Poised for contagion: Evolutionary origins of the infectious abilities of invertebrate retroviruses

Genome Research

Volumn 10, Issue 9, 2000, Pages 1307-1318

  Malik, Harmit S ^b,d   Henikoff, Steve ^a,b   Eickbush, Thomas H ^c  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b Fred Hutchinson Cancer Research Center   (United States)

^c UNIVERSITY OF ROCHESTER   (United States)

^d NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASCARIS LUMBRICOIDES; BACULOVIRUS; BUNYAVIRUS; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; ENVELOPE GENE; INSECT; INVERTEBRATE; LONG TERMINAL REPEAT; MOLECULAR EVOLUTION; NEMATODE; NONHUMAN; OPEN READING FRAME; PHYLOGENY; PLANT; PRIORITY JOURNAL; RETROPOSON; RETROVIRUS; VIRUS INFECTION; VIRUS PATHOGENESIS;

AMINO ACID SEQUENCE; ANIMALS; BACULOVIRIDAE; DNA-BINDING PROTEINS; EVOLUTION, MOLECULAR; GENES, ENV; INSECT VIRUSES; INVERTEBRATES; MOLECULAR SEQUENCE DATA; PHLEBOVIRUS; PHYLOGENY; PROTEINS; RETROELEMENTS; RETROVIRIDAE; RETROVIRIDAE PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SPUMAVIRUS; TERMINAL REPEAT SEQUENCES; TRANS-ACTIVATORS;

ASCARIS; ASCARIS LUMBRICOIDES; CAENORHABDITIS ELEGANS; DNA VIRUSES; HERPESVIRIDAE; HEXAPODA; INSECTA; INVERTEBRATA; NEMATODA; ORTHOBUNYAVIRUS; POSIBACTERIA; RNA VIRUSES; UNIDENTIFIED BACULOVIRUS; UNIDENTIFIED RETROVIRUS; VERTEBRATA;

EID: 0033799581     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.145000     Document Type: Article

References (41)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. Combining evidence using p-values: Application to sequence homology searches
3. Pfam 3.1: 1313 multiple alignments match the majority of proteins
4. Genomic analysis of Caenorhabditis elegans reveals ancient families of retroviral-like elements
5. Human cytomegalovirus glycoproteins
6. Phylogenetic analysis supports horizontal transfer of P transposable elements
7. Systematic screening of anopheles mosquito genomes yields evidence for a major clade of pao-like retrotransposons
8. Mobilization of two retroelements, ZAM and Idefix, in a novel unstable line of Drosophila melanogaster
9. Maize stripe tenuivirus RNA2 transcripts in plant and insect hosts and analysis of pvc2, a protein similar to the Phlebovirus virion membrane glycoproteins
10. Tas, a retrotransposon from the parasitic nematode Ascaris lumbricoides
11. Gene organization and transcription of TED, a lepidopteran retrotransposon integrated within the baculovirus genome
12. Sequence analysis of the Xestia c-nigrum granulovirus genome
13. Increased coverage of protein families with the BLOCKS database servers
14. Automated construction and graphical presentation of protein blocks from unaligned sequences
15. Sequence and organization of the Spodoptera exigua multicapsid nucleopolyhedrovirus genome
16. Evidence for the recent horizontal transfer of long terminal repeat retrotransposon
17. Diverse groups of plant RNA and DNA viruses share related movement proteins that may possess chaperone-like activity
18. Sequence and analysis of the genome of a baculovirus pathogenic for Lymantria dispar
19. SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein
20. Retrotransposons and retroviruses: Analysis of the envelope gene
21. Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons
22. Ty3/Gypsy retrotransposons (Metaviridae): Evolutionary perspectives derived from genome sequencing data
23. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
24. Requirement for GP64 to drive efficient budding of Autographa californica multicapsid nucleopolyhedrovirus
25. The retrotransposon Osvaldo from Drosophila buzzatii displays all structural features of a functional retrovirus
26. Molecular biology of tenuiviruses, a remarkable group of plant viruses
27. Multiple mariner transposons in flatworms and hydras are related to those of insects
28. Prediction of protein secondary structure at better than 70% accuracy
29. The neighbor-joining method: A new method for recontructing phylogenetic trees
30. IMPALA: Matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
31. An env-like protein encoded by a Drosophila retroelement: Evidence that gypsy is an infectious retrovirus
32. Mechanism of transduction by retroviruses
33. PAUP*: Phylogenetic analysis using parsimony and other methods
34. Comparison between the viral transforming gene (src) of recovered avian sarcoma virus and its cellular homolog
35. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
36. Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/gypsy retrotransposons that encode envelope-like proteins
37. Pao, a highly divergent retrotransposable element from Bombyx mori containing long terminal repeats with tandem copies of the putative R region
38. Origin and evolution of retroelements based on their reverse transcriptase sequences