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A. Goossens, S.T. Häkkinen, I. Laakso, T. Seppänen-Laakso, S. Biondi, V. De Sutter, F. Lammertyn, A.M. Nuutila, H. Soderlund, and M. Zabeau A functional genomics approach toward the understanding of secondary metabolism in plant cells Proc Natl Acad Sci USA 100 2003 8595 8600 A cDNA-AFLP technology was applied to the high-throughput transcript profiling of methyljasmonate- treated tobacco BY-2 cells. The correlation of transcripts with the accumulation patterns of secondary metabolites allowed the identification of putative genes responsible for the inducible accumulation of secondary products. The method is generally applicable for any non-model or exotic plants for which genome information is unavailable. Furthermore, this approach provides quantitative data on gene expression.
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(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8595-8600
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Goossens, A.1
Häkkinen, S.T.2
Laakso, I.3
Seppänen-Laakso, T.4
Biondi, S.5
De Sutter, V.6
Lammertyn, F.7
Nuutila, A.M.8
Soderlund, H.9
Zabeau, M.10
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50
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12944267048
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Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays
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A. Aharoni, Keizer LCP, H.J. Bouwmeester, Z. Sun, M. Alvarez-Huerta, H.A. Verhoven, J. Blaas, A.M.M.L. van Houwelingen, R.C.H. De Vos, and H. van der Voet Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays Plant Cell 12 2000 647 661
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(2000)
Plant Cell
, vol.12
, pp. 647-661
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Aharoni, A.1
Keizer, L.C.P.2
Bouwmeester, H.J.3
Sun, Z.4
Alvarez-Huerta, M.5
Verhoven, H.A.6
Blaas, J.7
Van Houwelingen, A.M.M.L.8
De Vos, R.C.H.9
Van Der Voet, H.10
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51
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0036801491
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Rose scent: Genomics approach to discovering novel floral fragrance-related genes
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I. Guterman, M. Shalit, N. Menda, D. Piestun, M. Dafy-Yelin, G. Shalev, E. Bar, O. Davydov, M. Ovadis, and M. Emanuel Rose scent: genomics approach to discovering novel floral fragrance-related genes Plant Cell 14 2002 2325 2338 DNA chips were prepared from the expressed sequence tag information of rose and used for the expression profiling of transcripts in rose petal from different cultivars. Combined with a detailed chemical analysis of volatile compounds this work led to the discovery of novel flower scent-related genes.
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(2002)
Plant Cell
, vol.14
, pp. 2325-2338
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Guterman, I.1
Shalit, M.2
Menda, N.3
Piestun, D.4
Dafy-Yelin, M.5
Shalev, G.6
Bar, E.7
Davydov, O.8
Ovadis, M.9
Emanuel, M.10
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52
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4444297148
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Combined transcript and metabolite analysis reveals genes involved in spider mint induced volatile formation in cucumber plants
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•], DNA microarray analysis was combined with the chemical analysis of volatile metabolites in cucumber. Insight was gained into the involvement of the studied genes in the production of volatile compounds.
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(2004)
Plant Physiol
, vol.135
, pp. 2012-2024
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Mercke, P.1
Kappers, I.F.2
Verstappen, F.W.A.3
Vorst, O.4
Dicke, M.5
Bouwmeester, H.J.6
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53
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0042421772
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Activation tagging in tomato identifies a transcriptional regulator of anthocyanin biosynthesis, modification, and transport
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H. Mathews, S.K. Clendennen, C.G. Caldwell, X.L. Liu, K. Connors, N. Matheis, D.K. Schuster, D.J. Menasco, W. Wagoner, J. Lightner, and D.R. Wagner Activation tagging in tomato identifies a transcriptional regulator of anthocyanin biosynthesis, modification, and transport Plant Cell 15 2003 1689 1703
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(2003)
Plant Cell
, vol.15
, pp. 1689-1703
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Mathews, H.1
Clendennen, S.K.2
Caldwell, C.G.3
Liu, X.L.4
Connors, K.5
Matheis, N.6
Schuster, D.K.7
Menasco, D.J.8
Wagoner, W.9
Lightner, J.10
Wagner, D.R.11
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54
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0037899020
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Recent advances in the biosynthesis of and accumulation of anthocyanins
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K. Springob, J. Nakajima, M. Yamazaki, and K. Saito Recent advances in the biosynthesis of and accumulation of anthocyanins Nat Prod Rep 20 2003 288 303
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(2003)
Nat Prod Rep
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, pp. 288-303
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Springob, K.1
Nakajima, J.2
Yamazaki, M.3
Saito, K.4
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55
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0036536289
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Engineering secondary metabolite production in plants
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R. Verpoorte, and J. Memelink Engineering secondary metabolite production in plants Curr Opin Biotechnol 13 2002 181 187
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(2002)
Curr Opin Biotechnol
, vol.13
, pp. 181-187
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Verpoorte, R.1
Memelink, J.2
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56
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11144352099
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RNAi-mediated replacement of morphine with the nonnarcotic alkaloid reticuline in opium poppy
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R.S. Allen, A.G. Millgate, J.A. Chitty, J. Thisleton, J.A.C. Miller, A.J. Fist, W.L. Gerlach, and P.J. Larkin RNAi-mediated replacement of morphine with the nonnarcotic alkaloid reticuline in opium poppy Nat Biotechnol 22 2004 1559 1566
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(2004)
Nat Biotechnol
, vol.22
, pp. 1559-1566
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Allen, R.S.1
Millgate, A.G.2
Chitty, J.A.3
Thisleton, J.4
Miller, J.A.C.5
Fist, A.J.6
Gerlach, W.L.7
Larkin, P.J.8
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58
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0242574984
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In silico atomic tracing by substrate-product relationships in Escherichia coli intermediary metabolism
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M. Arita In silico atomic tracing by substrate-product relationships in Escherichia coli intermediary metabolism Genome Res 13 2003 2455 2466 A report on a specific software that allows in silico tracer experiments to be carried out at the atomic level for all possible pathways.
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(2003)
Genome Res
, vol.13
, pp. 2455-2466
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Arita, M.1
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59
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0842264048
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13C]glucose
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13C]glucose Plant Physiol 134 2004 161 170
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(2004)
Plant Physiol
, vol.134
, pp. 161-170
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Yamazaki, Y.1
Kitajima, M.2
Arita, M.3
Takayama, H.4
Sudo, H.5
Yamazaki, M.6
Aimi, N.7
Saito, K.8
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60
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20144376484
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Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula
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H. Suzuki, M.S. Srinivasa Reddy, M. Naoumkina, N. Aziz, G.D. May, D.V. Huhman, L.W. Sumner, J.W. Blount, P. Mendes, and R.A. Dixon Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula Planta 2005 DOI: 10.1007/s00425-004-1387-2
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(2005)
Planta
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Suzuki, H.1
Srinivasa Reddy, M.S.2
Naoumkina, M.3
Aziz, N.4
May, G.D.5
Huhman, D.V.6
Sumner, L.W.7
Blount, J.W.8
Mendes, P.9
Dixon, R.A.10
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