Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry

Analytical Chemistry

Volumn 81, Issue 15, 2009, Pages 6165-6174

  Soga, Tomoyoshi ^a   Igarashi, Kaori ^a   Ito, Chiharu ^a   Mizobuchi, Katsuo ^b   Zimmermann, Hans Peter ^c   Tomita, Masaru ^a  

^a KEIO UNIVERSITY   (Japan)

^b YOKOGAWA ANALYTICAL SYSTEMS INC   (Japan)

^c AGILENT TECHNOLOGIES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANION COMPLEX; ANIONIC COMPOUNDS; CAPILLARY ELECTROPHORESIS-MASS SPECTROMETRIES; COENZYME A; COMPREHENSIVE ANALYSIS; DETECTION LIMITS; DETECTION SENSITIVITY; METABOLIC PATHWAYS; METABOLOMIC; MOUSE LIVER; NICKEL IONS; SHEATH FLOWS; TIME OF FLIGHT MASS SPECTROMETRY;

BIOMOLECULES; CAPILLARY ELECTROPHORESIS; CARBOXYLIC ACIDS; DYES; ELECTROCHEMISTRY; ELECTROLYSIS; ELECTROSPRAY IONIZATION; IRON; IRON OXIDES; MASS SPECTROMETERS; MASS SPECTROMETRY; METABOLISM; METABOLITES; NEEDLES; NEGATIVE IONS; NUCLEIC ACIDS; ORGANIC ACIDS; PLATINUM; SIGNAL TO NOISE RATIO; SMELTING; STAINLESS STEEL;

PLATINUM METAL COMPOUNDS;

ANION; CARBOXYLIC ACID DERIVATIVE; COENZYME A; IRON OXIDE; METAL CHELATE; METAL COMPLEX; NICKEL; NUCLEOTIDE DERIVATIVE; PLATINUM;

ANIMAL TISSUE; ARTICLE; CAPILLARY ELECTROPHORESIS; COMPLEX FORMATION; CONTROLLED STUDY; CORROSION; ELECTROLYSIS; ELECTROSPRAY MASS SPECTROMETRY; MEASUREMENT; METABOLITE; METABOLOMICS; MOUSE; NONHUMAN; OXIDATION; PRECIPITATION; QUANTITATIVE ANALYSIS; SENSITIVITY ANALYSIS; SIGNAL NOISE RATIO; TIME OF FLIGHT MASS SPECTROMETRY;

ANIMALS; ANIONS; BIOLOGICAL MARKERS; ELECTROPHORESIS, CAPILLARY; HEPATOCYTES; MASS SPECTROMETRY; METABOLOMICS; MICE; PLATINUM; SENSITIVITY AND SPECIFICITY; STAINLESS STEEL;

EID: 68049109441     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac900675k     Document Type: Article

References (42)

1. Sonenshein, A. L. Nat. Rev. Microbiol. 2007, 5, 917-927.
2. Yang, W. C.; Sedlak, M.; Regnier, F. E.; Mosier, N.; Ho, N.; Adamec, J. Anal. Chem. 2008, 80, 9508-9516.
3. Fiehn, O.; Kopka, J.; Dormann, P.; Altmann, T.; Trethewey, R. N.; Willmitzer, L. Nat. Biotechnol. 2000, 18, 1157-1161.
4. Plumb, R.; Granger, J.; Stumpf, C.; Wilson, I. D.; Evans, J. A.; Lenz, E. M. Analyst 2003, 128, 819-823.
5. Yoshida, H.; Mizukoshi, T.; Hirayama, K.; Miyano, H. J. Agric. Food Chem. 2007, 55, 551-560.
6. Reo, N. V. Drug Chem. Toxicol. 2002, 25, 375-382.
7. Coen, M.; Lenz, E. M.; Nicholson, J. K.; Wilson, I. D.; Pognan, F.; Lindon, J. C. Chem. Res. Toxicol. 2003, 16, 295-303.
8. Coen, M.; Ruepp, S. U.; Lindon, J. C.; Nicholson, J. K.; Pognan, F.; Lenz, E. M.; Wilson, I. D. J. Pharm. Biomed. Anal. 2004, 35, 93-105.
9. Aharoni, A.; Ric de Vos, C. H.; Verhoeven, H. A.; Maliepaard, C. A.; Kruppa, G.; Bino, R.; Goodenowe, D. B. Omics 2002, 6, 217-234.
10. Hirai, M. Y.; Yano, M.; Goodenowe, D. B.; Kanaya, S.; Kimura, T.; Awazuhara, M.; Arita, M.; Fujiwara, T.; Saito, K. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 10205-10210.
11. Soga, T.; Ohashi, Y.; Ueno, Y.; Naraoka, H.; Tomita, M.; Nishioka, T. J. Proteome Res. 2003, 2, 488-494.
12. Edwards, J. L.; Chisolm, C. N.; Shackman, J. G.; Kennedy, R. T. J. Chromatogr., A 2006, 1106, 80-88.
13. Soga, T.; Baran, R.; Suematsu, M.; Ueno, Y.; Ikeda, S.; Sakurakawa, T.; Kakazu, Y.; Ishikawa, T.; Robert, M.; Nishioka, T.; Tomita, M. J. Biol. Chem. 2006, 281, 16768-16776.
14. Ishii, N.; Nakahigashi, K.; Baba, T.; Robert, M.; Soga, T.; Kanai, A.; Hirasawa, T.; Naba, M.; Hirai, K.; Hoque, A.; Ho, P. Y.; Kakazu, Y.; Sugawara, K.; Igarashi, S.; Harada, S.; Masuda, T.; Sugiyama, N.; Togashi, T.; Hasegawa, M.; Takai, Y.; Yugi, K.; Arakawa, K.; Iwata, N.; Toya, Y.; Nakayama, Y.; Nishioka, T.; Shimizu, K.; Mori, H.; Tomita, M. Science 2007, 316, 593-597.
15. Ohashi, Y.; Hirayama, A.; Ishikawa, T.; Nakamura, S.; Shimizu, K.; Ueno, Y.; Tomita, M.; Soga, T. Mol. Biosyst. 2008, 4, 135-147.
16. Yoshida, S.; Imoto, J.; Minato, T.; Oouchi, R.; Sugihara, M.; Imai, T.; Ishiguro, T.; Mizutani, S.; Tomita, M.; Soga, T.; Yoshimoto, H. Appl. Environ. Microbiol. 2008, 74, 2787-2796.
17. Sato, S.; Soga, T.; Nishioka, T.; Tomita, M. Plant J. 2004, 40, 151-163.
18. Kinoshita, A.; Tsukada, K.; Soga, T.; Hishiki, T.; Ueno, Y.; Nakayama, Y.; Tomita, M.; Suematsu, M. J. Biol. Chem. 2007, 282, 10731-10741.
19. Williams, B. J.; Cameron, C. J.; Workman, R.; Broeckling, C. D.; Sumner, L. W.; Smith, J. T. Electrophoresis 2007, 28, 1371-1379.
20. Soga, T.; Ueno, Y.; Naraoka, H.; Ohashi, Y.; Tomita, M.; Nishioka, T. Anal. Chem. 2002, 74, 2233-2239.
21. Lukacs, K. D.; Jorgenson, J. W. J. High Resolut. Chromatogr. Chromatogr. Commun. 1985, 8, 407-411.
22. Soga, T.; Ueno, Y.; Naraoka, H.; Matsuda, K.; Tomita, M.; Nishioka, T. Anal. Chem. 2002, 74, 6224-6229.
23. Soga, T.; Ishikawa, T.; Igarashi, S.; Sugawara, K.; Kakazu, Y.; Tomita, M. J. Chromatogr., A 2007, 1159, 125-133.
24. Cao, P.; Moini, M. Electrophoresis 1998, 19, 2200-2206.
25. Baran, R.; Kochi, H.; Saito, N.; Suematsu, M.; Soga, T.; Nishioka, T.; Robert, M.; Tomita, M. BMC Bioinf. 2006, 7, 530.
26. Hirayama, A.; Kami, K.; Sugimoto, M.; Sugawara, M.; Toki, N.; Onozuka, H.; Kinoshita, T.; Saito, N.; Ochiai, A.; Tomita, M.; Esumi, H.; Soga, T. Cancer Res. 2009, 69, 4918-4925.
27. Katajamaa, M.; Oresic, M. BMC Bioinf. 2005, 6, 179.
28. Katajamaa, M.; Miettinen, J.; Oresic, M. Bioinformatics 2006, 22 (5), 634-636.
29. Cao, P.; Moini, M. J. Am. Soc. Mass Spectrom. 1997, 8, 561-564.
30. Herring, C. J.; Qin, J. Rapid Commun. Mass Spectrom. 1999, 13, 1-7.
31. Smith, A. D.; Moini, M. Anal. Chem. 2001, 73, 240-246.
32. Van Berkel, G. J.; Asano, K. G.; Schnier, P. D. J. Am. Soc. Mass Spectrom. 2001, 12, 853-862.
33. Toyokuni, S. Free Radicical Biol. Med. 1996, 20, 553-566.
34. Soga, T.; Gordon, R. A. J. Chromatigr., A 1997, 767, 223-230.
35. Kowaltowski, A. J.; Vercesi, A. E. Free Radical Biol. Med. 1999, 26, 463-471.
36. Canaviri, E. C.; Feliz, M. R.; Capparelli, A. L. Transition Met. Chem. 1992, 17, 446-448.
37. Champeil, P.; Rigaud, J. L.; Gary-Bobo, C. M. Proc. Natl. Acad. Sci. U.S.A. 1980, 77, 2405-2409.
38. Lvovich, V.; Scheeline, A. Arch. Biochem. Biophys. 1995, 320, 1-13.
39. Takebayashi, Y.; Mitsuma, R.; Imanari, T. Anal. Sci. 1987, 3, 569-572.
40. Ziemniak, S. E.; Jones, M. E.; Combs, K. E. S. J. Solution Chem. 1989, 18, 1133-1152.
41. Stensballe, A.; Andersen, S.; Jensen, O. N. Proteomics 2001, 1, 207-222.
42. Kokubu, M.; Ishihama, Y.; Sato, T.; Nagasu, T.; Oda, Y. Anal. Chem. 2005, 77, 5144-5154.