terminal restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2 (2000) 39-50
    • (2000) Environ. Microbiol. , vol.2 , pp. 39-50
    • Osborn, A.M.1    Moore, E.R.B.2    Timmis, K.N.3
  • 142
    • 33144466522 scopus 로고    scopus 로고
    • New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities
    • Osborne C.A., Rees G.N., Bernstein Y., and Janssen P.H. New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities. Appl. Environ. Microbiol. 72 (2006) 1270-1278
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1270-1278
    • Osborne, C.A.1    Rees, G.N.2    Bernstein, Y.3    Janssen, P.H.4
  • 143
    • 33749382349 scopus 로고    scopus 로고
    • Molecular analysis of ammonia-oxidizing bacteria community in intermittent aeration sequencing batch reactors used for animal wastewater treatment
    • Otawa K., Asano R., Ohba Y., Sasaki T., Kawamura E., Koyama F., Nakamura S., and Nakai Y. Molecular analysis of ammonia-oxidizing bacteria community in intermittent aeration sequencing batch reactors used for animal wastewater treatment. Environ. Microbiol. 8 (2006) 1985-1996
    • (2006) Environ. Microbiol. , vol.8 , pp. 1985-1996
    • Otawa, K.1    Asano, R.2    Ohba, Y.3    Sasaki, T.4    Kawamura, E.5    Koyama, F.6    Nakamura, S.7    Nakai, Y.8
  • 144
    • 0034127563 scopus 로고    scopus 로고
    • Population and community level approaches for analysing microbial diversity in natural environments
    • Øvreås L. Population and community level approaches for analysing microbial diversity in natural environments. Ecol. Lett. 3 (2000) 236-251
    • (2000) Ecol. Lett. , vol.3 , pp. 236-251
    • Øvreås, L.1
  • 145
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data
    • Palys T., Nakamura L.K., and Cohan F.M. Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int. J. Syst. Bacteriol. 47 (1997) 1145-1156
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 146
    • 0034073254 scopus 로고    scopus 로고
    • Protein coding genes as molecular markers for ecologically distinct populations: the case of two Bacillus species
    • Palys T., Berger E., Mitrica I., Nakamura L.K., and Cohan F.M. Protein coding genes as molecular markers for ecologically distinct populations: the case of two Bacillus species. Int. J. Syst. Bacteriol. 50 (2000) 1021-1028
    • (2000) Int. J. Syst. Bacteriol. , vol.50 , pp. 1021-1028
    • Palys, T.1    Berger, E.2    Mitrica, I.3    Nakamura, L.K.4    Cohan, F.M.5
  • 147
    • 33847298917 scopus 로고    scopus 로고
    • Variations in T-RFLP profiles with differing chemistries of fluorescent dyes used for labeling the PCR primers
    • Pandey J., Ganesan K., and Jain R.K. Variations in T-RFLP profiles with differing chemistries of fluorescent dyes used for labeling the PCR primers. J. Microbiol. Methods 68 (2007) 633-638
    • (2007) J. Microbiol. Methods , vol.68 , pp. 633-638
    • Pandey, J.1    Ganesan, K.2    Jain, R.K.3
  • 148
    • 22044449755 scopus 로고    scopus 로고
    • Improvements for comparative analysis of changes in diversity of microbial communities using internal standards in PCR-DGGE
    • Petersen D.G., and Dahllöf I. Improvements for comparative analysis of changes in diversity of microbial communities using internal standards in PCR-DGGE. FEMS Microbiol. Ecol. 53 (2005) 339-348
    • (2005) FEMS Microbiol. Ecol. , vol.53 , pp. 339-348
    • Petersen, D.G.1    Dahllöf, I.2
  • 149
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • Polz M.F., and Cavanaugh C.M. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64 (1998) 3724-3730
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 151
    • 24644441291 scopus 로고    scopus 로고
    • Location and DGGE methodology can influence interpretation of field experimental studies on the response to hydrocarbons by Antarctic benthic microbial community
    • Powell S.M., Riddle M.J., Snape I., and Stark J.S. Location and DGGE methodology can influence interpretation of field experimental studies on the response to hydrocarbons by Antarctic benthic microbial community. Antarctic Sci. 17 (2005) 353-360
    • (2005) Antarctic Sci. , vol.17 , pp. 353-360
    • Powell, S.M.1    Riddle, M.J.2    Snape, I.3    Stark, J.S.4
  • 152
    • 0032802330 scopus 로고    scopus 로고
    • Use of PNA oligonucleotides for the in situ detection of Escherichia coli in water
    • Prescott A.M., and Fricker C.R. Use of PNA oligonucleotides for the in situ detection of Escherichia coli in water. Mol. Cell. Probes 13 (1999) 261-268
    • (1999) Mol. Cell. Probes , vol.13 , pp. 261-268
    • Prescott, A.M.1    Fricker, C.R.2
  • 153
    • 19744376363 scopus 로고    scopus 로고
    • The surface microflora dynamics of bacterial smear-ripened Tilsit cheese determined by T-RFLP DNA population fingerprint analysis
    • Rademaker J.L.W., Peinhopf M., Rijnen L., Bockelmann W., and Noordman W.H. The surface microflora dynamics of bacterial smear-ripened Tilsit cheese determined by T-RFLP DNA population fingerprint analysis. Int.
    • (2005) Int. Dairy J. , vol.15 , pp. 785-794
    • Rademaker, J.L.W.1    Peinhopf, M.2    Rijnen, L.3    Bockelmann, W.4    Noordman, W.H.5
  • 154
    • 30844433319 scopus 로고    scopus 로고
    • Assessment of microbial population dynamics during yoghurt and hard cheese fermentation and ripening by DNA population fingerprinting
    • Rademaker J.L.W., Hoolwerf J.D., Wagendorp A.A., and te Giffel M.C. Assessment of microbial population dynamics during yoghurt and hard cheese fermentation and ripening by DNA population fingerprinting. Int. Dairy J. 16 (2006) 457-466
    • (2006) Int. Dairy J. , vol.16 , pp. 457-466
    • Rademaker, J.L.W.1    Hoolwerf, J.D.2    Wagendorp, A.A.3    te Giffel, M.C.4
  • 156
    • 35348933745 scopus 로고    scopus 로고
    • Multivariate analyses in microbial ecology
    • Ramette A. Multivariate analyses in microbial ecology. FEMS Microbiol. Ecol. 62 (2007) 142-160
    • (2007) FEMS Microbiol. Ecol. , vol.62 , pp. 142-160
    • Ramette, A.1
  • 157
    • 0036211215 scopus 로고    scopus 로고
    • Diversity, dynamics, and activity of bacterial communities during production of an artisanal Sicilian cheese as evaluated by 16S rRNA analysis
    • Randazzo C.L., Torriani S., Akkermans A.D.L., de Vos W.M., and Vaughan E.E. Diversity, dynamics, and activity of bacterial communities during production of an artisanal Sicilian cheese as evaluated by 16S rRNA analysis. Appl. Environ. Microbiol. 68 (2002) 1882-1892
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1882-1892
    • Randazzo, C.L.1    Torriani, S.2    Akkermans, A.D.L.3    de Vos, W.M.4    Vaughan, E.E.5
  • 158
    • 0035489392 scopus 로고    scopus 로고
    • Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability
    • Ranjard L., Poly F., Lata J.C., Mougel C., Thioulouse J., and Nazaret S. Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability. Appl. Environ. Microbiol. 67 (2001) 4479-4487
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4479-4487
    • Ranjard, L.1    Poly, F.2    Lata, J.C.3    Mougel, C.4    Thioulouse, J.5    Nazaret, S.6
  • 159
    • 17444365485 scopus 로고    scopus 로고
    • Culture-dependent and -independent methods to investigate the microbial ecology of Italian fermented sausages
    • Rantsiou K., Urso R., Iacumin L., Cantoni C., Cattaneo P., Comi G., and Cocolin L. Culture-dependent and -independent methods to investigate the microbial ecology of Italian fermented sausages. Appl. Environ. Microbiol. 71 (2005) 1977-1986
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1977-1986
    • Rantsiou, K.1    Urso, R.2    Iacumin, L.3    Cantoni, C.4    Cattaneo, P.5    Comi, G.6    Cocolin, L.7
  • 160
    • 33645961598 scopus 로고    scopus 로고
    • Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure
    • Rasche F., Hodl V., Poll C., Kandeler E., Gerzabek M.H., van Elsas J.D., and Sessitsch A. Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure. FEMS Microbiol. Ecol. 56 (2006) 219-235
    • (2006) FEMS Microbiol. Ecol. , vol.56 , pp. 219-235
    • Rasche, F.1    Hodl, V.2    Poll, C.3    Kandeler, E.4    Gerzabek, M.H.5    van Elsas, J.D.6    Sessitsch, A.7
  • 161
  • 163
    • 0035153070 scopus 로고    scopus 로고
    • Pyrosequencing sheds light on DNA sequencing
    • Ronaghi M. Pyrosequencing sheds light on DNA sequencing. Genome Res. 11 (2001) 3-11
    • (2001) Genome Res. , vol.11 , pp. 3-11
    • Ronaghi, M.1
  • 165
    • 0032540905 scopus 로고    scopus 로고
    • DNA SEQUENCING: a sequencing method based on real-time pyrophosphate
    • Ronaghi M., Uhlén M., and Nyrén P. DNA SEQUENCING: a sequencing method based on real-time pyrophosphate. Science 17 (1998) 363-365
    • (1998) Science , vol.17 , pp. 363-365
    • Ronaghi, M.1    Uhlén, M.2    Nyrén, P.3
  • 166
    • 0026678203 scopus 로고
    • Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA-extraction solutions
    • Rossen L., Nørskov P., Holmstrøm K., and Rasmussen O.F. Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA-extraction solutions. Int. J. Food Microbiol. 17 (1992) 37-45
    • (1992) Int. J. Food Microbiol. , vol.17 , pp. 37-45
    • Rossen, L.1    Nørskov, P.2    Holmstrøm, K.3    Rasmussen, O.F.4
  • 167
    • 33747070044 scopus 로고    scopus 로고
    • Evaluation of recA gene as a phylogenetic marker in the classification of dairy propionibacteria
    • Rossi F., Dellaglio F., and Torriani S. Evaluation of recA gene as a phylogenetic marker in the classification of dairy propionibacteria. Syst. Appl. Microbiol. 29 (2006) 463-469
    • (2006) Syst. Appl. Microbiol. , vol.29 , pp. 463-469
    • Rossi, F.1    Dellaglio, F.2    Torriani, S.3
  • 168
    • 46949097441 scopus 로고    scopus 로고
    • Bioinformatics for DNA sequence-based microbiota analyses
    • Cocolin L., and Ercolini D. (Eds), Springer, New York, USA
    • Rudi K. Bioinformatics for DNA sequence-based microbiota analyses. In: Cocolin L., and Ercolini D. (Eds). Molecular Techniques in the Microbial Ecology of Fermented Foods (2008), Springer, New York, USA 245-254
    • (2008) Molecular Techniques in the Microbial Ecology of Fermented Foods , pp. 245-254
    • Rudi, K.1
  • 169
    • 0036193194 scopus 로고    scopus 로고
    • Development and evaluation of a 16S ribosomal DNA array-based approach for describing complex microbial communities in ready-to-eat vegetable salads packed in a modified atmosphere
    • Rudi K., Flateland S.L., Hanssen J.F., Bengtsson G., and Nissen H. Development and evaluation of a 16S ribosomal DNA array-based approach for describing complex microbial communities in ready-to-eat vegetable salads packed in a modified atmosphere. Appl. Environ. Microbiol. 68 (2002) 1146-1156
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1146-1156
    • Rudi, K.1    Flateland, S.L.2    Hanssen, J.F.3    Bengtsson, G.4    Nissen, H.5
  • 170
    • 4143060529 scopus 로고    scopus 로고
    • Explorative multivariate analyses of 16S rRNA gene data from microbial communities in modified-atmosphere-packed salmon and coalfish
    • Rudi K., Maugesten T., Hannevik S.E., and Hilde Nissen H. Explorative multivariate analyses of 16S rRNA gene data from microbial communities in modified-atmosphere-packed salmon and coalfish. Appl. Environ. Microbiol. 70 (2004) 5010-5018
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5010-5018
    • Rudi, K.1    Maugesten, T.2    Hannevik, S.E.3    Hilde Nissen, H.4
  • 171
    • 13544254304 scopus 로고    scopus 로고
    • Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples
    • Rudi K., Moen B., Drømtorp S.M., and Holck A.L. Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples. Appl. Environ. Microbiol. 71 (2005) 1018-1024
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1018-1024
    • Rudi, K.1    Moen, B.2    Drømtorp, S.M.3    Holck, A.L.4
  • 172
    • 35748932694 scopus 로고    scopus 로고
    • Use of multivariate statistics for 16S rRNA gene analysis of microbial communities
    • Rudi K., Zimonja M., Trosvik P., and Naes T. Use of multivariate statistics for 16S rRNA gene analysis of microbial communities. Int. J. Food Microbiol. 120 (2007) 95-99
    • (2007) Int. J. Food Microbiol. , vol.120 , pp. 95-99
    • Rudi, K.1    Zimonja, M.2    Trosvik, P.3    Naes, T.4
  • 173
    • 0001442557 scopus 로고
    • Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes
    • Saiki R.K., Walsh P.S., Levenson C.H., and Erlich H.A. Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes. Proc. Natl. Acad. Sci. USA 86 (1989) 6230-6234
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 6230-6234
    • Saiki, R.K.1    Walsh, P.S.2    Levenson, C.H.3    Erlich, H.A.4
  • 174
    • 33645969304 scopus 로고    scopus 로고
    • Application of reverse transcriptase PCR-based T-RFLP to perform semi-quantitative analysis of metabolically active bacteria in dairy fermentations
    • Sanchez J.I., Rossetti L., Martinez B., Rodriguez A., and Giraffa G. Application of reverse transcriptase PCR-based T-RFLP to perform semi-quantitative analysis of metabolically active bacteria in dairy fermentations. J. Microbiol. Methods 65 (2006) 268-277
    • (2006) J. Microbiol. Methods , vol.65 , pp. 268-277
    • Sanchez, J.I.1    Rossetti, L.2    Martinez, B.3    Rodriguez, A.4    Giraffa, G.5
  • 175
  • 176
    • 0042377782 scopus 로고    scopus 로고
    • Thick juice degradation during storage
    • Sargent D., Briggs B., and Spencer S. Thick juice degradation during storage. Zuckerindustrie 122 (1997) 615-621
    • (1997) Zuckerindustrie , vol.122 , pp. 615-621
    • Sargent, D.1    Briggs, B.2    Spencer, S.3
  • 177
    • 0029155053 scopus 로고
    • A combined biological amplification (BIO-PCR) technique to detect Pseudomonas syringae pv. phaseolicola in bean seed extracts
    • Schaad N.W., Cheong S., Tamaki S., Hatziloukas E., and Panopoulas N.J. A combined biological amplification (BIO-PCR) technique to detect Pseudomonas syringae pv. phaseolicola in bean seed extracts. Phytopathology 85 (1995) 243-248
    • (1995) Phytopathology , vol.85 , pp. 243-248
    • Schaad, N.W.1    Cheong, S.2    Tamaki, S.3    Hatziloukas, E.4    Panopoulas, N.J.5
  • 178
    • 0030200630 scopus 로고    scopus 로고
    • Molecular differentiation of bacteria by PCR amplification of the 16S-23S rRNA spacer
    • Scheinert P., Krausse R., Ullman U., Soller R., and Krupp G. Molecular differentiation of bacteria by PCR amplification of the 16S-23S rRNA spacer. J. Microbiol. Methods 26 (1996) 103-117
    • (1996) J. Microbiol. Methods , vol.26 , pp. 103-117
    • Scheinert, P.1    Krausse, R.2    Ullman, U.3    Soller, R.4    Krupp, G.5
  • 179
    • 0142091645 scopus 로고    scopus 로고
    • Tracking temporal changes of bacterial community fingerprints during the initial stages of composting
    • Schloss P.D., Hay A.G., Wilson D.B., and Walker L.P. Tracking temporal changes of bacterial community fingerprints during the initial stages of composting. FEMS Microbiol. Ecol. 46 (2003) 1-9
    • (2003) FEMS Microbiol. Ecol. , vol.46 , pp. 1-9
    • Schloss, P.D.1    Hay, A.G.2    Wilson, D.B.3    Walker, L.P.4
  • 180
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
    • Schwieger F., and Tebbe C.C. A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl. Environ. Microbiol. 64 (1998) 4870-4876
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 181
    • 8144222448 scopus 로고    scopus 로고
    • Flow sorting of marine bacterioplankton after fluorescence in situ hybridization
    • Sekar R., Fuchs B.M., Amann R., and Pernthaler J. Flow sorting of marine bacterioplankton after fluorescence in situ hybridization. Appl. Environ. Microbiol. 70 (2004) 6210-6219
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 6210-6219
    • Sekar, R.1    Fuchs, B.M.2    Amann, R.3    Pernthaler, J.4
  • 182
    • 0034857157 scopus 로고    scopus 로고
    • A single band does not always represent single bacterial strains in denaturing gradient gel electrophoresis analysis
    • Sekiguchi H., Tomioka N., Nakahara T., and Uchiyama H. A single band does not always represent single bacterial strains in denaturing gradient gel electrophoresis analysis. Biotechnol. Lett. 23 (2001) 1205-1208
    • (2001) Biotechnol. Lett. , vol.23 , pp. 1205-1208
    • Sekiguchi, H.1    Tomioka, N.2    Nakahara, T.3    Uchiyama, H.4
  • 183
    • 0030891308 scopus 로고    scopus 로고
    • Separation of DNA strands facilitates detection of point mutations by PCR-SSCP
    • Selvakumar N., Ding B.C., and Wilson S.M. Separation of DNA strands facilitates detection of point mutations by PCR-SSCP. Biotechniques 22 (1997) 604-606
    • (1997) Biotechniques , vol.22 , pp. 604-606
    • Selvakumar, N.1    Ding, B.C.2    Wilson, S.M.3
  • 184
    • 0000023099 scopus 로고
    • Attachment of a 40-base-pair G+C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single base changes
    • Sheffield V.C., Cox D.R., Lerman L.S., and Myers R.M. Attachment of a 40-base-pair G+C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single base changes. Proc. Natl. Acad. Sci. USA 86 (1989) 232-236
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 232-236
    • Sheffield, V.C.1    Cox, D.R.2    Lerman, L.S.3    Myers, R.M.4
  • 185
    • 34248571862 scopus 로고    scopus 로고
    • MiCA: A web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes
    • Shyu C., Soule T., Bent S.J., Foster J.A., Larry J., and Forney L.J. MiCA: A web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes. Microb. Ecol. 53 (2007) 562-570
    • (2007) Microb. Ecol. , vol.53 , pp. 562-570
    • Shyu, C.1    Soule, T.2    Bent, S.J.3    Foster, J.A.4    Larry, J.5    Forney, L.J.6
  • 186
    • 0030049951 scopus 로고    scopus 로고
    • DNA extraction and PCR methods for the detection of Listeria monocytogenes in cold-smoked salmon
    • Simon M.C., Gray D.I., and Cook N. DNA extraction and PCR methods for the detection of Listeria monocytogenes in cold-smoked salmon. Appl. Environ. Microbiol. 62 (1996) 822-824
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 822-824
    • Simon, M.C.1    Gray, D.I.2    Cook, N.3
  • 187
    • 0035463837 scopus 로고    scopus 로고
    • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
    • Singleton D.R., Furlong M.A., Rathbun S.L., and Whitman W.B. Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl. Environ. Microbiol. 67 (2001) 4374-4376
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4374-4376
    • Singleton, D.R.1    Furlong, M.A.2    Rathbun, S.L.3    Whitman, W.B.4
  • 188
    • 1642296563 scopus 로고    scopus 로고
    • Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling
    • Sliwinski M.K., and Goodman R.M. Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling. Appl. Environ. Microbiol. 70 (2004) 1811-1820
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1811-1820
    • Sliwinski, M.K.1    Goodman, R.M.2
  • 189
    • 0032143102 scopus 로고    scopus 로고
    • Rapid and sensitive in situ hybridization method for detecting and identifying lactic acid bacteria in wine
    • Sohier D., and Lonvaud-Funel A. Rapid and sensitive in situ hybridization method for detecting and identifying lactic acid bacteria in wine. Food Microbiol. 15 (1998) 391-397
    • (1998) Food Microbiol. , vol.15 , pp. 391-397
    • Sohier, D.1    Lonvaud-Funel, A.2
  • 191
    • 0344430318 scopus 로고    scopus 로고
    • The variable part of the dnaK gene as an alternative marker for phylogenetic studies of Rhizobia and related alpha Proteobacteria
    • Ste{combining retroflex hook below}pkowski T., Czaplińska M., Miedzinska K., and Moulin L. The variable part of the dnaK gene as an alternative marker for phylogenetic studies of Rhizobia and related alpha Proteobacteria. Syst. Appl. Microbiol. 26 (2003) 483-494
    • (2003) Syst. Appl. Microbiol. , vol.26 , pp. 483-494
    • Stepkowski, T.1    Czaplińska, M.2    Miedzinska, K.3    Moulin, L.4
  • 193
    • 8144229009 scopus 로고    scopus 로고
    • Bacterial community structure and diversity in a century-old manure-treated agroecosystem
    • Sun H.Y., Deng S.P., and Raun W.R. Bacterial community structure and diversity in a century-old manure-treated agroecosystem. Appl. Environ. Microbiol. 70 (2004) 5868-5874
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5868-5874
    • Sun, H.Y.1    Deng, S.P.2    Raun, W.R.3
  • 194
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki M.T., and Giovanni S.J. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62 (1996) 625-630
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovanni, S.J.2
  • 196
    • 85045498816 scopus 로고
    • Development of a sensitive reverse transcriptase PCR assay, RT-PCR, utilizing rapid cycle times
    • Tan S.S., and Weis J.H. Development of a sensitive reverse transcriptase PCR assay, RT-PCR, utilizing rapid cycle times. PCR Methods Appl. 2 (1992) 137-143
    • (1992) PCR Methods Appl. , vol.2 , pp. 137-143
    • Tan, S.S.1    Weis, J.H.2
  • 197
    • 2342521512 scopus 로고    scopus 로고
    • Identification of lactic acid bacteria: culture-independent and culture-dependent methods
    • Temmerman R., Huys G., and Swings J. Identification of lactic acid bacteria: culture-independent and culture-dependent methods. Trends Food Sci. Technol. 15 (2004) 348-359
    • (2004) Trends Food Sci. Technol. , vol.15 , pp. 348-359
    • Temmerman, R.1    Huys, G.2    Swings, J.3
  • 199
    • 12444288552 scopus 로고    scopus 로고
    • Microbial composition of biofilms in a brewery investigated by fatty acid analysis, fluorescence in situ hybridisation and isolation techniques
    • Timke M., Wolking D., Wang-Lieu N.Q., Altendorf K., and Lipski A. Microbial composition of biofilms in a brewery investigated by fatty acid analysis, fluorescence in situ hybridisation and isolation techniques. Appl. Microbiol. Biotechnol. 66 (2004) 100-107
    • (2004) Appl. Microbiol. Biotechnol. , vol.66 , pp. 100-107
    • Timke, M.1    Wolking, D.2    Wang-Lieu, N.Q.3    Altendorf, K.4    Lipski, A.5
  • 200
    • 27444441663 scopus 로고    scopus 로고
    • Fatty acid analysis and spoilage potential of biofilms from two breweries
    • Timke M., Wang-Lieu N.Q., Altendorf K., and Lipski A. Fatty acid analysis and spoilage potential of biofilms from two breweries. J. Appl. Microbiol. 99 (2005) 1108-1122
    • (2005) J. Appl. Microbiol. , vol.99 , pp. 1108-1122
    • Timke, M.1    Wang-Lieu, N.Q.2    Altendorf, K.3    Lipski, A.4
  • 201
    • 26844554341 scopus 로고    scopus 로고
    • Community structure and diversity of biofilms from a beer bottling plant as revealed using 16S rRNA gene clone libraries
    • Timke M., Wang-Lieu N.Q., Altendorf K., and Lipski A. Community structure and diversity of biofilms from a beer bottling plant as revealed using 16S rRNA gene clone libraries. Appl. Environ. Microbiol. 71 (2005) 6446-6452
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 6446-6452
    • Timke, M.1    Wang-Lieu, N.Q.2    Altendorf, K.3    Lipski, A.4
  • 203
    • 23944517743 scopus 로고    scopus 로고
    • Cultivating the uncultivated: a community genomics perspective
    • Tyson G.W., and Banfield J.F. Cultivating the uncultivated: a community genomics perspective. Trends Microbiol. 13 (2005) 411-415
    • (2005) Trends Microbiol. , vol.13 , pp. 411-415
    • Tyson, G.W.1    Banfield, J.F.2
  • 204
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • Tyson G.W., Chapman J., Hugenholtz P., Allen E.E., Ram R.J., et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428 (2004) 37-43
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1    Chapman, J.2    Hugenholtz, P.3    Allen, E.E.4    Ram, R.J.5
  • 208
    • 0242657388 scopus 로고    scopus 로고
    • Analysis, characterization, and loci of the tuf genes in Lactobacillus and Bifidobacterium species and their direct application for species identification
    • Ventura M., Canchaya C., Meylan V., Klaenhammer T.R., and Zink R. Analysis, characterization, and loci of the tuf genes in Lactobacillus and Bifidobacterium species and their direct application for species identification. Appl. Environ. Microbiol. 69 (2003) 6908-6922
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 6908-6922
    • Ventura, M.1    Canchaya, C.2    Meylan, V.3    Klaenhammer, T.R.4    Zink, R.5
  • 209
    • 0036899178 scopus 로고    scopus 로고
    • Identification of Listeria species by microarray-based assay
    • Volokhov D., Rasooly A., Chumakov K., and Chizhikov V. Identification of Listeria species by microarray-based assay. Clin. Microbiol. 40 (2002) 4720-4728
    • (2002) Clin. Microbiol. , vol.40 , pp. 4720-4728
    • Volokhov, D.1    Rasooly, A.2    Chumakov, K.3    Chizhikov, V.4
  • 210
    • 0034008029 scopus 로고    scopus 로고
    • Single-strand conformation polymorphisms in the hly gene and polymerase chain reaction analysis of a Repeat Region in the iap gene to identify and Type Listeria monocytogenes
    • Wagner M., Lehner A., Klein D., and Bubert A. Single-strand conformation polymorphisms in the hly gene and polymerase chain reaction analysis of a Repeat Region in the iap gene to identify and Type Listeria monocytogenes. J. Food Prot. 63 (2000) 332-336
    • (2000) J. Food Prot. , vol.63 , pp. 332-336
    • Wagner, M.1    Lehner, A.2    Klein, D.3    Bubert, A.4
  • 211
    • 0027339723 scopus 로고
    • Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identifications of microorganisms
    • Wallner G., Amann R., and Beisker W. Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identifications of microorganisms. Cytometry 14 (1993) 136-143
    • (1993) Cytometry , vol.14 , pp. 136-143
    • Wallner, G.1    Amann, R.2    Beisker, W.3
  • 212
    • 0030757987 scopus 로고    scopus 로고
    • Use of predictive microbiology in microbial food safety risk assessment
    • Walls I., and Scott V.N. Use of predictive microbiology in microbial food safety risk assessment. Int. J. Food Microbiol. 36 (1997) 97-102
    • (1997) Int. J. Food Microbiol. , vol.36 , pp. 97-102
    • Walls, I.1    Scott, V.N.2
  • 213
    • 0030844080 scopus 로고    scopus 로고
    • Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes
    • Wang G.C.-Y., and Wang Y. Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes. Appl. Environ. Microbiol. 63 (1997) 4645-4650
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4645-4650
    • Wang, G.C.-Y.1    Wang, Y.2
  • 214
    • 34548173505 scopus 로고    scopus 로고
    • Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA-DNA hybridization in the Bacillus subtilis group
    • Wang L.T., Lee F.L., Tai C.J., and Kasai H. Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA-DNA hybridization in the Bacillus subtilis group. Int. J. Syst. Evol. Microbiol. 57 (2007) 1846-1850
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 1846-1850
    • Wang, L.T.1    Lee, F.L.2    Tai, C.J.3    Kasai, H.4
  • 215
    • 0035795219 scopus 로고    scopus 로고
    • Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting
    • Wantabe K., Kodama Y., and Harayama S. Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting. J. Microbiol. Methods 44 (2001) 253-262
    • (2001) J. Microbiol. Methods , vol.44 , pp. 253-262
    • Wantabe, K.1    Kodama, Y.2    Harayama, S.3
  • 216
    • 46949097774 scopus 로고    scopus 로고
    • Willems, K.A., Willems, M.L., Dardenne, F., Klingeberg, M., Michelberger, T. and Witte, G., 2003. Microbiological observations during storage of thick juice on a pilot and industrial scale. In: Proceedings CITS 2003, 22th General Assembly Madrid, Spain, May 18-21/2003.
    • Willems, K.A., Willems, M.L., Dardenne, F., Klingeberg, M., Michelberger, T. and Witte, G., 2003. Microbiological observations during storage of thick juice on a pilot and industrial scale. In: Proceedings CITS 2003, 22th General Assembly Madrid, Spain, May 18-21/2003.
  • 217
    • 41049108077 scopus 로고    scopus 로고
    • The diversity of bacterial communities associated with Atlantic cod Gadus morhua
    • 10.1007/s00248-007-9288-0
    • Wilson B., Danilowicz B.S., and Meijer W.G. The diversity of bacterial communities associated with Atlantic cod Gadus morhua. Microb. Ecol. (2008) 10.1007/s00248-007-9288-0
    • (2008) Microb. Ecol.
    • Wilson, B.1    Danilowicz, B.S.2    Meijer, W.G.3
  • 218
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63 (1997) 3741-3751
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 220
    • 0032703075 scopus 로고    scopus 로고
    • Methanotroph diversity in landfill soil: isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis
    • Wise M.G., McArthur J.V., and Shimkets L.J. Methanotroph diversity in landfill soil: isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis. Appl. Environ. Microbiol. 65 (1999) 4887-4897
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4887-4897
    • Wise, M.G.1    McArthur, J.V.2    Shimkets, L.J.3
  • 221
    • 33646573004 scopus 로고    scopus 로고
    • Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases
    • Witzig R., Junca H., Hecht H.-J., and Pieper D.H. Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases. Appl. Environ. Microbiol. 72 (2006) 3504-3514
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 3504-3514
    • Witzig, R.1    Junca, H.2    Hecht, H.-J.3    Pieper, D.H.4
  • 222
    • 2142761510 scopus 로고    scopus 로고
    • Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments
    • Wolsing M., and Priemé M. Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments. FEMS Microbiol. Ecol. 48 (2004) 261-271
    • (2004) FEMS Microbiol. Ecol. , vol.48 , pp. 261-271
    • Wolsing, M.1    Priemé, M.2
  • 223
    • 0035656126 scopus 로고    scopus 로고
    • Development and evaluation of functional gene arrays for detection of selected genes in the environment
    • Wu L., Thompson D.K., Li G., Hurt R.A., Tiedje J.M., and Zhou J. Development and evaluation of functional gene arrays for detection of selected genes in the environment. Appl. Environ. Microbiol. 67 (2001) 5780-5790
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5780-5790
    • Wu, L.1    Thompson, D.K.2    Li, G.3    Hurt, R.A.4    Tiedje, J.M.5    Zhou, J.6
  • 224
    • 0141815879 scopus 로고    scopus 로고
    • Use of DNA and peptide nucleic acid molecular beacons for detection and quantification of rRNA in solution and in whole cells
    • Xi C.W., Balberg M., Boppart S.A., and Raskin L. Use of DNA and peptide nucleic acid molecular beacons for detection and quantification of rRNA in solution and in whole cells. Appl. Environ. Microbiol. 69 (2003) 5673-5678
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 5673-5678
    • Xi, C.W.1    Balberg, M.2    Boppart, S.A.3    Raskin, L.4
  • 225
    • 34548076977 scopus 로고    scopus 로고
    • Assessing the conservation of mammalian gene expression using high-density exon arrays
    • Xing Y., Ouyang Z., Kapur K., Scott M.P., and Wong W.H. Assessing the conservation of mammalian gene expression using high-density exon arrays. Mol. Biol. Evol. 24 (2007) 1283-1285
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1283-1285
    • Xing, Y.1    Ouyang, Z.2    Kapur, K.3    Scott, M.P.4    Wong, W.H.5
  • 226
    • 22144460213 scopus 로고    scopus 로고
    • Quantitative detection of Legionella pneumophila in water samples by immunomagnetic purification and real-time PCR amplification of the dotA gene
    • Yáñez M.A., Carrasco-Serrano C., Barberá V.M., and Catalán V. Quantitative detection of Legionella pneumophila in water samples by immunomagnetic purification and real-time PCR amplification of the dotA gene. Appl. Environ. Microbiol. 71 (2005) 3433-3441
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3433-3441
    • Yáñez, M.A.1    Carrasco-Serrano, C.2    Barberá, V.M.3    Catalán, V.4
  • 227
    • 0035957371 scopus 로고    scopus 로고
    • Microbial phyllosphere populations are more complex than previously realized
    • Yang C.-H., Crowley D.E., Borneman J., and Keen N.T. Microbial phyllosphere populations are more complex than previously realized. Proc. Natl. Acad. Sci. USA 98 (2001) 3889-3894
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 3889-3894
    • Yang, C.-H.1    Crowley, D.E.2    Borneman, J.3    Keen, N.T.4
  • 230
    • 0035653253 scopus 로고    scopus 로고
    • Prevalence of Campylobacter spp., Escherichia coli, and Salmonella Serovars in retail chicken, turkey, pork, and beef from the greater Washington, DC, area
    • Zhao C., Ge B., De Villena J., Sudler R., Yeh E., Zhao S., White D.G., Wagner D., and Meng J. Prevalence of Campylobacter spp., Escherichia coli, and Salmonella Serovars in retail chicken, turkey, pork, and beef from the greater Washington, DC, area. Appl. Environ. Microbiol. 67 (2001) 5431-5436
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5431-5436
    • Zhao, C.1    Ge, B.2    De Villena, J.3    Sudler, R.4    Yeh, E.5    Zhao, S.6    White, D.G.7    Wagner, D.8    Meng, J.9
  • 231
    • 0034547651 scopus 로고    scopus 로고
    • Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis
    • Zumstein E., Moletta R., and Godon J.J. Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis. Environ. Microbiol. 2 (2000) 69-78
    • (2000) Environ. Microbiol. , vol.2 , pp. 69-78
    • Zumstein, E.1    Moletta, R.2    Godon, J.J.3


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