Bats with hATs: Evidence for recent DNA transposon activity in genus Myotis

Molecular Biology and Evolution

Volumn 24, Issue 3, 2007, Pages 632-639

  Ray, David A ^a   Pagan, Heidi J T ^a   Thompson, Michelle L ^a   Stevens, Richard D ^b  

^a WEST VIRGINIA UNIVERSITY   (United States)

^b LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

Chiroptera; hAT; Mobile element; Myotis; Transposon

Indexed keywords

DNA;

ARTICLE; CONSENSUS SEQUENCE; GENE ACTIVITY; GENE AMPLIFICATION; GENE INSERTION; GENETIC LINE; GENETIC MANIPULATION; GENETIC VARIABILITY; GENOME ANALYSIS; GENUS; MAMMALIAN GENETICS; MATHEMATICAL ANALYSIS; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMORPHIC LOCUS; SEQUENCE ANALYSIS; TAXON; TRANSPOSON;

ANIMALS; BASE SEQUENCE; CHIROPTERA; COMPUTATIONAL BIOLOGY; DNA TRANSPOSABLE ELEMENTS; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

CHIROPTERA; EUKARYOTA; INVERTEBRATA; MAMMALIA; MYOTIS; MYOTIS AUSTRORIPARIUS; MYOTIS LUCIFUGUS;

EID: 33847633354     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl192     Document Type: Article

References (33)

1. Ariagno D. 1984. Myotis myotis et Myotis blythi. In: Faryard A, editor. Atlas des mammiferes sauvages de la France. Paris: S.F.E.P.M., p. 68-71.
2. Bennetzen JL. 2000. Transposable element contributions to plant gene and genome evolution. Plant Mol Biol. 42:251-269.
3. Bestor TH. 2005. Transposons reanimated in mice. Cell. 122:322-325.
4. Cheng Z, Ventura M, She X, Khaitovich P, Graves T, Osoegawa K, Church D, de Jong P, Wilson RK, Pääbo S, Rocchi M, Eichler EE. 2005. A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature. 437:88-93.
5. Cheung J, Wilson MD, Zhang J, Khaja R, MacDonald JR, Heng HH, Koop BF, Scherer SW. 2003. Recent segmental and gene duplications in the mouse genome. Genome Biol. 4:R47.
6. Cordaux R, Hedges DJ, Batzer MA. 2004. Retrotransposition of Alu elements: how many sources? Trends Genet. 20:464-467.
7. Ding S, Wu X, Li G, Han M, Zhuang Y, Xu T. 2005. Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice. Cell. 122:473-483.
8. Dupuy AJ, Akagi K, Largaespada DA, Copeland NG, Jenkins NA. 2005. Mammalian mutagenesis using a highly mobile somatic Sleeping Beauty transposon system. Nature. 436:221-226.
9. Edgar RC, Myers EW. 2005. PILER: identification and classification of genomic repeats. Bioinformatics. 21 (Suppl 1):i152-i158.
10. Findley JS. 1972. Phenetic relationships among bats of the genus Myotis. Syst Zool. 21:31-52.
11. Geurts AM, Yang Y, Clark KJ, Liu G, Cui Z, Dupuy AJ, Bell JB, Largaespada DA, Hackett PB. 2003. Gene transfer into genomes of human cells by the sleeping beauty transposon system. Mol Ther. 8:108-117.
12. Hamada M, Takasaki N, Reist JD, DeCicco AL, Goto A, Okada N. 1998. Detection of the ongoing sorting of ancestrally polymorphic SINEs toward fixation or loss in populations of two species of charr during speciation. Genetics. 150:301-311.
13. Hoofer SR, Van Den Bussche RA. 2003. Molecular phylogenetics of the chiropteran family Vespertilionidae. Acta Chiropt. 5 (suppl):1-63.
14. Hua-Van A, Le Rouzic A, Maisonhaute C, Capy P. 2005. Abundance, distribution and dynamics of retrotransposable elements and transposons: similarities and differences. Cytogenet Genome Res. 110:426-440.
15. Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110:462-467.
16. Kawai K, Nikaido M, Harada M, Matsumura S, Lin LK, Wu Y, Hasegawa M, Okada N. 2002. Intra- and interfamily relationships of Vespertilionidae inferred by various molecular markers including SINE insertion data. J Mol Evol. 55:284-301.
17. Kempken F, Windhofer F. 2001. The hAT family: a versatile transposon group common to plants, fungi, animals, and man. Chromosoma. 110:1-9.
18. Kidwell MG. 1992. Horizontal transfer. Curr Opin Genet Dev. 2:868-873.
19. Kidwell MG, Lisch D. 1997. Transposable elements as sources of variation in animals and plants. Proc Natl Acad Sci USA. 94:7704-7711.
20. Kidwell MG, Lisch DR. 2001. Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution Int J Org Evolution. 55:1-24.
21. Koga A, Iida A, Kamiya M, Hayashi R, Hori H, Ishikawa Y, Tachibana A. 2003. The medaka fish Tol2 transposable element can undergo excision in human and mouse cells. J Hum Genet. 48:231-235.
22. Kumar S, Subramanian S. 2002. Mutation rates in mammalian genomes. Proc Natl Acad Sci USA. 99:803-808.
23. Lander ES, Linton LM, Birren B, et al. 2001. Initial sequencing and analysis of the human genome. Nature. 409:860-921.
24. Nowak RM. 1991. Walker's mammals of the World. Baltimore (MD): Johns Hopkins University Press.
25. Quinet GE. 1965. Myotis misonnei. chiroptere de l'Oligocene de Hoogbutsel. Bull Inst R Sci Nat Belg. 41:1-11.
26. Rozen S, Skaletsky H. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, editors. Bioinformatics Methods and Protocols: Methods in Molecular Biology. Totowa (NJ): Humana Press, pp 365-386.
27. Rubin E, Lithwick G, Levy AA. 2001. Structure and evolution of the hAT transposon superfamily. Genetics. 158:949-957.
28. Ruedi M, Mayer F. 2001. Molecular systematics of bats of the genus Myotis (Vespertilionidae) suggests deterministic ecomorphological convergences. Mol Phylogenet Evol. 21:436-448.
29. SanMiguel P, Bennetzen JL. 1998. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann Bot. 82:37-44.
30. Savage DE, Russel DE. 1983. Mammalian paleofaunas of the World. Reading (MA): Addison-Wesley.
31. Takahashi K, Terai Y, Nishida M, Okada N. 2001. Phylogenetic relationships and ancient incomplete lineage sorting among cichlid fishes in Lake Tanganyika as revealed by analysis of the insertion of retroposons. Mol Biol Evol. 18:2057-2066.
32. Tuzun E, Bailey JA, Eichler EE. 2004. Recent segmental duplications in the working draft assembly of the brown Norway rat. Genome Res. 14:493-506.
33. Waterston RH, Lindblad-Toh K, Birney E, et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature. 420:520-562.