-
3
-
-
47249110199
-
The fold of alpha-synuclein fibrils
-
Vilar M., Chou H.T., Lührs T.S.K., Maji D., Riek-Loher R., and Verel G. The fold of alpha-synuclein fibrils Proc. Natl Acad. Sci. USA 105 2008 8637 8642
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 8637-8642
-
-
Vilar, M.1
Chou, H.T.2
Lührs, T.S.K.3
Maji, D.4
Riek-Loher, R.5
Verel, G.6
-
4
-
-
77957782470
-
Biology of amyloid: Structure, function, and regulation
-
Greenwald J., and Riek R. Biology of amyloid: structure, function, and regulation Structure 18 2010 1244
-
(2010)
Structure
, vol.18
, pp. 1244
-
-
Greenwald, J.1
Riek, R.2
-
5
-
-
33645240208
-
A systematic screen of beta2 -microglobulin and insulin for amyloid-like segments
-
Ivanova M.I., Thompson M.J., and Eisenberg D. A systematic screen of beta2 -microglobulin and insulin for amyloid-like segments Proc. Natl Acad. Sci. USA 103 2006 4079 4082
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 4079-4082
-
-
Ivanova, M.I.1
Thompson, M.J.2
Eisenberg, D.3
-
6
-
-
20444440728
-
Structure of the cross-beta spine of amyloid-like fibrils
-
Nelson R., Sawaya M.R., Balbirnie M., Madsen A.O., Riekel C., Grothe R., and Eisenberg D. Structure of the cross-beta spine of amyloid-like fibrils Nature 435 2005 773 778
-
(2005)
Nature
, vol.435
, pp. 773-778
-
-
Nelson, R.1
Sawaya, M.R.2
Balbirnie, M.3
Madsen, A.O.4
Riekel, C.5
Grothe, R.6
Eisenberg, D.7
-
7
-
-
0036407227
-
Peptide aggregation in neurodegenerative disease
-
Murphy R.M. Peptide aggregation in neurodegenerative disease Annu. Rev. Biomed. Eng. 4 2002 155 174
-
(2002)
Annu. Rev. Biomed. Eng.
, vol.4
, pp. 155-174
-
-
Murphy, R.M.1
-
8
-
-
37349043948
-
Amyloid toxicity is independent of polypeptide sequence, length and chirality
-
Pastor M.T., Kümmerer N., Schubert V., Esteras-Chopo A., Dotti C.G., de la Paz M., and Serrano L. Amyloid toxicity is independent of polypeptide sequence, length and chirality J. Mol. Biol. 375 2008 695 707
-
(2008)
J. Mol. Biol.
, vol.375
, pp. 695-707
-
-
Pastor, M.T.1
Kümmerer, N.2
Schubert, V.3
Esteras-Chopo, A.4
Dotti, C.G.5
De La Paz, M.6
Serrano, L.7
-
9
-
-
0036845354
-
The behaviour of polyamino acids reveals an inverse side chain effect in amyloid structure formation
-
Fändrich M., and Dobson C.M. The behaviour of polyamino acids reveals an inverse side chain effect in amyloid structure formation EMBO J. 21 2002 5682 5690
-
(2002)
EMBO J.
, vol.21
, pp. 5682-5690
-
-
Fändrich, M.1
Dobson, C.M.2
-
10
-
-
66849143696
-
Converging concepts of protein folding in vitro and in vivo
-
Hartl F.U., and Hayer-Hartl M. Converging concepts of protein folding in vitro and in vivo Nat. Struct. Mol. Biol. 16 2009 574 581
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 574-581
-
-
Hartl, F.U.1
Hayer-Hartl, M.2
-
11
-
-
44949219079
-
Prediction of aggregation-prone regions in structured proteins
-
Gian Gaetano Tartaglia A.P.P., Campioni S., Dobson C.M., Chiti F., and Vendruscolo M. Prediction of aggregation-prone regions in structured proteins J. Mol. Biol. 380 2008 425 436
-
(2008)
J. Mol. Biol.
, vol.380
, pp. 425-436
-
-
Gian Gaetano Tartaglia, A.P.P.1
Campioni, S.2
Dobson, C.M.3
Chiti, F.4
Vendruscolo, M.5
-
12
-
-
70349263251
-
The role of prefibrillar structures in the assembly of a peptide amyloid
-
Ruschak A., and Miranker A. The role of prefibrillar structures in the assembly of a peptide amyloid J. Mol. Biol. 393 2009 214 226
-
(2009)
J. Mol. Biol.
, vol.393
, pp. 214-226
-
-
Ruschak, A.1
Miranker, A.2
-
13
-
-
33645995764
-
Recent atomic models of amyloid fibril structure
-
Nelson R., and Eisenberg D. Recent atomic models of amyloid fibril structure Curr. Opin. Struct. Biol. 16 2006 260 265
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 260-265
-
-
Nelson, R.1
Eisenberg, D.2
-
14
-
-
0031825554
-
From the globular to the fibrous state: Protein structure and structural conversion in amyloid formation
-
Sunde M., and Blake C. From the globular to the fibrous state: protein structure and structural conversion in amyloid formation Q. Rev. Biophys. 31 1998 1 39
-
(1998)
Q. Rev. Biophys.
, vol.31
, pp. 1-39
-
-
Sunde, M.1
Blake, C.2
-
15
-
-
34249290108
-
Atomic structures of amyloid cross-beta spines reveal varied steric zippers
-
Sawaya M.R., Sambashivan S., Nelson R., Ivanova M.I., Sievers S.A., and Apostol M.I. Atomic structures of amyloid cross-beta spines reveal varied steric zippers Nature 447 2007 453 457
-
(2007)
Nature
, vol.447
, pp. 453-457
-
-
Sawaya, M.R.1
Sambashivan, S.2
Nelson, R.3
Ivanova, M.I.4
Sievers, S.A.5
Apostol, M.I.6
-
16
-
-
69949187643
-
Molecular mechanisms for protein-encoded inheritance
-
Wiltzius J.J.W., Landau M., Nelson R., Sawaya M.R., Apostol M.I., and Goldschmidt L. Molecular mechanisms for protein-encoded inheritance Nat. Struct. Mol. Biol. 16 2009 973 978
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 973-978
-
-
Wiltzius, J.J.W.1
Landau, M.2
Nelson, R.3
Sawaya, M.R.4
Apostol, M.I.5
Goldschmidt, L.6
-
17
-
-
78149340576
-
Structural characterization of gnnqqny amyloid fibrils by magic angle spinning NMR
-
van der Wel P.C., Lewandowski J.R., and Griffin R.G. Structural characterization of gnnqqny amyloid fibrils by magic angle spinning NMR Biochemistry 49 2010 9457 9469
-
(2010)
Biochemistry
, vol.49
, pp. 9457-9469
-
-
Van Der Wel, P.C.1
Lewandowski, J.R.2
Griffin, R.G.3
-
18
-
-
77952398268
-
Fibres, crystals and polymorphism: The structural promiscuity of amyloidogenic peptides
-
Marshall K., and Serpell L. Fibres, crystals and polymorphism: the structural promiscuity of amyloidogenic peptides. Soft Matter 6 2010 2110 2114
-
(2010)
Soft Matter
, vol.6
, pp. 2110-2114
-
-
Marshall, K.1
Serpell, L.2
-
19
-
-
2342569618
-
Conformational constraints for amyloid fibrillation: The importance of being unfolded
-
Uversky V.N., and Fink A.L. Conformational constraints for amyloid fibrillation: the importance of being unfolded Biochim. Biophys. 1698 2004 131 153
-
(2004)
Biochim. Biophys.
, vol.1698
, pp. 131-153
-
-
Uversky, V.N.1
Fink, A.L.2
-
20
-
-
0347357617
-
Protein folding and misfolding
-
Dobson C.M. Protein folding and misfolding Nature 426 2003 884 890
-
(2003)
Nature
, vol.426
, pp. 884-890
-
-
Dobson, C.M.1
-
21
-
-
0037154249
-
Combinatorial approaches: A new tool to search for highly structured beta-hairpin peptides
-
Pastor M.T., de la Paz M.L., Lacroix E., Serrano L., and Perez-Paya E. Combinatorial approaches: a new tool to search for highly structured beta-hairpin peptides Proc. Natl Acad. Sci. USA 99 2002 614 619
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 614-619
-
-
Pastor, M.T.1
De La Paz, M.L.2
Lacroix, E.3
Serrano, L.4
Perez-Paya, E.5
-
22
-
-
77649240855
-
Identifying the amylome, proteins capable of forming amyloid-like fibrils
-
Goldschmidt L., Teng P.K., Riek R., and Eisenberg D. Identifying the amylome, proteins capable of forming amyloid-like fibrils Proc. Natl Acad. Sci. USA 107 2010 3487 3492
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 3487-3492
-
-
Goldschmidt, L.1
Teng, P.K.2
Riek, R.3
Eisenberg, D.4
-
23
-
-
2442553006
-
Short amino acid stretches can mediate amyloid formation in globular proteins: The src homology 3 (sh3) case
-
Ventura S., Zurdo J., Narayanan S., Parreno M., Mangues R., and Reif B. Short amino acid stretches can mediate amyloid formation in globular proteins: the src homology 3 (sh3) case Proc. Natl Acad. Sci. USA 101 2004 7258 7263
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 7258-7263
-
-
Ventura, S.1
Zurdo, J.2
Narayanan, S.3
Parreno, M.4
Mangues, R.5
Reif, B.6
-
24
-
-
0034625060
-
Assembly of tau protein into Alzheimer paired helical filaments depends on a local sequence motif (306vqivyk311) forming beta structure
-
von Bergen M., Friedhoff P., Biernat J., Heberle J., Mandelkow E.M., and Mandelkow E. Assembly of tau protein into Alzheimer paired helical filaments depends on a local sequence motif (306vqivyk311) forming beta structure Proc. Natl Acad. Sci. USA 97 2000 5129 5134
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 5129-5134
-
-
Von Bergen, M.1
Friedhoff, P.2
Biernat, J.3
Heberle, J.4
Mandelkow, E.M.5
Mandelkow, E.6
-
25
-
-
9044229145
-
On the nucleation and growth of amyloid beta-protein fibrils: Detection of nuclei and quantitation of rate constants
-
Lomakin A., Chung D.S., Benedek G.B., Kirschner D.A., and Teplow D.B. On the nucleation and growth of amyloid beta-protein fibrils: detection of nuclei and quantitation of rate constants Proc. Natl Acad. Sci. USA 93 1996 1125 1129
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 1125-1129
-
-
Lomakin, A.1
Chung, D.S.2
Benedek, G.B.3
Kirschner, D.A.4
Teplow, D.B.5
-
26
-
-
0034714351
-
Nucleated conformational conversion and the replication of conformational information by a prion determinant
-
Serio T.R., Cashikar A.G., Kowal A.S., Sawicki G.J., Moslehi J.J., and Serpell L. Nucleated conformational conversion and the replication of conformational information by a prion determinant Science 289 2000 1317 1321
-
(2000)
Science
, vol.289
, pp. 1317-1321
-
-
Serio, T.R.1
Cashikar, A.G.2
Kowal, A.S.3
Sawicki, G.J.4
Moslehi, J.J.5
Serpell, L.6
-
27
-
-
78751685655
-
Why do amyloid molecules assemble into oligomers and fibrils?
-
Schmit J.D., Ghosh K., and Dill K. Why do amyloid molecules assemble into oligomers and fibrils? Biophys. J. 100 2011 450 458
-
(2011)
Biophys. J.
, vol.100
, pp. 450-458
-
-
Schmit, J.D.1
Ghosh, K.2
Dill, K.3
-
28
-
-
70450224432
-
Role of small oligomers on the amylodogenic aggregation free-energy landscape
-
He X., Giurleo J., and Talaga D. Role of small oligomers on the amylodogenic aggregation free-energy landscape J. Mol. Biol. 395 2010 134 154
-
(2010)
J. Mol. Biol.
, vol.395
, pp. 134-154
-
-
He, X.1
Giurleo, J.2
Talaga, D.3
-
29
-
-
79957999075
-
A multistage pathway for human prion protein aggregation in vitro: From multimeric seeds to beta-oligomers and nonfibrillar structures
-
Cho K., Huang Y., Yu S., Yin S., Plomp M., and Qiu S. A multistage pathway for human prion protein aggregation in vitro: from multimeric seeds to beta-oligomers and nonfibrillar structures J. Am. Chem. Soc. 133 2011 8586 8593
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 8586-8593
-
-
Cho, K.1
Huang, Y.2
Yu, S.3
Yin, S.4
Plomp, M.5
Qiu, S.6
-
30
-
-
67849106670
-
Amyloid-beta protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease
-
Bernstein S.L., Dupuis N.F., Lazo N.D., Wyttenbach T., Condron M.M., and Bitan G. Amyloid-beta protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease Nat. Chem. 1 2009 326 331
-
(2009)
Nat. Chem.
, vol.1
, pp. 326-331
-
-
Bernstein, S.L.1
Dupuis, N.F.2
Lazo, N.D.3
Wyttenbach, T.4
Condron, M.M.5
Bitan, G.6
-
31
-
-
30044446633
-
Early events in the fibrillation of monomeric insulin
-
Ahmad A., Uversky V.N., Hong D., and Fink A.L. Early events in the fibrillation of monomeric insulin J. Biol. Chem. 280 2005 42669 42675
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 42669-42675
-
-
Ahmad, A.1
Uversky, V.N.2
Hong, D.3
Fink, A.L.4
-
32
-
-
61349113318
-
Characterization of oligomeric species on the aggregation pathway of human lysozyme
-
Frare E., Mossuto M.F., de Laureto P.P., Tolin S., Menzer L., and Dumoulin M. Characterization of oligomeric species on the aggregation pathway of human lysozyme J. Mol. Biol. 387 2009 17 27
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 17-27
-
-
Frare, E.1
Mossuto, M.F.2
De Laureto, P.P.3
Tolin, S.4
Menzer, L.5
Dumoulin, M.6
-
33
-
-
57649148788
-
Structural classification of toxic amyloid oligomers
-
Glabe C.G. Structural classification of toxic amyloid oligomers J. Biol. Chem. 283 2008 29639 29643
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 29639-29643
-
-
Glabe, C.G.1
-
34
-
-
25444433798
-
Characterization of oligomeric intermediates in alpha-synuclein fibrillation: FRET studies of y125w/y133f/y136f alpha-synuclein
-
Kaylor J., Bodner N., Edridge S., Yamin G., Hong D., and Fink A. Characterization of oligomeric intermediates in alpha-synuclein fibrillation: FRET studies of y125w/y133f/y136f alpha-synuclein J. Mol. Biol. 353 2005 357 372
-
(2005)
J. Mol. Biol.
, vol.353
, pp. 357-372
-
-
Kaylor, J.1
Bodner, N.2
Edridge, S.3
Yamin, G.4
Hong, D.5
Fink, A.6
-
35
-
-
33846160381
-
Polymorphism in the intermediates and products of amyloid assembly
-
Kodali R., and Wetzel R. Polymorphism in the intermediates and products of amyloid assembly Curr. Opin. Struct. Biol. 17 2007 48 57
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 48-57
-
-
Kodali, R.1
Wetzel, R.2
-
36
-
-
0037041420
-
Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases
-
Bucciantini M., Giannoni E., Chiti F., Baroni F., Formigli L., and Zurdo J. Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases Nature 416 2002 507 511
-
(2002)
Nature
, vol.416
, pp. 507-511
-
-
Bucciantini, M.1
Giannoni, E.2
Chiti, F.3
Baroni, F.4
Formigli, L.5
Zurdo, J.6
-
37
-
-
79959351077
-
Amyloid-beta annular protofibrils evade fibrillar fate in Alzheimer disease brain
-
Lasagna-Reeves C., Glabe C., and Kayed R. Amyloid-beta annular protofibrils evade fibrillar fate in Alzheimer disease brain J. Biol. Chem. 286 2011 22122 22130
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 22122-22130
-
-
Lasagna-Reeves, C.1
Glabe, C.2
Kayed, R.3
-
38
-
-
77951081386
-
Elongated oligomers in beta 2-microglobulin amyloid assembly revealed by ion mobility spectrometry mass spectrometry
-
Smith D., Radford S., and Ashcroft A. Elongated oligomers in beta 2-microglobulin amyloid assembly revealed by ion mobility spectrometry mass spectrometry Proc. Natl Acad. Sci. USA 107 2010 6794 6798
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 6794-6798
-
-
Smith, D.1
Radford, S.2
Ashcroft, A.3
-
39
-
-
77953067946
-
Direct observation of nucleation and growth in amyloid self-assembly
-
Liang Y., Lynn D.G., and Berland K.M. Direct observation of nucleation and growth in amyloid self-assembly J. Am. Chem. Soc. 132 2010 6306 6308
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 6306-6308
-
-
Liang, Y.1
Lynn, D.G.2
Berland, K.M.3
-
40
-
-
77953086457
-
Structural properties and dynamic behavior of nonfibrillar oligomers formed by prp(106-126)
-
Walsh P., Neudecker P., and Sharpe S. Structural properties and dynamic behavior of nonfibrillar oligomers formed by prp(106-126) J. Am. Chem. Soc. 132 2010 7684 7695
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 7684-7695
-
-
Walsh, P.1
Neudecker, P.2
Sharpe, S.3
-
41
-
-
74949142621
-
Oligomers of the prion protein fragment 106-126 are likely assembled from beta-hairpins in solution, and methionine oxidation inhibits assembly without altering the peptides monomeric conformation
-
Grabenauer M., Wu C., Soto P., Shea J.E., and Bowers M.T. Oligomers of the prion protein fragment 106-126 are likely assembled from beta-hairpins in solution, and methionine oxidation inhibits assembly without altering the peptides monomeric conformation J. Am. Chem. Soc. 132 2010 532 539
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 532-539
-
-
Grabenauer, M.1
Wu, C.2
Soto, P.3
Shea, J.E.4
Bowers, M.T.5
-
42
-
-
19544375553
-
Sequence dependence of amyloid fibril formation: Insights from molecular dynamics simulations
-
Lopez de la Paz M., de Mori G., Serrano L., and Colombo G. Sequence dependence of amyloid fibril formation: insights from molecular dynamics simulations J. Mol. Biol. 349 2005 583 596
-
(2005)
J. Mol. Biol.
, vol.349
, pp. 583-596
-
-
Lopez De La Paz, M.1
De Mori, G.2
Serrano, L.3
Colombo, G.4
-
43
-
-
33746377894
-
Protein misfolding, functional amyloid, and human disease
-
Chiti F., and Dobson C.M. Protein misfolding, functional amyloid, and human disease Annu. Rev. Biochem. 75 2006 333 366
-
(2006)
Annu. Rev. Biochem.
, vol.75
, pp. 333-366
-
-
Chiti, F.1
Dobson, C.M.2
-
44
-
-
77951975748
-
Structural conversion of neurotoxic amyloid-beta 1-42 oligomers to fibrils
-
Ahmed M., Davis J., A.D., T. Sato, S. Ahuja, S. Aimoto, and J. Elliott Structural conversion of neurotoxic amyloid-beta 1-42 oligomers to fibrils Nat. Struct. Mol. Biol. 17 2010 561 567
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 561-567
-
-
Ahmed, M.1
Davis, J.2
D, A.3
Sato, T.4
Ahuja, S.5
Aimoto, S.6
Elliott, J.7
-
45
-
-
77957257176
-
Härd, Stabilization of neurotoxic Alzheimer amyloid-beta oligomers by protein engineering
-
Sandberg A., Luheshi L., Sö S., llvander T., Pereira de Barros B., and Macao T. Härd, Stabilization of neurotoxic Alzheimer amyloid-beta oligomers by protein engineering Proc. Natl Acad. Sci. USA 107 2010 15595 15600
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 15595-15600
-
-
Sandberg, A.1
Luheshi, L.2
Sö, S.3
Llvander, T.4
Pereira De Barros, B.5
MacAo, T.6
-
46
-
-
36849084640
-
Evidence of fibril-like bold beta-sheet structures in a neurotoxic amyloid intermediate of Alzheimer's bold beta-amyloid
-
Chimon S., Shaibat M., Jones C., Calero D., Aizezi B., and Ishii Y. Evidence of fibril-like bold beta-sheet structures in a neurotoxic amyloid intermediate of Alzheimer's bold beta-amyloid Nat. Struct. Mol. Biol. 14 2007 1157 1164
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1157-1164
-
-
Chimon, S.1
Shaibat, M.2
Jones, C.3
Calero, D.4
Aizezi, B.5
Ishii, Y.6
-
47
-
-
33750365052
-
Are amyloid diseases caused by protein aggregates that mimic bacterial pore-forming toxins?
-
Lashuel H., and Lansbury P.T. Are amyloid diseases caused by protein aggregates that mimic bacterial pore-forming toxins? Q. Rev. Biophys. 39 2006 167 201
-
(2006)
Q. Rev. Biophys.
, vol.39
, pp. 167-201
-
-
Lashuel, H.1
Lansbury, P.T.2
-
48
-
-
37549055108
-
Thermodynamics and kinetics of aggregation for the gnnqqny peptide
-
Strodel B., Whittleston C., and Wales D. Thermodynamics and kinetics of aggregation for the gnnqqny peptide J. Am. Chem. Soc. 129 2007 16005 16014
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 16005-16014
-
-
Strodel, B.1
Whittleston, C.2
Wales, D.3
-
49
-
-
33846036362
-
Monomer adds to preformed structured oligomers of abeta-peptides by a two-stage dock-lock mechanism
-
Nguyen P.H., Li M.S., Stock G., Straub J.E., and Thirumalai D. Monomer adds to preformed structured oligomers of abeta-peptides by a two-stage dock-lock mechanism Proc. Natl Acad. Sci. USA 104 2007 111 116
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 111-116
-
-
Nguyen, P.H.1
Li, M.S.2
Stock, G.3
Straub, J.E.4
Thirumalai, D.5
-
50
-
-
79955770935
-
Mapping the conformational dynamics and pathways of spontaneous steric zipper peptide oligomerization
-
Matthes D., Gapsys V., Daebel V., and de Groot B.L. Mapping the conformational dynamics and pathways of spontaneous steric zipper peptide oligomerization PLoS ONE 6 2011 e19129
-
(2011)
PLoS ONE
, vol.6
, pp. 19129
-
-
Matthes, D.1
Gapsys, V.2
Daebel, V.3
De Groot, B.L.4
-
51
-
-
0037337271
-
Dissecting the assembly of abeta16-22 amyloid peptides into antiparallel beta sheets
-
Klimov D.K., and Thirumalai D. Dissecting the assembly of abeta16-22 amyloid peptides into antiparallel beta sheets Structure 11 2003 295 307
-
(2003)
Structure
, vol.11
, pp. 295-307
-
-
Klimov, D.K.1
Thirumalai, D.2
-
52
-
-
16344367783
-
Formation of partially ordered oligomers of amyloidogenic hexapeptide (nfgail) in aqueous solution observed in molecular dynamics simulations
-
Wu C., Lei H., and Duan Y. Formation of partially ordered oligomers of amyloidogenic hexapeptide (nfgail) in aqueous solution observed in molecular dynamics simulations Biophys. J. 87 2004 3000 3009
-
(2004)
Biophys. J.
, vol.87
, pp. 3000-3009
-
-
Wu, C.1
Lei, H.2
Duan, Y.3
-
53
-
-
10844230140
-
Replica exchange molecular dynamics simulations of amyloid peptide aggregation
-
Cecchini M., Rao F., Seeber M., and Caflisch A. Replica exchange molecular dynamics simulations of amyloid peptide aggregation J. Chem. Phys. 2004 10748 10756
-
(2004)
J. Chem. Phys.
, pp. 10748-10756
-
-
Cecchini, M.1
Rao, F.2
Seeber, M.3
Caflisch, A.4
-
54
-
-
77951271571
-
Principles governing oligomer formation in amyloidogenic peptides
-
Straub J.E., and Thirumalai D. Principles governing oligomer formation in amyloidogenic peptides Curr. Opin. Struct. Biol. 20 2010 1 9
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 1-9
-
-
Straub, J.E.1
Thirumalai, D.2
-
55
-
-
66149189211
-
Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent
-
Lu Y., Derreumaux P., Guo Z., Mousseau N., and Wei G. Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent Proteins: Struct., Funct., Bioinformatics 75 2009 954 963
-
(2009)
Proteins: Struct., Funct., Bioinformatics
, vol.75
, pp. 954-963
-
-
Lu, Y.1
Derreumaux, P.2
Guo, Z.3
Mousseau, N.4
Wei, G.5
-
56
-
-
77953903100
-
Probing the strand orientation and registry alignment in the propagation of amyloid fibrils
-
Wallace J., and Shen J. Probing the strand orientation and registry alignment in the propagation of amyloid fibrils Biochemistry 49 2010 5290 5298
-
(2010)
Biochemistry
, vol.49
, pp. 5290-5298
-
-
Wallace, J.1
Shen, J.2
-
57
-
-
67749110404
-
Dynamics of locking of peptides onto growing amyloid fibrils
-
Reddy G., Straub J.E., and Thirumalai D. Dynamics of locking of peptides onto growing amyloid fibrils Proc. Natl Acad. Sci. USA 106 2009 11948 11953
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 11948-11953
-
-
Reddy, G.1
Straub, J.E.2
Thirumalai, D.3
-
58
-
-
33645513980
-
Theoretical approaches to protein aggregation
-
Gsponer J., and Vendruscolo M. Theoretical approaches to protein aggregation Protein Pept. Lett. 13 2006 287 293
-
(2006)
Protein Pept. Lett.
, vol.13
, pp. 287-293
-
-
Gsponer, J.1
Vendruscolo, M.2
-
59
-
-
79958122197
-
A multiscale approach to characterize the early aggregation steps of the amyloid-forming peptide gnnqqny from the yeast prion sup-35
-
Nasica-Labouze J., Meli M., Derreumaux P., Colombo G., and Mousseau N. A multiscale approach to characterize the early aggregation steps of the amyloid-forming peptide gnnqqny from the yeast prion sup-35 PLoS Comput. Biol. 7 2011 e1002051
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. 1002051
-
-
Nasica-Labouze, J.1
Meli, M.2
Derreumaux, P.3
Colombo, G.4
Mousseau, N.5
-
60
-
-
3142568651
-
Pathway complexity of Alzheimers beta-amyloid abeta16-22 peptide assembly
-
Santini S., Wei G., Mousseau N., and Derreumaux P. Pathway complexity of Alzheimers beta-amyloid abeta16-22 peptide assembly Structure 12 2004 1245 1255
-
(2004)
Structure
, vol.12
, pp. 1245-1255
-
-
Santini, S.1
Wei, G.2
Mousseau, N.3
Derreumaux, P.4
-
61
-
-
26444514550
-
Intersheet rearrangement of polypeptides during nucleation of beta-sheet aggregates
-
Petty S.A., and Decatur S.M. Intersheet rearrangement of polypeptides during nucleation of beta-sheet aggregates Proc. Natl Acad. Sci. USA 102 2005 14272 14277
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 14272-14277
-
-
Petty, S.A.1
Decatur, S.M.2
-
62
-
-
4444346811
-
Kinetic control of dimer structure formation in amyloid fibrillogenesis
-
Hwang W., Zhang S., Kamm R.D., and Karplus M. Kinetic control of dimer structure formation in amyloid fibrillogenesis Proc. Natl Acad. Sci. USA 101 2004 12916 12921
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 12916-12921
-
-
Hwang, W.1
Zhang, S.2
Kamm, R.D.3
Karplus, M.4
-
64
-
-
6944241424
-
Aqueous urea solution destabilizes abeta16-22 oligomers
-
Klimov D., Straub J., and Thirumalai D. Aqueous urea solution destabilizes abeta16-22 oligomers Proc. Natl Acad. Sci. USA 101 2004 14760 14765
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 14760-14765
-
-
Klimov, D.1
Straub, J.2
Thirumalai, D.3
-
65
-
-
78650750083
-
Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires
-
Reddy G., Straub J., and Thirumalai D. Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires Proc. Natl Acad. Sci. USA 107 2010 21459 21464
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 21459-21464
-
-
Reddy, G.1
Straub, J.2
Thirumalai, D.3
-
66
-
-
73149108618
-
Molecular basis for insulin fibril assembly
-
Ivanova M.I., Sievers S.A., Sawaya M.R., Wall J.S., and Eisenberg D. Molecular basis for insulin fibril assembly Proc. Natl Acad. Sci. USA 106 2009 18990 18995
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 18990-18995
-
-
Ivanova, M.I.1
Sievers, S.A.2
Sawaya, M.R.3
Wall, J.S.4
Eisenberg, D.5
-
67
-
-
70349218068
-
Short protein segments can drive a non-fibrillizing protein into the amyloid state
-
Teng P.K., and Eisenberg D. Short protein segments can drive a non-fibrillizing protein into the amyloid state Protein Eng. Des. Sel. 22 2009 531 536
-
(2009)
Protein Eng. Des. Sel.
, vol.22
, pp. 531-536
-
-
Teng, P.K.1
Eisenberg, D.2
-
68
-
-
33645669165
-
Prediction of nucleating sequences from amyloidogenic propensities of tau-related peptides
-
Quijano F., Morrow D., Wise B., Brancia F., and Goux W. Prediction of nucleating sequences from amyloidogenic propensities of tau-related peptides Biochemistry 45 2006 4638 4652
-
(2006)
Biochemistry
, vol.45
, pp. 4638-4652
-
-
Quijano, F.1
Morrow, D.2
Wise, B.3
Brancia, F.4
Goux, W.5
-
69
-
-
55949083717
-
Charge-pairing mechanism of phosphorylation effect upon amyloid fibrillation of human tau core peptide
-
Inoue M., Hirata A., Tainaka K., Morii T., and Konno T. Charge-pairing mechanism of phosphorylation effect upon amyloid fibrillation of human tau core peptide Biochemistry 47 2008 11847 11857
-
(2008)
Biochemistry
, vol.47
, pp. 11847-11857
-
-
Inoue, M.1
Hirata, A.2
Tainaka, K.3
Morii, T.4
Konno, T.5
-
70
-
-
0022596727
-
Solvation energy in protein folding and binding
-
Eisenberg D., and McLachlan A.D. Solvation energy in protein folding and binding Nature 319 1986 199 203
-
(1986)
Nature
, vol.319
, pp. 199-203
-
-
Eisenberg, D.1
McLachlan, A.D.2
-
71
-
-
70049114950
-
Detection of functional modes in protein dynamics
-
Hub J., and de Groot B. Detection of functional modes in protein dynamics PLoS Comput. Biol. 5 2009 e1000480
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1000480
-
-
Hub, J.1
De Groot, B.2
-
74
-
-
77449099723
-
Application of nonlinear dimentionality reduction to characterize the conformational landscape of small peptides
-
H. Stamati, C. Clementi, and L. Kavraki Application of nonlinear dimentionality reduction to characterize the conformational landscape of small peptides Proteins: Struct., Funct., Bioinformatics 78 2010 223 235
-
(2010)
Proteins: Struct., Funct., Bioinformatics
, vol.78
, pp. 223-235
-
-
Stamati, H.1
Clementi, C.2
Kavraki, L.3
-
75
-
-
68949127591
-
Thermodynamics of beta-sheet formation in polyglutamine
-
Vitalis A., Lyle N., and Pappu R. Thermodynamics of beta-sheet formation in polyglutamine Biophys. J. 97 2009 303 311
-
(2009)
Biophys. J.
, vol.97
, pp. 303-311
-
-
Vitalis, A.1
Lyle, N.2
Pappu, R.3
-
76
-
-
50249168222
-
Role of water in mediating the assembly of Alzheimer amyloid-beta abeta16-22 protofilaments
-
Krone M., Hua L., Soto P., Zhou R., Berne B., and Shea J. Role of water in mediating the assembly of Alzheimer amyloid-beta abeta16-22 protofilaments J. Am. Chem. Soc. 130 2008 11066 11072
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 11066-11072
-
-
Krone, M.1
Hua, L.2
Soto, P.3
Zhou, R.4
Berne, B.5
Shea, J.6
-
77
-
-
79955440719
-
Eisenberg, characteristics of amyloid-related oligomers revealed by crystal structures of macrocyclic beta-sheet mimics
-
Liu M., Sawaya P., Cheng J., Zheng J., and Nowick D. Eisenberg, characteristics of amyloid-related oligomers revealed by crystal structures of macrocyclic beta-sheet mimics J. Am. Chem. Soc. 133 2011 6736 6744
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 6736-6744
-
-
Liu, M.1
Sawaya, P.2
Cheng, J.3
Zheng, J.4
Nowick, D.5
-
78
-
-
71749100900
-
Dynamics and stability of amyloid-like steric zipper assemblies with hydrophobic dry interfaces
-
Vitagliano L., Stanzione F., De Simone A., and Esposito L. Dynamics and stability of amyloid-like steric zipper assemblies with hydrophobic dry interfaces Biopolymers 91 2009 1161 1171
-
(2009)
Biopolymers
, vol.91
, pp. 1161-1171
-
-
Vitagliano, L.1
Stanzione, F.2
De Simone, A.3
Esposito, L.4
-
79
-
-
68949107624
-
Secondary structure propensities in peptide folding simulations: A systematic comparison of molecular mechanics interaction schemes
-
Matthes D., and de Groot B. Secondary structure propensities in peptide folding simulations: a systematic comparison of molecular mechanics interaction schemes Biophys. J. 97 2009 599 608
-
(2009)
Biophys. J.
, vol.97
, pp. 599-608
-
-
Matthes, D.1
De Groot, B.2
-
80
-
-
79955622216
-
Effects of all-atom force fields on amyloid oligomerization: Replica exchange molecular dynamics simulations of the ab16-22 dimer and trimer
-
Nguyen P., Lid M., and Derreumaux P. Effects of all-atom force fields on amyloid oligomerization: replica exchange molecular dynamics simulations of the ab16-22 dimer and trimer Phys. Chem. Chem. Phys. 13 2011 9778 9788
-
(2011)
Phys. Chem. Chem. Phys.
, vol.13
, pp. 9778-9788
-
-
Nguyen, P.1
Lid, M.2
Derreumaux, P.3
-
81
-
-
34247234602
-
The Alzheimer's peptides abeta40 and 42 adopt distinct conformations in water: A combined MD/NMR study
-
Sgourakis N., Yan Y., McCallum S., Wang C., and Garcia A. The Alzheimer's peptides abeta40 and 42 adopt distinct conformations in water: a combined MD/NMR study J. Mol. Biol. 368 2007 1448 1457
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 1448-1457
-
-
Sgourakis, N.1
Yan, Y.2
McCallum, S.3
Wang, C.4
Garcia, A.5
-
82
-
-
61949163833
-
Factors that affect the degree of twist in beta-sheet structures: A molecular dynamics simulation study of a cross-beta filament of the gnnqqny peptide
-
Periole X., Rampioni A., Vendruscolo M., and Mark A. Factors that affect the degree of twist in beta-sheet structures: a molecular dynamics simulation study of a cross-beta filament of the gnnqqny peptide. J. Phys. Chem. B 113 2009 1728 1737
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 1728-1737
-
-
Periole, X.1
Rampioni, A.2
Vendruscolo, M.3
Mark, A.4
-
83
-
-
0037089015
-
Calculation of the free energy of solvation for neutral analogs of amino acid side chains
-
Villa A., and Mark A.E. Calculation of the free energy of solvation for neutral analogs of amino acid side chains J. Comput. Chem. 23 2002 548 553
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 548-553
-
-
Villa, A.1
Mark, A.E.2
-
84
-
-
12244249201
-
Self-propagating, molecular-level polymorphism in Alzheimer's beta-amyloid fibrils
-
Petkova A.T., Leapman R.D., Guo Z., Yau W.M., Mattson M.P., and Tycko R. Self-propagating, molecular-level polymorphism in Alzheimer's beta-amyloid fibrils Science 307 2005 262 265
-
(2005)
Science
, vol.307
, pp. 262-265
-
-
Petkova, A.T.1
Leapman, R.D.2
Guo, Z.3
Yau, W.M.4
Mattson, M.P.5
Tycko, R.6
-
85
-
-
84860389674
-
Amyloid-beta forms fibrils by nucleated conformational conversion of oligomers
-
Lee J., Culyba E.K., Powers E.T., and Kelly J.W. Amyloid-beta forms fibrils by nucleated conformational conversion of oligomers Nat. Chem. Biol. 7 2011 602 609
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 602-609
-
-
Lee, J.1
Culyba, E.K.2
Powers, E.T.3
Kelly, J.W.4
-
86
-
-
70349658765
-
Thermodynamic selection of steric zipper patterns in the amyloid cross-beta spine
-
Park J., Kahn B., and Hwang W. Thermodynamic selection of steric zipper patterns in the amyloid cross-beta spine PLoS Comput. Biol. 5 2009 e1000492
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1000492
-
-
Park, J.1
Kahn, B.2
Hwang, W.3
-
87
-
-
79251631002
-
Ion mobility-mass spectrometry reveals a conformational conversion from random assembly to beta-sheet in amyloid fibril formation
-
Bleiholder C., Dupuis N., Wyttenbach T., and Bowers M. Ion mobility-mass spectrometry reveals a conformational conversion from random assembly to beta-sheet in amyloid fibril formation Nat. Chem. 3 2011 172 177
-
(2011)
Nat. Chem.
, vol.3
, pp. 172-177
-
-
Bleiholder, C.1
Dupuis, N.2
Wyttenbach, T.3
Bowers, M.4
-
88
-
-
57149102288
-
A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates
-
Auer S., Meersman F., Dobson C., and Vendruscolo M. A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates PLoS Comput. Biol. 11 2008 e1000222
-
(2008)
PLoS Comput. Biol.
, vol.11
, pp. 1000222
-
-
Auer, S.1
Meersman, F.2
Dobson, C.3
Vendruscolo, M.4
-
89
-
-
79960858100
-
Role of hydration force in the self-assembly of collagens and amyloid steric zipper filaments
-
Ravikumar K., and Hwang W. Role of hydration force in the self-assembly of collagens and amyloid steric zipper filaments J. Am. Chem. Soc. 133 2011 11766 11773
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 11766-11773
-
-
Ravikumar, K.1
Hwang, W.2
-
90
-
-
77449111998
-
The clustering and spatial arrangement of beta-sheet sequence, but not order, govern alpha-synuclein fibrillogenesis
-
Suk J.E., Lokappa S.B., and Ulmer T.S. The clustering and spatial arrangement of beta-sheet sequence, but not order, govern alpha-synuclein fibrillogenesis Biochemistry 49 2010 1533 1540
-
(2010)
Biochemistry
, vol.49
, pp. 1533-1540
-
-
Suk, J.E.1
Lokappa, S.B.2
Ulmer, T.S.3
-
91
-
-
79952498441
-
Solid-state NMR spectroscopic investigation of abeta protofibrils: Implication of a beta-sheet remodeling upon maturation into terminal amyloid fibrils
-
Scheidt H., Morgado I., Rothemund S., Huster D., and Fändrich M. Solid-state NMR spectroscopic investigation of abeta protofibrils: implication of a beta-sheet remodeling upon maturation into terminal amyloid fibrils Angew. Chem., Int. Ed. 50 2011 2837 2840
-
(2011)
Angew. Chem., Int. Ed.
, vol.50
, pp. 2837-2840
-
-
Scheidt, H.1
Morgado, I.2
Rothemund, S.3
Huster, D.4
Fändrich, M.5
-
92
-
-
78049348054
-
Under water's influence
-
Hummer G. Under water's influence Nat. Chem. 2 2010 906 907
-
(2010)
Nat. Chem.
, vol.2
, pp. 906-907
-
-
Hummer, G.1
-
93
-
-
46249092554
-
GROMACS 4.0: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess B., Kutzner C., Van Der Spoel D., and Lindahl E. GROMACS 4.0: algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comput. 4 2008 435 447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
94
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen H.J.C., Postma J.P.M., van Gunsteren W.F., DiNola A., and Haak J.R. Molecular dynamics with coupling to an external bath J. Chem. Phys. 81 1984 3684 3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
95
-
-
33846086933
-
Canonical sampling through velocity rescaling
-
Bussi G., Donadio D., and Parrinello M. Canonical sampling through velocity rescaling J. Chem. Phys. 126 2007 014101
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 014101
-
-
Bussi, G.1
Donadio, D.2
Parrinello, M.3
-
96
-
-
38749123962
-
P-lincs: A parallel linear constraint solver for molecular simulation
-
Hess B. P-lincs: a parallel linear constraint solver for molecular simulation J. Chem. Theory Comput. 4 2008 116 122
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 116-122
-
-
Hess, B.1
-
97
-
-
0001585978
-
Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems
-
Feenstra K.A., Hess B., and Berendsen H.J.C. Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems J. Comput. Chem. 20 1999 786 798
-
(1999)
J. Comput. Chem.
, vol.20
, pp. 786-798
-
-
Feenstra, K.A.1
Hess, B.2
Berendsen, H.J.C.3
-
98
-
-
27344454932
-
GROMACS: Fast, flexible, and free
-
van der Spoel D., Lindahl E., Hess B., Groenhof G., Mark A.E., and Berendsen H.J. GROMACS: fast, flexible, and free J. Comput. Chem. 26 2005 1701 1718
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.6
-
99
-
-
0003544049
-
-
Hochschulverlag AG an der ETH Zürich Zürich, Switzerland
-
van Gunsteren W.F., Billeter S.R., Eising A.A., Hünenberger P.H., Krüger P., and Mark A.E. Biomolecular Simulation: The GROMOS96 Manual and User Guide 1996 Hochschulverlag AG an der ETH Zürich Zürich, Switzerland
-
(1996)
Biomolecular Simulation: The GROMOS96 Manual and User Guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
Hünenberger, P.H.4
Krüger, P.5
Mark, A.E.6
-
100
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
D. Reidel Publishing Company Dordrecht, Holland
-
Berendsen H.J.C., Postma J.P.M., van Gunsteren W.F., and Hermans J. Interaction models for water in relation to protein hydration Intermolecular Forces 1981 D. Reidel Publishing Company Dordrecht, Holland 331 342
-
(1981)
Intermolecular Forces
, pp. 331-342
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Hermans, J.4
-
101
-
-
84986440341
-
Settle: An analytical version of the shake and rattle algorithm for rigid water models
-
Miyamoto S., and Kollman P.A. Settle: an analytical version of the shake and rattle algorithm for rigid water models J. Comput. Chem. 13 1992 952 962
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
102
-
-
33846823909
-
Particle mesh Ewald: An n-log(n) method for Ewald sums in large systems
-
Darden T., York D., and Pedersen L. Particle mesh Ewald: an n-log(n) method for Ewald sums in large systems J. Chem. Phys. 98 1993 10089 10092
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
103
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann U., Perera L., Berkowitz M.L., Darden T., Lee H., and Pedersen L.G. A smooth particle mesh Ewald method J. Chem. Phys. 103 1995 8577 8593
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
104
-
-
0030931612
-
Prediction of protein conformational freedom from distance constraints
-
de Groot B., van Aalten D., Scheek R., Amadei A., Vriend G., and Berendsen H. Prediction of protein conformational freedom from distance constraints Proteins: Struct., Funct., Bioinformatics 29 1997 140 251
-
(1997)
Proteins: Struct., Funct., Bioinformatics
, vol.29
, pp. 140-251
-
-
De Groot, B.1
Van Aalten, D.2
Scheek, R.3
Amadei, A.4
Vriend, G.5
Berendsen, H.6
-
105
-
-
0001113667
-
Modeling self-assembling of proteins: Assembled structures, relaxation dynamics, and phase coexistence
-
Vekhter B., and Berry R.S. Modeling self-assembling of proteins: assembled structures, relaxation dynamics, and phase coexistence J. Chem. Phys. 110 1999 2195 2201
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 2195-2201
-
-
Vekhter, B.1
Berry, R.S.2
-
106
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W., and Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers 12 1983 2577 2637
-
(1983)
Biopolymers
, vol.12
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
107
-
-
35748935079
-
Wordom: A program for efficient analysis of molecular dynamics simulations
-
Seeber M., Cecchini M., Rao F., Settanni G., and Caflisch A. Wordom: a program for efficient analysis of molecular dynamics simulations Bioinformatics 23 2007 2625 2627
-
(2007)
Bioinformatics
, vol.23
, pp. 2625-2627
-
-
Seeber, M.1
Cecchini, M.2
Rao, F.3
Settanni, G.4
Caflisch, A.5
-
108
-
-
84873610121
-
-
R Development Core Team, R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, ISBN 3-900051-07-0 (2010)
-
R Development Core Team, R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, ISBN 3-900051-07-0 (2010).
-
-
-
-
112
-
-
0001138328
-
Algorithm AS 136: A K-means clustering algorithm
-
Hartigan J., and Wong M. Algorithm AS 136: a K-means clustering algorithm Appl. Stat. 28 1979 100 108
-
(1979)
Appl. Stat.
, vol.28
, pp. 100-108
-
-
Hartigan, J.1
Wong, M.2
-
113
-
-
0023905024
-
A criterion for determining the number of groups in a data set using sum-of-squares clustering
-
Krzanowski W., and Lai Y. A criterion for determining the number of groups in a data set using sum-of-squares clustering Biometrics 44 1988 23 34
-
(1988)
Biometrics
, vol.44
, pp. 23-34
-
-
Krzanowski, W.1
Lai, Y.2
-
115
-
-
0032201716
-
An optimal algorithm for approximate nearest neighbor searching fixed dimensions
-
Arya S., Mount D., Netanyahu N., Silverman R., and Wu A. An optimal algorithm for approximate nearest neighbor searching fixed dimensions J. ACM 45 1998 891 923
-
(1998)
J. ACM
, vol.45
, pp. 891-923
-
-
Arya, S.1
Mount, D.2
Netanyahu, N.3
Silverman, R.4
Wu, A.5
-
116
-
-
0001098205
-
Estimation of principal components and related models by iterative least squares
-
Wold H. Estimation of principal components and related models by iterative least squares Multivariate Anal. 1 1966 391 420
-
(1966)
Multivariate Anal.
, vol.1
, pp. 391-420
-
-
Wold, H.1
|