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Volumn 100, Issue 4, 2005, Pages 347-354

Plant metabolomics: Potential for practical operation

Author keywords

Chemometrics; Functional genomics; Genomics; Informatics; Mass spectrometry; Metabolome; Metabolomics; Proteomics; Transcriptomics

Indexed keywords

PERTURBATION TECHNIQUES; PLANTS (BOTANY);

EID: 31844447341     PISSN: 13891723     EISSN: None     Source Type: Journal    
DOI: 10.1263/jbb.100.347     Document Type: Article
Times cited : (153)

References (53)
  • 1
    • 1942502343 scopus 로고    scopus 로고
    • Plant bioinformatics: From genome to phenome
    • Edwards D., Batley J. Plant bioinformatics: from genome to phenome Trends Biotechnol. 22 2004 232 237
    • (2004) Trends Biotechnol. , vol.22 , pp. 232-237
    • Edwards, D.1    Batley, J.2
  • 2
    • 0142040405 scopus 로고    scopus 로고
    • Metabolomics in systems biology
    • Weckwerth W. Metabolomics in systems biology Annu. Rev. Plant Biol. 54 2003 669 689
    • (2003) Annu. Rev. Plant Biol. , vol.54 , pp. 669-689
    • Weckwerth, W.1
  • 3
    • 0037371971 scopus 로고    scopus 로고
    • Phytochemistry meets genome analysis, and beyond
    • Dixon R.A., Strack D. Phytochemistry meets genome analysis, and beyond Phytochemistry 62 2003 815 816
    • (2003) Phytochemistry , vol.62 , pp. 815-816
    • Dixon, R.A.1    Strack, D.2
  • 4
    • 0036007687 scopus 로고    scopus 로고
    • Metabolomics - The link between genotypes and phenotypes
    • Fiehn O. Metabolomics - the link between genotypes and phenotypes Plant Mol. Biol. 48 2002 155 171
    • (2002) Plant Mol. Biol. , vol.48 , pp. 155-171
    • Fiehn, O.1
  • 5
    • 1542351248 scopus 로고    scopus 로고
    • Metabolite profiling as an aid to metabolic engineering in plants
    • Trethewey R.N. Metabolite profiling as an aid to metabolic engineering in plants Curr. Opin. Plant Biol. 7 2004 196 201
    • (2004) Curr. Opin. Plant Biol. , vol.7 , pp. 196-201
    • Trethewey, R.N.1
  • 6
    • 31844453257 scopus 로고    scopus 로고
    • Industrial metabolic profiling
    • Trethewey R.N., Fukusaki E. Industrial metabolic profiling Bio Indstry 21 2004 41 46 (in Japanese)
    • (2004) Bio Indstry , vol.21 , pp. 41-46
    • Trethewey, R.N.1    Fukusaki, E.2
  • 7
    • 0346121816 scopus 로고    scopus 로고
    • A facile transformation of Arabidopsis thaliana using ceramic supported propagation system
    • Fukusaki E., Ikeda T., Suzumura D., Akio K. A facile transformation of Arabidopsis thaliana using ceramic supported propagation system J. Biosci. Bioeng. 96 2003 503 505
    • (2003) J. Biosci. Bioeng. , vol.96 , pp. 503-505
    • Fukusaki, E.1    Ikeda, T.2    Suzumura, D.3    Akio, K.4
  • 8
    • 0034254574 scopus 로고    scopus 로고
    • Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry
    • Fiehn O., Kopka J., Trethewey R.N., Willmitzer L. Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry Anal. Chem. 72 2000 3573 3580
    • (2000) Anal. Chem. , vol.72 , pp. 3573-3580
    • Fiehn, O.1    Kopka, J.2    Trethewey, R.N.3    Willmitzer, L.4
  • 10
    • 0037330622 scopus 로고    scopus 로고
    • Global metabolite analysis: The influence of extraction methodology on metabolome profiles of Escherichia coli
    • Maharjan R.P., Ferenci T. Global metabolite analysis: the influence of extraction methodology on metabolome profiles of Escherichia coli Anal. Biochem. 313 2003 145 154
    • (2003) Anal. Biochem. , vol.313 , pp. 145-154
    • Maharjan, R.P.1    Ferenci, T.2
  • 12
    • 0037097063 scopus 로고    scopus 로고
    • Ion suppression effects in liquid chromatography: Electrospray-ioniztion transport-region collision induced dissociation mass spectrometry with different serum extraction methods for systematic toxicological analysis with mass sectra libraries
    • Mueller C., Schaefer P., Stoertzel M., Vogt S., Weinmann W. Ion suppression effects in liquid chromatography: electrospray-ioniztion transport-region collision induced dissociation mass spectrometry with different serum extraction methods for systematic toxicological analysis with mass sectra libraries J. Chromatogr. B 773 2002 47 52
    • (2002) J. Chromatogr. B , vol.773 , pp. 47-52
    • Mueller, C.1    Schaefer, P.2    Stoertzel, M.3    Vogt, S.4    Weinmann, W.5
  • 14
    • 0034789979 scopus 로고    scopus 로고
    • Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
    • Han D.K., Eng J., Zhou H., Aebersold R. Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry Nat. Biotechnol. 19 2001 9469 9451
    • (2001) Nat. Biotechnol. , vol.19 , pp. 9469
    • Han, D.K.1    Eng, J.2    Zhou, H.3    Aebersold, R.4
  • 15
    • 0035499083 scopus 로고    scopus 로고
    • Fractionation of isotopically labeled peptides in quantitative proteomics
    • Zhang R., Sioma C.S., Wang S., Regnier F.E. Fractionation of isotopically labeled peptides in quantitative proteomics Anal. Chem. 73 2001 5142 5149
    • (2001) Anal. Chem. , vol.73 , pp. 5142-5149
    • Zhang, R.1    Sioma, C.S.2    Wang, S.3    Regnier, F.E.4
  • 16
    • 14644406234 scopus 로고    scopus 로고
    • An isotope effect on the comparative quantification of flavonoids by means of methylation-based stable isotope dilution coupled with capillary liquid chromatograph/mass spectrometry
    • Fukusaki E.I., Harada K., Bamba T., Kobayashi A. An isotope effect on the comparative quantification of flavonoids by means of methylation-based stable isotope dilution coupled with capillary liquid chromatograph/mass spectrometry J. Biosci. Bioeng. 99 2005 75 77
    • (2005) J. Biosci. Bioeng. , vol.99 , pp. 75-77
    • Fukusaki, E.I.1    Harada, K.2    Bamba, T.3    Kobayashi, A.4
  • 18
    • 11144324238 scopus 로고    scopus 로고
    • Quantitative analysis of the microbial metabolome by isotope dilution mass spectrometry using uniformly 13C-labeled cell extracts as internal standards
    • Wu L., Mashego M.R., van Dam J.C., Proell A.M., Vinke J.L., Ras C., van Winden W.A., van Gulik W.M., Heijnen J.J. Quantitative analysis of the microbial metabolome by isotope dilution mass spectrometry using uniformly 13C-labeled cell extracts as internal standards Anal. Biochem. 336 2005 1641 1671
    • (2005) Anal. Biochem. , vol.336 , pp. 1641-1671
    • Wu, L.1    Mashego, M.R.2    Van Dam, J.C.3    Proell, A.M.4    Vinke, J.L.5    Ras, C.6    Van Winden, W.A.7    Van Gulik, W.M.8    Heijnen, J.J.9
  • 22
    • 1842435969 scopus 로고    scopus 로고
    • Rapid and high-resolution analysis of geometric polyprenol homologues by connected octadecylsilylated monolithic silica columns in high-performance liquid chromatography
    • Bamba T., Fukusaki E., Nakazawa Y., Kobayashi A. Rapid and high-resolution analysis of geometric polyprenol homologues by connected octadecylsilylated monolithic silica columns in high-performance liquid chromatography J. Sep. Sci. 27 2004 293 296
    • (2004) J. Sep. Sci. , vol.27 , pp. 293-296
    • Bamba, T.1    Fukusaki, E.2    Nakazawa, Y.3    Kobayashi, A.4
  • 23
    • 0345168159 scopus 로고    scopus 로고
    • Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics
    • Tolstikov V.V., Lommen A., Nakanishi K., Tanaka N., Fiehn O. Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics Anal. Chem. 75 2003 6737 6740
    • (2003) Anal. Chem. , vol.75 , pp. 6737-6740
    • Tolstikov, V.V.1    Lommen, A.2    Nakanishi, K.3    Tanaka, N.4    Fiehn, O.5
  • 25
    • 1842585612 scopus 로고    scopus 로고
    • Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins
    • Wienkoop S., Glinski M., Tanaka N., Tolstikov V., Fiehn O., Weckwerth W. Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins Rapid Commun. Mass Spectrom. 18 2004 643 650
    • (2004) Rapid Commun. Mass Spectrom. , vol.18 , pp. 643-650
    • Wienkoop, S.1    Glinski, M.2    Tanaka, N.3    Tolstikov, V.4    Fiehn, O.5    Weckwerth, W.6
  • 27
    • 0038243828 scopus 로고    scopus 로고
    • Analysis of long-chain polyprenols using supercritical fluid chromatography and matrix-assisted laser desorption ionization time-of-flight mass spectrometry
    • Bamba T., Fukusaki E., Nakazawa Y., Sato H., Ute K., Kitayama T., Kobayashi A. Analysis of long-chain polyprenols using supercritical fluid chromatography and matrix-assisted laser desorption ionization time-of-flight mass spectrometry J. Chromatogr. A 995 2003 203 207
    • (2003) J. Chromatogr. a , vol.995 , pp. 203-207
    • Bamba, T.1    Fukusaki, E.2    Nakazawa, Y.3    Sato, H.4    Ute, K.5    Kitayama, T.6    Kobayashi, A.7
  • 28
    • 0032991929 scopus 로고    scopus 로고
    • Deconvolution gas chromatography/mass spectrometry of urinary organic acids - Potential for pattern recognition and automated identification of metabolic disorders
    • Halket J.M., Przyborowska A., Stein S.E., Mallard W.G., Down S., Chalmers R.A. Deconvolution gas chromatography/mass spectrometry of urinary organic acids - potential for pattern recognition and automated identification of metabolic disorders Rapid Commun. Mass Spectrom. 13 1999 279 284
    • (1999) Rapid Commun. Mass Spectrom. , vol.13 , pp. 279-284
    • Halket, J.M.1    Przyborowska, A.2    Stein, S.E.3    Mallard, W.G.4    Down, S.5    Chalmers, R.A.6
  • 31
    • 0037371851 scopus 로고    scopus 로고
    • Metabolomic classifies pathways affected by bioactive compouds. Artificial neural network classification of NMR spectra of plant extracts
    • Ott K.-H., Aranibar N., Singh B., Stockton G.W. Metabolomic classifies pathways affected by bioactive compouds. Artificial neural network classification of NMR spectra of plant extracts Phytochemistry 62 2003 971 985
    • (2003) Phytochemistry , vol.62 , pp. 971-985
    • Ott, K.-H.1    Aranibar, N.2    Singh, B.3    Stockton, G.W.4
  • 32
    • 0037371977 scopus 로고    scopus 로고
    • 1H NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana
    • 1H NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana Phytochemistry 62 2003 949 957
    • (2003) Phytochemistry , vol.62 , pp. 949-957
    • Ward, J.L.1    Harris, C.2    Lewis, J.3    Beale, M.H.4
  • 34
    • 0142138236 scopus 로고    scopus 로고
    • Metabonomics: NMR spectroscopy and pattern recognition analysis of body fluids and tissues for characterisation of xenobiotic toxicity and disease diagnosis
    • Griffin J.L. Metabonomics: NMR spectroscopy and pattern recognition analysis of body fluids and tissues for characterisation of xenobiotic toxicity and disease diagnosis Curr. Opin. Chem. Biol. 7 2003 648 654
    • (2003) Curr. Opin. Chem. Biol. , vol.7 , pp. 648-654
    • Griffin, J.L.1
  • 35
    • 0347359145 scopus 로고    scopus 로고
    • Diffusion ordered NMR spectroscopy: Principles and applications
    • Johnson C.S. Jr Diffusion ordered NMR spectroscopy: principles and applications Prog. NMR Spectrosc. 34 1999 203 255
    • (1999) Prog. NMR Spectrosc. , vol.34 , pp. 203-255
    • Johnson, C.S.1    Jr2
  • 38
    • 0036942532 scopus 로고    scopus 로고
    • In-situ chemical analyses of trans-polyisoprene by histochemical staining and Fourier transform infrared microspectroscopy in a rubber-producing plant, Eucommia ulmoides
    • Bamba T., Fukusaki E., Nakazawa Y., Kobayashi A. In-situ chemical analyses of trans-polyisoprene by histochemical staining and Fourier transform infrared microspectroscopy in a rubber-producing plant, Eucommia ulmoides Oliver. Planta 215 2002 934 939
    • (2002) Oliver. Planta , vol.215 , pp. 934-939
    • Bamba, T.1    Fukusaki, E.2    Nakazawa, Y.3    Kobayashi, A.4
  • 41
    • 0020068152 scopus 로고
    • Self-organized formation of topologically correct feature maps
    • Kohonen T. Self-organized formation of topologically correct feature maps Biol. Cybern. 43 1982 59 69
    • (1982) Biol. Cybern. , vol.43 , pp. 59-69
    • Kohonen, T.1
  • 42
    • 0025489075 scopus 로고
    • The self-organizing map
    • Kohonen T. The self-organizing map Proc. IEEE 78 1990 1464 1480
    • (1990) Proc. IEEE , vol.78 , pp. 1464-1480
    • Kohonen, T.1
  • 44
    • 0035802405 scopus 로고    scopus 로고
    • Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): Characterization of horizontally transferred genes with emphasis on the E. coli O157 genome
    • Kanaya S., Kinouchi M., Abe T., Kudo Y., Yamada Y., Nishi T., Mori H., Ikemura T. Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome Gene 276 2001 89 99
    • (2001) Gene , vol.276 , pp. 89-99
    • Kanaya, S.1    Kinouchi, M.2    Abe, T.3    Kudo, Y.4    Yamada, Y.5    Nishi, T.6    Mori, H.7    Ikemura, T.8
  • 45
    • 14744291867 scopus 로고    scopus 로고
    • A shotgun tandem mass spectrometric analysis of phospholipids with normal-phase and/or reverse-phase liquid chromatography/electrospray ionization mass spectrometry
    • Houjou T., Yamatani K., Imagawa M., Shimizu T., Taguchi R. A shotgun tandem mass spectrometric analysis of phospholipids with normal-phase and/or reverse-phase liquid chromatography/electrospray ionization mass spectrometry Rapid Commun. Mass Spectrom. 19 2005 654 666
    • (2005) Rapid Commun. Mass Spectrom. , vol.19 , pp. 654-666
    • Houjou, T.1    Yamatani, K.2    Imagawa, M.3    Shimizu, T.4    Taguchi, R.5
  • 46
    • 21744442925 scopus 로고    scopus 로고
    • Mediator-lipidomics: Databases and search algorithms for PUFA-derived mediators
    • Lu Y., Hong S., Tjonahen E., Serhan C.N. Mediator-lipidomics: databases and search algorithms for PUFA-derived mediators J. Lipid Res. 46 2005 790 802
    • (2005) J. Lipid Res. , vol.46 , pp. 790-802
    • Lu, Y.1    Hong, S.2    Tjonahen, E.3    Serhan, C.N.4
  • 47
    • 6944227967 scopus 로고    scopus 로고
    • Systems for lipidomics: Metabolomics focused on lipids
    • Taguchi R. Systems for lipidomics: metabolomics focused on lipids Tanpakushitsu Kakusan Koso 49 2004 1911 1916 in Japanese
    • (2004) Tanpakushitsu Kakusan Koso , vol.49 , pp. 1911-1916
    • Taguchi, R.1
  • 48
    • 0037382956 scopus 로고    scopus 로고
    • Oligosaccharide microarrays for glycomics
    • Hirabayashi J. Oligosaccharide microarrays for glycomics Trends Biotechnol. 21 2003 141 143
    • (2003) Trends Biotechnol. , vol.21 , pp. 141-143
    • Hirabayashi, J.1
  • 49
    • 5744226307 scopus 로고    scopus 로고
    • Tools for glycomics: Mapping interactions of carbohydrates in biological systems
    • Ratner D.M., Adams E.W., Disney M.D., Seeberger P.H. Tools for glycomics: mapping interactions of carbohydrates in biological systems Chembiochem 5 2004 1375 1383
    • (2004) Chembiochem , vol.5 , pp. 1375-1383
    • Ratner, D.M.1    Adams, E.W.2    Disney, M.D.3    Seeberger, P.H.4
  • 51
    • 0035431410 scopus 로고    scopus 로고
    • Peptidome: The fact-database for endogenous peptides
    • Minamino N. Peptidome: the fact-database for endogenous peptides Tanpakushitsu Kakusan Koso 46 2001 1510 1517 in Japanese
    • (2001) Tanpakushitsu Kakusan Koso , vol.46 , pp. 1510-1517
    • Minamino, N.1
  • 52
    • 3142770849 scopus 로고    scopus 로고
    • Experimental RNomics: A global approach to identifying small nuclear RNAs and their targets in different model organisms
    • Huttenhofer A., Cavaille J., Bachellerie J.P. Experimental RNomics: a global approach to identifying small nuclear RNAs and their targets in different model organisms Methods Mol. Biol. 265 2004 409 428
    • (2004) Methods Mol. Biol. , vol.265 , pp. 409-428
    • Huttenhofer, A.1    Cavaille, J.2    Bachellerie, J.P.3


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