메뉴 건너뛰기




Volumn 68, Issue 16-18, 2007, Pages 2320-2329

Towards dynamic metabolic network measurements by multi-dimensional NMR-based fluxomics

Author keywords

13C 13C fine coupling; Crude extract; Extraction solvents; Heteronuclear multi dimensional NMR; Metabolic network; Stable isotope labeling

Indexed keywords

CARBON; CARBON DIOXIDE; GLUCOSE; PLANT EXTRACT;

EID: 34547660375     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.phytochem.2007.04.011     Document Type: Article
Times cited : (59)

References (53)
  • 1
    • 11344249260 scopus 로고    scopus 로고
    • Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling
    • Birkemeyer C., Luedemann A., Wagner C., Erban A., and Kopka J. Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling. Trends Biotechnol. 23 (2005) 28-33
    • (2005) Trends Biotechnol. , vol.23 , pp. 28-33
    • Birkemeyer, C.1    Luedemann, A.2    Wagner, C.3    Erban, A.4    Kopka, J.5
  • 2
    • 0000195671 scopus 로고
    • Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy
    • Bodenhausen G., and Ruben D.J. Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy. Chem. Phys. Lett. 69 (1980) 185-189
    • (1980) Chem. Phys. Lett. , vol.69 , pp. 185-189
    • Bodenhausen, G.1    Ruben, D.J.2
  • 3
    • 0000165703 scopus 로고
    • Isotopic applications in NMR studies
    • Elsevier, Amsterdam, Oxford, New York, Tokyo
    • Buncel E., and Jones J.R. Isotopic applications in NMR studies. Isotopes in the Physical and Biomedical Sciences vol. 2 (1991), Elsevier, Amsterdam, Oxford, New York, Tokyo
    • (1991) Isotopes in the Physical and Biomedical Sciences , vol.2
    • Buncel, E.1    Jones, J.R.2
  • 6
    • 0035102856 scopus 로고    scopus 로고
    • Retrobiosynthetic nuclear magnetic resonance analysis of amino acid biosynthesis and intermediary metabolism. Metabolic flux in developing maize kernels
    • Glawischnig E., Gierl A., Tomas A., Bacher A., and Eisenreich W. Retrobiosynthetic nuclear magnetic resonance analysis of amino acid biosynthesis and intermediary metabolism. Metabolic flux in developing maize kernels. Plant Physiol. 125 (2001) 1178-1186
    • (2001) Plant Physiol. , vol.125 , pp. 1178-1186
    • Glawischnig, E.1    Gierl, A.2    Tomas, A.3    Bacher, A.4    Eisenreich, W.5
  • 7
    • 34547712615 scopus 로고    scopus 로고
    • Metabonomics: a new frontier of nuclear magnetic resonance (NMR)
    • Govil G. Metabonomics: a new frontier of nuclear magnetic resonance (NMR). Natl. Acad. Sci. Lett. 27 (2004) 289-299
    • (2004) Natl. Acad. Sci. Lett. , vol.27 , pp. 289-299
    • Govil, G.1
  • 9
    • 33645070537 scopus 로고    scopus 로고
    • Plant metabolomics: from holistic hope, to hype, to hot topic
    • Hall R.D. Plant metabolomics: from holistic hope, to hype, to hot topic. New Phytologist 169 (2005) 453-458
    • (2005) New Phytologist , vol.169 , pp. 453-458
    • Hall, R.D.1
  • 10
    • 84986841516 scopus 로고
    • 13C coupling constants. A review
    • 13C coupling constants. A review. Org. Magn. Reson. 11 (1978) 215-233
    • (1978) Org. Magn. Reson. , vol.11 , pp. 215-233
    • Hansen, P.E.1
  • 11
    • 15844421622 scopus 로고    scopus 로고
    • Effect of dielectric properties of solvents on the quality factor for a beyond 900 MHz cryogenic cooled probe model
    • Horiuchi T., Takahashi M., Kikuchi J., Yokoyama S., and Maeda H. Effect of dielectric properties of solvents on the quality factor for a beyond 900 MHz cryogenic cooled probe model. J. Magn. Reson. 174 (2005) 32-42
    • (2005) J. Magn. Reson. , vol.174 , pp. 32-42
    • Horiuchi, T.1    Takahashi, M.2    Kikuchi, J.3    Yokoyama, S.4    Maeda, H.5
  • 14
    • 0025374145 scopus 로고
    • Proton-proton couplings via carbon-carbon couplings. A three-dimensional NMR approach for assignments of aliphatic resonances in proteins labeled with carbon-13
    • Kay L.E., Ikura M., and Bax A. Proton-proton couplings via carbon-carbon couplings. A three-dimensional NMR approach for assignments of aliphatic resonances in proteins labeled with carbon-13. J. Am. Chem. Soc. 112 (1990) 888-889
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 888-889
    • Kay, L.E.1    Ikura, M.2    Bax, A.3
  • 15
    • 44949291986 scopus 로고
    • Three-dimensional triple-resonance NMR spectroscopy of isotopically enriched proteins
    • Kay L.E., Ikura M., Tschudin R., and Bax A. Three-dimensional triple-resonance NMR spectroscopy of isotopically enriched proteins. J. Magn. Reson. 89 (1990) 496-514
    • (1990) J. Magn. Reson. , vol.89 , pp. 496-514
    • Kay, L.E.1    Ikura, M.2    Tschudin, R.3    Bax, A.4
  • 16
    • 4644255326 scopus 로고    scopus 로고
    • Stable isotope labeling of Arabidopsis thaliana for a hetero-nuclear NMR-based metabolomics
    • Kikuchi J., Shinozaki K., and Hirayama T. Stable isotope labeling of Arabidopsis thaliana for a hetero-nuclear NMR-based metabolomics. Plant Cell Physiol. 45 (2004) 1099-1104
    • (2004) Plant Cell Physiol. , vol.45 , pp. 1099-1104
    • Kikuchi, J.1    Shinozaki, K.2    Hirayama, T.3
  • 17
    • 84886152115 scopus 로고    scopus 로고
    • Hetero-nuclear NMR-based metabolomics
    • Biotechnology in Agriculture and Forestry. Saito K., Dixon R.A., and Willmitzer L. (Eds), Springer-Verlag, Berlin Heidelberg
    • Kikuchi J., and Hirayama T. Hetero-nuclear NMR-based metabolomics. In: Saito K., Dixon R.A., and Willmitzer L. (Eds). Biotechnology in Agriculture and Forestry. Plant Metabolomics vol. 57 (2006), Springer-Verlag, Berlin Heidelberg 93-101
    • (2006) Plant Metabolomics , vol.57 , pp. 93-101
    • Kikuchi, J.1    Hirayama, T.2
  • 18
    • 34547704068 scopus 로고    scopus 로고
    • Practical aspects of stable isotope labeling of higher plants for hetero-nuclear NMR-based metabolomics
    • Kikuchi J., and Hirayama T. Practical aspects of stable isotope labeling of higher plants for hetero-nuclear NMR-based metabolomics. Method Mol. Biol. 358 (2007) 273-286
    • (2007) Method Mol. Biol. , vol.358 , pp. 273-286
    • Kikuchi, J.1    Hirayama, T.2
  • 19
    • 24944591009 scopus 로고    scopus 로고
    • Separation and analysis of nanomole quantities of heparin oligosaccharides using on-line capillary isotachophoresis coupled with NMR detection
    • Korir A.K., Almeida V.K., Malkin D.S., and Larvie C.K. Separation and analysis of nanomole quantities of heparin oligosaccharides using on-line capillary isotachophoresis coupled with NMR detection. Anal. Chem. 77 (2005) 5998-6003
    • (2005) Anal. Chem. , vol.77 , pp. 5998-6003
    • Korir, A.K.1    Almeida, V.K.2    Malkin, D.S.3    Larvie, C.K.4
  • 20
    • 1542376957 scopus 로고    scopus 로고
    • In-depth profiling of lysine-producing Corynebacterium glutamicum by combined analysis of the transcriptome, metabolome, and fluxome
    • Kromer J.O., Sorgenfrei O., Klopprogge K., Heinzle E., and Wittmann C. In-depth profiling of lysine-producing Corynebacterium glutamicum by combined analysis of the transcriptome, metabolome, and fluxome. J. Bacteriol. 186 (2004) 1769-1784
    • (2004) J. Bacteriol. , vol.186 , pp. 1769-1784
    • Kromer, J.O.1    Sorgenfrei, O.2    Klopprogge, K.3    Heinzle, E.4    Wittmann, C.5
  • 21
    • 84901236936 scopus 로고
    • 13C spin-spin coupling constants in structural studies
    • 13C spin-spin coupling constants in structural studies. Russ. Chem. Rev. 57 (1988) 1-17
    • (1988) Russ. Chem. Rev. , vol.57 , pp. 1-17
    • Krivin, L.B.1    Kalabin, G.A.2
  • 22
    • 2342606425 scopus 로고    scopus 로고
    • Quantitative approaches for analysing fluxes through plant metabolic networks using NMR and stable isotope labeling
    • Kruger N.J., Ratcliffe R.G., and Roscher A. Quantitative approaches for analysing fluxes through plant metabolic networks using NMR and stable isotope labeling. Phytochem. Rev. 2 (2003) 17-30
    • (2003) Phytochem. Rev. , vol.2 , pp. 17-30
    • Kruger, N.J.1    Ratcliffe, R.G.2    Roscher, A.3
  • 23
    • 20644467467 scopus 로고    scopus 로고
    • Systems biotechnology for strain improvement
    • Lee S.-Y., Lee D.-Y., and Kim T.-Y. Systems biotechnology for strain improvement. Trends Biotechnol. 23 (2005) 349-358
    • (2005) Trends Biotechnol. , vol.23 , pp. 349-358
    • Lee, S.-Y.1    Lee, D.-Y.2    Kim, T.-Y.3
  • 24
    • 33644841004 scopus 로고    scopus 로고
    • Comparison of the performance of round and rectangular wire in small solenoids for high-field NMR
    • Li Y., Webb A.G., Saha S., Brey W.W., Zachariah C., and Edison A.S. Comparison of the performance of round and rectangular wire in small solenoids for high-field NMR. Magn. Reson. Chem. 44 (2006) 255-262
    • (2006) Magn. Reson. Chem. , vol.44 , pp. 255-262
    • Li, Y.1    Webb, A.G.2    Saha, S.3    Brey, W.W.4    Zachariah, C.5    Edison, A.S.6
  • 25
    • 45549114836 scopus 로고
    • 13C labeling in studies of metabolic regulation
    • 13C labeling in studies of metabolic regulation. Prog. NMR Spectrosc. 20 (1988) 337-383
    • (1988) Prog. NMR Spectrosc. , vol.20 , pp. 337-383
    • London, R.E.1
  • 27
    • 0347011523 scopus 로고
    • Carbon-13 nuclear magnetic resonance spectroscopy: carbon-13 chemical shifts and coupling constants
    • Mooney E.F., and Winson P.H. Carbon-13 nuclear magnetic resonance spectroscopy: carbon-13 chemical shifts and coupling constants. Annu. Rev. NMR Spectrosc. 2 (1969) 153-218
    • (1969) Annu. Rev. NMR Spectrosc. , vol.2 , pp. 153-218
    • Mooney, E.F.1    Winson, P.H.2
  • 28
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bioassays with tobacco tissue culture
    • Murashige T., and Skoog F.A. A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol. Plant 15 (1962) 473-497
    • (1962) Physiol. Plant , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.A.2
  • 29
    • 0347506028 scopus 로고    scopus 로고
    • It is all about metabolic fluxes
    • Nielsen J. It is all about metabolic fluxes. J. Bacteriol. 185 (2003) 7031-7035
    • (2003) J. Bacteriol. , vol.185 , pp. 7031-7035
    • Nielsen, J.1
  • 30
    • 26944471174 scopus 로고    scopus 로고
    • The next wave in metabolome analysis
    • Nielsen J., and Oliver S. The next wave in metabolome analysis. Trend. Biotechnol. 23 (2005) 544-546
    • (2005) Trend. Biotechnol. , vol.23 , pp. 544-546
    • Nielsen, J.1    Oliver, S.2
  • 31
    • 33846109344 scopus 로고    scopus 로고
    • Comparing and combining NMR spectroscopy and mass spectrometry in metabolomics
    • Pan Z., and Raftery D. Comparing and combining NMR spectroscopy and mass spectrometry in metabolomics. Anal. Bioanal. Chem. 387 (2007) 525-527
    • (2007) Anal. Bioanal. Chem. , vol.387 , pp. 525-527
    • Pan, Z.1    Raftery, D.2
  • 32
    • 0034680782 scopus 로고    scopus 로고
    • In vivo quantification of parallel and bidirectional fluxes in the anaplerosis of Corynebacterium glutamicum
    • Petersen S., de Graff A.A., Eggeling L., Möllney M., Wiechert W., and Sahm H. In vivo quantification of parallel and bidirectional fluxes in the anaplerosis of Corynebacterium glutamicum. J. Biol. Chem. 275 (2000) 35932-35941
    • (2000) J. Biol. Chem. , vol.275 , pp. 35932-35941
    • Petersen, S.1    de Graff, A.A.2    Eggeling, L.3    Möllney, M.4    Wiechert, W.5    Sahm, H.6
  • 35
    • 13244254993 scopus 로고    scopus 로고
    • Revealing metabolic phenotypes in plants: inputs from NMR analysis
    • Ratcliffe R.G., and Shachar-Hill Y. Revealing metabolic phenotypes in plants: inputs from NMR analysis. Biol. Rev. 80 (2005) 27-43
    • (2005) Biol. Rev. , vol.80 , pp. 27-43
    • Ratcliffe, R.G.1    Shachar-Hill, Y.2
  • 36
    • 33644853940 scopus 로고    scopus 로고
    • Measuring multiple fluxes through plant metabolic networks
    • Ratcliffe R.G., and Shachar-Hill Y. Measuring multiple fluxes through plant metabolic networks. Plant J. 45 (2006) 490-511
    • (2006) Plant J. , vol.45 , pp. 490-511
    • Ratcliffe, R.G.1    Shachar-Hill, Y.2
  • 37
    • 0033936815 scopus 로고    scopus 로고
    • NMR adventures in the metabolic labyrinth within plants
    • Roberts J.K.M. NMR adventures in the metabolic labyrinth within plants. Trends Plant Sci. 5 (2000) 30-34
    • (2000) Trends Plant Sci. , vol.5 , pp. 30-34
    • Roberts, J.K.M.1
  • 38
    • 0033979908 scopus 로고    scopus 로고
    • Strategies for metabolic flux analysis in plants using labeling
    • Roscher A., Kruger N.J., and Ratcliffe G. Strategies for metabolic flux analysis in plants using labeling. J. Biotechnol. 77 (2000) 81-102
    • (2000) J. Biotechnol. , vol.77 , pp. 81-102
    • Roscher, A.1    Kruger, N.J.2    Ratcliffe, G.3
  • 40
    • 0032753923 scopus 로고    scopus 로고
    • Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
    • Sauer U., Lasko D.R., Fiaux J., Hochuli M., Glaser R., Szyperski T., Wuthrich K., and Bailey J.E. Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J. Bacteriol. 181 (1999) 6679-6688
    • (1999) J. Bacteriol. , vol.181 , pp. 6679-6688
    • Sauer, U.1    Lasko, D.R.2    Fiaux, J.3    Hochuli, M.4    Glaser, R.5    Szyperski, T.6    Wuthrich, K.7    Bailey, J.E.8
  • 41
    • 1242306261 scopus 로고    scopus 로고
    • High-throughput phenomics: experimental methods for mapping fluxomes
    • Sauer U. High-throughput phenomics: experimental methods for mapping fluxomes. Curr. Opin. Biotechnol. 15 (2004) 58-63
    • (2004) Curr. Opin. Biotechnol. , vol.15 , pp. 58-63
    • Sauer, U.1
  • 42
    • 33846061120 scopus 로고    scopus 로고
    • Metabolic networks in motion: 13C-based flux analysis
    • Sauer U. Metabolic networks in motion: 13C-based flux analysis. Mol. Syst. Biol. 62 (2006) 1-10
    • (2006) Mol. Syst. Biol. , vol.62 , pp. 1-10
    • Sauer, U.1
  • 43
    • 0032838693 scopus 로고    scopus 로고
    • Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models
    • Schmidt K., Nielsen J., and Villadsen J. Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models. J. Biotechnol. 71 (1999) 175-190
    • (1999) J. Biotechnol. , vol.71 , pp. 175-190
    • Schmidt, K.1    Nielsen, J.2    Villadsen, J.3
  • 45
    • 0029146299 scopus 로고
    • 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism
    • 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. Eur J. Biochem. 232 (1995) 433-448
    • (1995) Eur J. Biochem. , vol.232 , pp. 433-448
    • Szyperski, T.1
  • 47
    • 33846912964 scopus 로고    scopus 로고
    • Tang, Y.J., Hwang, J.S., Wemmer, D.E., Keasling, J.D., 2007. The Shewanella oneidensis MR-1 fluxome under various oxygen conditions. Appl. Env. Microbiol., in press.
  • 48
    • 34547123115 scopus 로고    scopus 로고
    • Tian, C.J., Chikayama, E., Tsuboi, Y., Kuromori, T., Shinozaki, K., Kikuchi, J., Hirayama, T., 2007. Top-down phenomics of Arabidopsis thaliana -One and two-dimensional NMR metabolic profiling and transcriptome analysis of albino mutants. J. Biol. Chem., in press.
  • 50
    • 33644551538 scopus 로고    scopus 로고
    • Integrating metabolomics into systems biology framework to exploit metabolic complexity: strategies and applications in microorganisms
    • Wang Q.-Z., Wu C.-Y., Chen T., Chen X., and Zhao X.-M. Integrating metabolomics into systems biology framework to exploit metabolic complexity: strategies and applications in microorganisms. Appl. Microbiol. Biotech. 70 (2006) 151-161
    • (2006) Appl. Microbiol. Biotech. , vol.70 , pp. 151-161
    • Wang, Q.-Z.1    Wu, C.-Y.2    Chen, T.3    Chen, X.4    Zhao, X.-M.5
  • 52
    • 0036189810 scopus 로고    scopus 로고
    • Quantitative analysis of intracellular metabolic fluxes using GC-MS and two-dimensional NMR spectroscopy
    • Yang C., Hua Q., and Shimizu K. Quantitative analysis of intracellular metabolic fluxes using GC-MS and two-dimensional NMR spectroscopy. J. Biosci. Bioeng. 93 (2002) 78-87
    • (2002) J. Biosci. Bioeng. , vol.93 , pp. 78-87
    • Yang, C.1    Hua, Q.2    Shimizu, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.