Nontargeted metabolome analysis by use of Fourier Transform Ion Cyclotron Mass Spectrometry

OMICS A Journal of Integrative Biology

Volumn 6, Issue 3, 2002, Pages 217-234

  Aharoni, Asaph ^a   De Vos, C H Ric ^a   Verhoeven, Harrie A ^a   Maliepaard, Chris A ^a   Kruppa, Gary ^b   Bino, Raoul ^a   Goodenowe, Dayan B ^c  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b BRUKER DALTONIK GMBH   (Germany)

^c Phenomenome Discoveries Inc   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHEMICAL COMPOSITION; CYCLOTRON; DNA FINGERPRINTING; FOURIER TRANSFORM ION CYCLOTRON MASS SPECTROMETRY; FOURIER TRANSFORMATION; FRUIT; GENE FUNCTION; GENE TARGETING; GENETIC ANALYSIS; GENOMICS; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; SAMPLING;

CALIBRATION; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DOWN-REGULATION; FRAGARIA; GENETIC TECHNIQUES; MODELS, BIOLOGICAL; MUTATION; PHENOTYPE; PLANT EXTRACTS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; TOBACCO; ULTRAVIOLET RAYS; UP-REGULATION;

FRAGARIA X ANANASSA; NICOTIANA TABACUM;

EID: 0036404889     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/15362310260256882     Document Type: Article

References (31)

1. Aharoni, A., and Vorst, O. (2002). DNA microarrays for functional plant genomics. Plant Mol Biol 48, 99-118.
2. Aharoni, A., Keizer, L.C.P., Bouwmeester, H.J., et al. (2000). Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays. Plant Cell 12, 647-661.
3. Aharoni, A., De Vos, C.H.R., Wein, M., et al. (2001). The strawberry FaMYB1 transcription factor suppresses anthocyanin and flavonol accumulation in transgenic tobacco. Plant J 28, 319-332.
4. Aharoni, A., Keizer, L.C.P., Van Den Broeck, H.C., et al. (2002). Novel insight into vascular, stress and auxin dependent and independent gene expression programs in strawberry, a non-climacteric fruit. Plant Physiol 129, 1019-1031.
5. Brenner, S., Johnson, M., Bridgham, J., et al. (2000). Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat Biotechnol 18, 630-634.
6. Brown, P.O., and Botstein, D. (1999). Exploring the new world of the genome with DNA microarrays. Nat Genet 21, Suppl. S, 33-37.
7. Chee M., Yang R., Hubbell E., et al. (1996). Accessing genetic information with high-density DNA arrays. Science 274, 610-614.
8. Cheng, G.W., and Breen, P.J. (1991). Activity of phenylalanine ammonia-lyase (PAL) and concentrations of anthocyanins and phenolics in developing strawberry fruit. J Am Soc Hort Sci 116, 865-869.
9. Duke, J.A. (1992). Handbook of Phytochemical Constituents of GRAS Herbs and Other Economic Plants (CRC Press, Boca Raton, FL).
10. Dutt, M.J., and Lee, K.H. (2000). Proteomic analysis. Curr Opin Biotech 11, 176-179.
11. Fiehn, O., Kopka, J., Doermann, P., et al. (2000). Metabolite profiling for plant functional genomics. Nat Biotech 18, 1157-1161.
12. Fiehn, O., Kloska, S., and Altmann, T. (2001). Integrated studies on plant biology using multiparallel techniques. Curr Opin Biotech 12, 82-86.
13. Glassbrook, N., and Ryals, J. (2001). A systematic approach to biochemical profiling. Curr Opin Plant Biol 4, 186-190.
14. Gorlach, E., and Richmond, R. (1999). Discovery of quasi-molecular ions in electrospray spectra by automated searching for simultaneous adduct mass differences. Anal Chem 71, 5557-5562.
15. Grierson, D. (1998). Manipulation of fruit ripening by genetic modification. In K Lindsey, ed, Transgenic Plant Research (Harwood Academic Publishers, Amsterdam, The Netherlands), pp 109-124.
16. Latza, S., Gansser, D., and Berger, R.G. (1996). Identification and accumulation of 1-O-trans-cinnamoyl-beta-D-glucopyranose in developing strawberry fruit (Fragaria ananassa Duch. Cv. Kent). J Agri Food Chem 44, 1367-1370.
17. Maas, J.L., Wang, S.Y., and Galletta, G.J. (1991). Evaluation of strawberry cultivars for ellagic acid content. HortScience 26, 66-68.
18. Martzen, M.R., McCraith, S.M., Spinelli, S.L., et al. (1999). A biochemical genomics approach for identifying genes by the activity of their products. Science 286, 1153-1155.
19. Moing, A., Renaud, C., Gaudillere, M., et al. (2001). Biochemical changes during fruit development of four strawberry cultivars. J Am Soc Hort Sci 126, 394-403.
20. Parinov, S., and Sundaresan, V. (2000). Functional genomics in Arabidopsis: Large-scale insertional mutagenesis complements the genome sequencing project. Curr Opin Biotech 11, 157-161.
21. Perkins Veazie, P. (1995). Growth and ripening of strawberry fruit. Hort Rev 17, 267-297.
22. Ren, B., Robert, F., Wyrick, J.J., et al. (2001). Genome-wide location and function of DNA binding proteins. Science 290, 2306-2309.
23. Roessner, U., Wagner, C., Kopka, J., et al. (2000). Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant J 23, 131-142.
24. Roessner, U., Luedemann, A., Brust, D., et al. (2001a). Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13, 11-29.
25. Roessner, U., Willmitzer, L., and Fernie, A.R. (2001b). High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems. Identification of phenocopies. Plant Physiol 127, 749-764.
26. Seymour, G.B., Taylor, J.E., and Tucker, G.A. (1993). Biochemistry of Fruit Ripening (Chapman & Hall, London), pp 454.
27. Sterner, J.L., Johnston, M.V., Nicol, G.R., et al. (2000). Signal suppression in electrospray ionization fourier transform mass spectrometry of multi-component samples. J Mass Spec 35, 385-391.
28. Trethewey, R.N., Krotzky, A.J., and Willmitzer, L. (1999). Metabolic profiling: A Rosetta stone for genomics? Curr Opin Plant Biol 2, 83-85.
29. Uetz, P., Giot, L., Cagney, G., et al. (2000). A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403, 623-627.
30. Weigel, D., Ahn, J., Blazquez, M.A., et al. (2000). Activation tagging in Arabidopsis. Plant Physiol 122, 1003-1013.
31. Winzeler, E.A., Shoemaker, D.D., Astromoff, A., et al. (1999). Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285, 901-906.