-
1
-
-
0027441950
-
Essential dynamics of proteins
-
Amadei,A. et al. (1993) Essential dynamics of proteins. Proteins: Struct. Funct. Genet., 17, 412-425.
-
(1993)
Proteins: Struct. Funct. Genet
, vol.17
, pp. 412-425
-
-
Amadei, A.1
-
2
-
-
0035828630
-
On the calculation of entropy from covariance matrices of the atomic fluctuations
-
Andricioaei,I. and Karplus,M. (2001) On the calculation of entropy from covariance matrices of the atomic fluctuations. J. Chem Phys., 115, 6289-6292.
-
(2001)
J. Chem Phys
, vol.115
, pp. 6289-6292
-
-
Andricioaei, I.1
Karplus, M.2
-
3
-
-
0033954256
-
The protein data bank
-
Berman,H.M. et al. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
4
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimizatJon, and dynamics calculations
-
Brooks,B.R. et al. (1983) CHARMM: A program for macromolecular energy, minimizatJon, and dynamics calculations. J. Comput Chem., 4, 187-217.
-
(1983)
J. Comput Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
-
5
-
-
10844230140
-
Replica exchange molecular dynamics simulations or amyloid peptide aggregation
-
Cecchini,M. et al. (2004) Replica exchange molecular dynamics simulations or amyloid peptide aggregation. J. Chem Phys., 121 10748-10756.
-
(2004)
J. Chem Phys
, vol.121
, pp. 10748-10756
-
-
Cecchini, M.1
-
6
-
-
0003166498
-
Protein folding in the landscape perspective: Chevron plots and non-Arrhenius kinetics
-
Chan,H.S. and Dill,K.A. (1998) Protein folding in the landscape perspective: Chevron plots and non-Arrhenius kinetics. Proteins: Struct. Funct. Bioinformatics, 30, 2-33.
-
(1998)
Proteins: Struct. Funct. Bioinformatics
, vol.30
, pp. 2-33
-
-
Chan, H.S.1
Dill, K.A.2
-
9
-
-
0032729435
-
Exploring expression data: Identification and analysis of coexpressed Genes
-
Heyer,L.J. et al. (1999) Exploring expression data: Identification and analysis of coexpressed Genes. Genome Res., 9, 1106-1115.
-
(1999)
Genome Res
, vol.9
, pp. 1106-1115
-
-
Heyer, L.J.1
-
10
-
-
0029878720
-
VMD-Visual molecular dynamics
-
Humphrey,W. et al. (1996) VMD-Visual molecular dynamics. J. Mol. Graph. Model., 14, 33-38.
-
(1996)
J. Mol. Graph. Model
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
-
11
-
-
0014129195
-
Hierarchical clustering schemes
-
Johnson,S. (1967) Hierarchical clustering schemes. Psychomeirika, 32, 241-254.
-
(1967)
Psychomeirika
, vol.32
, pp. 241-254
-
-
Johnson, S.1
-
12
-
-
0042415783
-
Namd2: Greater scalability for parallel molecular dynamics
-
Kalé,L. et al. (1999) Namd2: Greater scalability for parallel molecular dynamics. J. Comput. Phys., 283-312.
-
(1999)
J. Comput. Phys
, pp. 283-312
-
-
Kalé, L.1
-
13
-
-
33846512402
-
A consensus view of protein dynamics
-
Rueda,M. et al. (2007) A consensus view of protein dynamics. Proc. Natl Acad. Sci. USA., 104, 796-801.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 796-801
-
-
Rueda, M.1
-
14
-
-
14144255497
-
φ-Value analysis by molecular dynamics simulations of reversible folding
-
Settanni,G. et al. (2005) φ-Value analysis by molecular dynamics simulations of reversible folding. Proc. Natl Acad. Sci. USA, 102, 628-633.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 628-633
-
-
Settanni, G.1
-
15
-
-
6344294816
-
The coupling of structural fluctuations to hydride transfer in dihydrofolate reductase
-
Thorpe,I. and Brooks C.L.III (2004) The coupling of structural fluctuations to hydride transfer in dihydrofolate reductase. Proteins: Struct. Funct. Bioinformatics, 57, 444 457.
-
(2004)
Proteins: Struct. Funct. Bioinformatics
, vol.57
, pp. 444-457
-
-
Thorpe, I.1
Brooks III, C.L.2
-
16
-
-
27344454932
-
Gromacs: Fast, flexible, and free
-
van der Spoel,D. et al. (2005) Gromacs: Fast, flexible, and free. J. Comput Chem., 26, 1701-1718.
-
(2005)
J. Comput Chem
, vol.26
, pp. 1701-1718
-
-
van der Spoel, D.1
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