-
1
-
-
0033849738
-
Review: History of the amyloid fibril
-
Sipe, J. D. & Cohen, A. S. Review: history of the amyloid fibril. J. Struct. Biol. 130, 88-98 (2000).
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 88-98
-
-
Sipe, J.D.1
Cohen, A.S.2
-
2
-
-
0001611370
-
Electron microscopic observations on a fibrous component in amyloid of diverse origins
-
Cohen, A. S. & Calkins, E. Electron microscopic observations on a fibrous component in amyloid of diverse origins. Nature 183, 1202-1203 (1959).
-
(1959)
Nature
, vol.183
, pp. 1202-1203
-
-
Cohen, A.S.1
Calkins, E.2
-
3
-
-
0014351967
-
X-ray diffraction studies on amyloid filaments
-
Eanes, E. D. & Glenner, G. G. X-ray diffraction studies on amyloid filaments. J. Histochem. Cytochem. 16, 673-677 (1968).
-
(1968)
J. Histochem. Cytochem.
, vol.16
, pp. 673-677
-
-
Eanes, E.D.1
Glenner, G.G.2
-
4
-
-
0014413467
-
"Cross-β" conformation in proteins
-
Geddes, A. J., Parker, K. D., Atkins, E. D. & Beighton, E. "Cross-β" conformation in proteins. J. Mol. Biol. 32, 343-358 (1968).
-
(1968)
J. Mol. Biol.
, vol.32
, pp. 343-358
-
-
Geddes, A.J.1
Parker, K.D.2
Atkins, E.D.3
Beighton, E.4
-
5
-
-
0031592945
-
Common core structure of amyloid fibrils by synchrotron X-ray diffraction
-
Sunde, M. et al. Common core structure of amyloid fibrils by synchrotron X-ray diffraction. J. Mol. Biol. 273, 729-739 (1997).
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 729-739
-
-
Sunde, M.1
-
6
-
-
0035956924
-
An amyloid-forming peptide from the yeast prion Sup35 reveals a dehydrated β-sheet structure for amyloid
-
Balbirnie, M., Grothe, R. & Eisenberg, D. S. An amyloid-forming peptide from the yeast prion Sup35 reveals a dehydrated β-sheet structure for amyloid. Proc. Natl Acad Sci. USA 98, 2375-2380 (2001).
-
(2001)
Proc. Natl. Acad Sci. USA
, vol.98
, pp. 2375-2380
-
-
Balbirnie, M.1
Grothe, R.2
Eisenberg, D.S.3
-
7
-
-
0038690113
-
Cross-β order and diversity in nanocrystals of an amyloid-forming peptide
-
Diaz-Avalos, R. et al. Cross-β order and diversity in nanocrystals of an amyloid-forming peptide. J. Mol. Biol. 330, 1165-1175 (2003).
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 1165-1175
-
-
Diaz-Avalos, R.1
-
8
-
-
12244249201
-
Self-propagating, molecular-level polymorphism in Alzheimer's β-amyloid fibrils
-
Petkova, A. T. et al. Self-propagating, molecular-level polymorphism in Alzheimer's β-amyloid fibrils. Science 307, 262-265 (2005).
-
(2005)
Science
, vol.307
, pp. 262-265
-
-
Petkova, A.T.1
-
9
-
-
0032506114
-
Propagating structure of Alzheimer's β-amyloid(10-35) is parallel β-sheet with residues in exact register
-
Benzinger, T. L. et al. Propagating structure of Alzheimer's β-amyloid(10-35) is parallel β-sheet with residues in exact register. Proc. Natl Acad. Sci. USA 95, 13407-13412 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 13407-13412
-
-
Benzinger, T.L.1
-
10
-
-
0037168655
-
A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR
-
Petkova, A. T. et al. A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR. Proc. Natl Acad Sci. USA 99, 16742-16747 (2002).
-
(2002)
Proc. Natl. Acad Sci. USA
, vol.99
, pp. 16742-16747
-
-
Petkova, A.T.1
-
11
-
-
0037168656
-
Molecular conformation of a peptide fragment of transthyretin in an amyloid fibril
-
Jaroniec, C. P., MacPhee, C. E., Astrof, N. S., Dobson, C. M. & Griffin, R. G. Molecular conformation of a peptide fragment of transthyretin in an amyloid fibril. Proc. Natl Acad Sci. USA 99, 16748-16753 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16748-16753
-
-
Jaroniec, C.P.1
MacPhee, C.E.2
Astrof, N.S.3
Dobson, C.M.4
Griffin, R.G.5
-
12
-
-
0031825554
-
From the globular to the fibrous state: Protein structure and structural conversion in amyloid formation
-
Sunde, M. & Blake, C. C. From the globular to the fibrous state: protein structure and structural conversion in amyloid formation. Q. Rev. Biophys. 31, 1-39 (1998).
-
(1998)
Q. Rev. Biophys.
, vol.31
, pp. 1-39
-
-
Sunde, M.1
Blake, C.C.2
-
13
-
-
12244285938
-
Molecular basis for amyloid fibril formation and stability
-
Sumner Makin, O., Atkins, E., Sikorski, P., Johansson, J. & Serpell, L. C. Molecular basis for amyloid fibril formation and stability. Proc. Natl Acad Sci. USA 102, 315-320 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 315-320
-
-
Sumner Makin, O.1
Atkins, E.2
Sikorski, P.3
Johansson, J.4
Serpell, L.C.5
-
14
-
-
0035822703
-
Identification of a subunit interface in transthyretin amyloid fibrils: Evidence for self-assembly from oligomeric building blocks
-
Serag, A. A., Altenbach, C., Gingery, M., Hubbell, W. L. & Yeates, T. O. Identification of a subunit interface in transthyretin amyloid fibrils: evidence for self-assembly from oligomeric building blocks. Biochemistry 40, 9089-9096 (2001).
-
(2001)
Biochemistry
, vol.40
, pp. 9089-9096
-
-
Serag, A.A.1
Altenbach, C.2
Gingery, M.3
Hubbell, W.L.4
Yeates, T.O.5
-
15
-
-
0037174998
-
Structural and dynamic features of Alzheimer's Aβ peptide in amyloid fibrils studied by site-directed spin labeling
-
Torok, M. et al. Structural and dynamic features of Alzheimer's Aβ peptide in amyloid fibrils studied by site-directed spin labeling. J. Biol. Chem. 277, 40810-40815 (2002).
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 40810-40815
-
-
Torok, M.1
-
16
-
-
0042847751
-
Cryo-electron microscopy structure of an SH3 amyloid fibril and model of the molecular packing
-
Jimenez, J. L. et al. Cryo-electron microscopy structure of an SH3 amyloid fibril and model of the molecular packing. EMBO J. 18, 815-821 (1999).
-
(1999)
EMBO J.
, vol.18
, pp. 815-821
-
-
Jimenez, J.L.1
-
17
-
-
1242340413
-
β-helix is a likely core structure of yeast prion Sup35 amyloid fibers
-
Kishimoto, A. et al. β-Helix is a likely core structure of yeast prion Sup35 amyloid fibers. Biochem. Biophys. Res. Commun. 315, 739-745 (2004).
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.315
, pp. 739-745
-
-
Kishimoto, A.1
-
18
-
-
1542600164
-
Mapping Aβ amyloid fibril secondary structure using scanning proline mutagenesis
-
Williams, A. D. et al. Mapping Aβ amyloid fibril secondary structure using scanning proline mutagenesis. J. Mol. Biol. 335, 833-842 (2004).
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 833-842
-
-
Williams, A.D.1
-
19
-
-
0028308104
-
[URE3] as an altered URE2 protein: Evidence for a prion analog in Socchoromyees cerevisiae
-
Wickner, R. B. [URE3] as an altered URE2 protein: evidence for a prion analog in Socchoromyees cerevisiae. Science 264, 566-569 (1994).
-
(1994)
Science
, vol.264
, pp. 566-569
-
-
Wickner, R.B.1
-
20
-
-
0029780647
-
Support for the prion hypothesis for inheritance of a phenotypic trait in yeast
-
Patino, M. M., Liu, J. J., Glover, J. R. & Lindquist, S. Support for the prion hypothesis for inheritance of a phenotypic trait in yeast. Science 273, 622-626 (1996).
-
(1996)
Science
, vol.273
, pp. 622-626
-
-
Patino, M.M.1
Liu, J.J.2
Glover, J.R.3
Lindquist, S.4
-
21
-
-
0034714351
-
Nucleated conformational conversion and the replication of conformational information by a prion determinant
-
Serio, T. R. et al. Nucleated conformational conversion and the replication of conformational information by a prion determinant. Science 289, 1317-1321 (2000).
-
(2000)
Science
, vol.289
, pp. 1317-1321
-
-
Serio, T.R.1
-
22
-
-
1642617641
-
Protein-only transmission of three yeast prion strains
-
King, C. Y. & Diaz-Avalos, R. Protein-only transmission of three yeast prion strains. Nature 428, 319-323 (2004).
-
(2004)
Nature
, vol.428
, pp. 319-323
-
-
King, C.Y.1
Diaz-Avalos, R.2
-
23
-
-
1642633056
-
Conformational variations in an infectious protein determine prion strain differences
-
Tanaka, M., Chien, P., Naber, N., Cooke, R. & Weissman, J. S. Conformational variations in an infectious protein determine prion strain differences. Nature 428, 323-328 (2004).
-
(2004)
Nature
, vol.428
, pp. 323-328
-
-
Tanaka, M.1
Chien, P.2
Naber, N.3
Cooke, R.4
Weissman, J.S.5
-
24
-
-
0032568793
-
A critical role for amino-terminal glutamine/asparagine repeats in the formation and propagation of a yeast prion
-
DePace, A. H., Santoso, A., Hillner, P. & Weissman, J. S. A critical role for amino-terminal glutamine/asparagine repeats in the formation and propagation of a yeast prion. Cell 93, 1241-1252 (1998).
-
(1998)
Cell
, vol.93
, pp. 1241-1252
-
-
DePace, A.H.1
Santoso, A.2
Hillner, P.3
Weissman, J.S.4
-
25
-
-
0034695569
-
Molecular basis of a yeast prion species barrier
-
Santoso, A., Chien, P., Osherovich, L. Z. & Weissman, J. S. Molecular basis of a yeast prion species barrier. Cell 100, 277-288 (2000).
-
(2000)
Cell
, vol.100
, pp. 277-288
-
-
Santoso, A.1
Chien, P.2
Osherovich, L.Z.3
Weissman, J.S.4
-
26
-
-
0027195933
-
Seeding "one-dimensional crystallization" of amyloid: A pathogenic mechanism in Alzheimer's disease and scrapie?
-
Jarrett, J. T. & Lansbury, P. T. Jr Seeding "one-dimensional crystallization" of amyloid: a pathogenic mechanism in Alzheimer's disease and scrapie? Cell 73, 1055-1058 (1993).
-
(1993)
Cell
, vol.73
, pp. 1055-1058
-
-
Jarrett, J.T.1
Lansbury Jr., P.T.2
-
27
-
-
0027772959
-
Shape complementarity at protein/protein interfaces
-
Lawrence, M. C. & Colman, P. M. Shape complementarity at protein/protein interfaces. J. Mol. Biol. 234, 946-950 (1993).
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 946-950
-
-
Lawrence, M.C.1
Colman, P.M.2
-
28
-
-
3242735504
-
An amyloid-forming segment of β2-microglobulin suggests a molecular model for the fibril
-
Ivanova, M. L. Sawaya, M. R., Gingery, M., Attinger, A. & Eisenberg, D. An amyloid-forming segment of β2-microglobulin suggests a molecular model for the fibril. Proc. Natl Acad. Sci. USA 101, 10584-10589 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10584-10589
-
-
Ivanova, M.L.1
Sawaya, M.R.2
Gingery, M.3
Attinger, A.4
Eisenberg, D.5
-
29
-
-
0037047118
-
The protofilament structure of insulin amyloid fibrils
-
Jimenez, J. L. et al. The protofilament structure of insulin amyloid fibrils. Proc. Natl Acad. Sci. USA 99, 9196-9201 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 9196-9201
-
-
Jimenez, J.L.1
-
30
-
-
0028283985
-
Glutamine repeats as polar zippers: Their possible role in inherited neurodegenerative diseases
-
Perutz, M. F., Johnson, T., Suzuki, M. & Finch, J. T. Glutamine repeats as polar zippers: their possible role in inherited neurodegenerative diseases. Proc. Natl Acad. Sci. USA 91, 5355-5358 (1994).
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 5355-5358
-
-
Perutz, M.F.1
Johnson, T.2
Suzuki, M.3
Finch, J.T.4
-
31
-
-
0037313696
-
A primordial structure underlying amyloid
-
Pickersgill, R. W. A primordial structure underlying amyloid. Structure (Camb.) 11, 137-138 (2003).
-
(2003)
Structure (Camb.)
, vol.11
, pp. 137-138
-
-
Pickersgill, R.W.1
-
32
-
-
0036052739
-
Ideas of order for amyloid fibril structure
-
Wetzel, R. Ideas of order for amyloid fibril structure. Structure (Camb.) 10, 1031-1036 (2002).
-
(2002)
Structure (Camb.)
, vol.10
, pp. 1031-1036
-
-
Wetzel, R.1
-
33
-
-
0037117519
-
Amyloid fibers are water-filled nanotubes
-
Perutz, M. F., Finch, J. T., Berriman, J. & Lesk, A. Amyloid fibers are water-filled nanotubes. Proc. Natl Acad. Sci. USA 99, 5591-5595 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5591-5595
-
-
Perutz, M.F.1
Finch, J.T.2
Berriman, J.3
Lesk, A.4
-
34
-
-
2942616602
-
Evidence for assembly of prions with left-handed β-helices into trimers
-
Govaerts, C., Wille, H., Prusiner, S. B. & Cohen, F. E. Evidence for assembly of prions with left-handed β-helices into trimers. Proc. Natl Acad. Sci. USA 101, 8342-8347 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8342-8347
-
-
Govaerts, C.1
Wille, H.2
Prusiner, S.B.3
Cohen, F.E.4
-
35
-
-
0027190613
-
Kinetics of folding of the all-β sheet protein interleukin-1 beta
-
Varley, P. et al. Kinetics of folding of the all-β sheet protein interleukin-1 beta. Science 260, 1110-1113 (1993).
-
(1993)
Science
, vol.260
, pp. 1110-1113
-
-
Varley, P.1
-
36
-
-
0032562762
-
Events in the kinetic folding pathway of a small, all β-sheet protein
-
Sivaraman, T., Kumar, T. K., Chang, D. K., Lin, W. Y. & Yu, C. Events in the kinetic folding pathway of a small, all β-sheet protein. J. Biol. Chem. 273, 10181-10189 (1998).
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 10181-10189
-
-
Sivaraman, T.1
Kumar, T.K.2
Chang, D.K.3
Lin, W.Y.4
Yu, C.5
-
37
-
-
0000152788
-
Interpretation of protein folding and binding with atomic solvation parameters
-
Eisenberg, D., Wesson, M. & Yamashita, M. Interpretation of protein folding and binding with atomic solvation parameters. Chem. Scr. 29A, 217-221 (1989).
-
(1989)
Chem. Scr.
, vol.29 A
, pp. 217-221
-
-
Eisenberg, D.1
Wesson, M.2
Yamashita, M.3
-
39
-
-
0037022563
-
Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation
-
Richardson, J. S. & Richardson, D. C. Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation. Proc. Natl Acad. Sci. USA 99, 2754-2759 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 2754-2759
-
-
Richardson, J.S.1
Richardson, D.C.2
-
41
-
-
0037044732
-
Charge attraction and beta propensity are necessary for amyloid fibril formation from tetrapeptides
-
Tjernberg, L., Hosia, W., Bark, N., Thyberg, J. & Johansson, J. Charge attraction and beta propensity are necessary for amyloid fibril formation from tetrapeptides. J. Biol. Chem. 277, 43243-43246 (2002).
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 43243-43246
-
-
Tjernberg, L.1
Hosia, W.2
Bark, N.3
Thyberg, J.4
Johansson, J.5
-
42
-
-
0036845354
-
The behaviour of polyamino acids reveals an inverse side chain effect in amyloid structure formation
-
Fandrich, M. & Dobson, C. M. The behaviour of polyamino acids reveals an inverse side chain effect in amyloid structure formation. EMBO J. 21, 5682-5690 (2002).
-
(2002)
EMBO J.
, vol.21
, pp. 5682-5690
-
-
Fandrich, M.1
Dobson, C.M.2
-
43
-
-
2142686641
-
Recent developments in micro-diffraction on protein crystals
-
Riekel, C. Recent developments in micro-diffraction on protein crystals. J. Synchrotron Radiat. 11, 4-6 (2004).
-
(2004)
J. Synchrotron Radiat.
, vol.11
, pp. 4-6
-
-
Riekel, C.1
-
44
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
45
-
-
0028103275
-
Collaborative Computational Project Number 4, the CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project Number 4, The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D 50, 760-763 (1994).
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
46
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110-119 (1991).
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
47
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A. & Dodson, E. J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D 53, 240-255 (1997).
-
(1997)
Acta Crystallogr. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
48
-
-
0000243829
-
PROCHECK - A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. PROCHECK - a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291 (1993).
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
Macarthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
49
-
-
0027542118
-
Quality control of protein models: Directional atomic contact analysis
-
Vriend, G. & Sander, C. Quality control of protein models: directional atomic contact analysis, J. Appl. Crystallogr. 26, 47-60 (1993).
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 47-60
-
-
Vriend, G.1
Sander, C.2
-
50
-
-
0004293491
-
-
DeLano Scientific, San Carlos, California
-
DeLano, W. L. The PyMOL User's Manual (DeLano Scientific, San Carlos, California, 2002).
-
(2002)
The PyMOL User's Manual
-
-
DeLano, W.L.1
|