Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements

Proceedings of the National Academy of Sciences of the United States of America

Volumn 96, Issue 14, 1999, Pages 7847-7852

  Yang, Jin ^a,b   Malik, Harmit S ^a   Eickbush, Thomas H ^a  

^a UNIVERSITY OF ROCHESTER   (United States)

^b DUKE UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENDONUCLEASE; RNA 28S;

ARTICLE; DNA BINDING; ENZYME ACTIVITY; GENE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DNA BINDING; PROTEIN DOMAIN; RETROPOSON; SEQUENCE ANALYSIS; SITE DIRECTED MUTAGENESIS;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BRACHYURA; CONSERVED SEQUENCE; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA PRIMERS; INSECTS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; POINT MUTATION; RECOMBINANT PROTEINS; REPETITIVE SEQUENCES, NUCLEIC ACID; RETROELEMENTS; RNA, RIBOSOMAL, 28S; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0033529244     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.96.14.7847     Document Type: Article

References (41)

1. Eickbush, T. H. (1994) in The Evolutionary Biology of Viruses, ed. Morse, S. S. (Raven, New York), pp. 121-157.
2. Whitcomb, J. M. & Hughes, S. H. (1992) Annu. Rev. Cell Biol. 8, 275-306.
3. Mizuuchi, K. (1992) Annu. Rev. Biochem. 61, 1011-1051.
4. Luan, D. D., Korman, M. H., Jakubczak, J. L. & Eickbush, T. H. (1993) Cell 72, 595-605.
5. Martin, F., Maranon, C., Olivares, M., Alonso, C. & Lopez, M. C. (1995) J. Mol. Biol. 247, 49-59.
6. Feng, Q., Moran, J. V., Kazazian, H. H. & Boeke, J. D. (1996) Cell 87, 905-916.
7. Feng, Q., Schumann, G. & Boeke, J. D. (1998) Proc. Natl. Acad. Sci. USA 95, 2083-2088.
8. Malik, H. S., Burke, W. D. & Eickbush, T. H. (1999) Mol. Biol. Evol. 16, 793-805.
9. Burke, W. D., Malik, H. S., Lathe, W. C. & Eickbush, T. H. (1998) Nature (London) 239, 141-142.
10. Burke, W. D., Müller, F. & Eickbush, T. H. (1995) Nucleic Acids Res. 23, 4628-4634.
11. Xiong, Y. & Eickbush, T. H. (1993) Nucleic Acids Res. 21, 1318.
12. Aksoy, S., Williams, S., Chang, S. & Richards, F. F. (1990) Nucleic Acids Res. 18, 785-792.
13. Gabriel, A., Yen, T. J., Schwartz, D. C., Smith, C. L., Boeke, J. D., Sollner-Webb, B. & Cleveland, D. W. (1990) Mol. Cell. Biol. 10, 615-624.
14. Villanueva, M. S., Williams, S. P., Beard, C. B., Richards, F. F. & Aksoy, S. (1991) Mol. Cell. Biol. 11, 6139-6148.
15. Teng, S.-H., Wang, S. X. & Gabriel, M. (1995) Nucleic Acids Res. 23, 2929-2936.
16. Xiong, Y. & Eickbush T. H. (1988) Cell 55, 235-246.
17. Luan, D. D. & Eickbush, T. H. (1995) Mol. Cell. Biol. 15, 3882-3891.
18. Yang, J. & Eickbush, T. H. (1998) Mol. Cell. Biol. 18, 3455-3465.
19. Burke, W. D., Malik, H. S., Jones, J. P. & Eickbush, T. H. (1999) Mol. Biol. Evol. 16, 502-511.
20. Berg, J. M. & Shi, Y. (1996) Science 271, 1081-1085.
21. Ogata, K., Morikawa, S., Nakamura, H., Sekikawa, A., Inoue, T., Kanai, H., Sarai, A., Ishii, S. & Nishimura, Y. (1994) Cell 79, 639-648.
22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997) Nucleic Acids Res. 25, 4876-4882.
23. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
24. Winkler, F. K., Banner, D. W., Oefner, C., Tsernoglou, D., Brown, R. S., Heathman, S. P., Bryan, R. K., Martin, P. D., Petratos, K. & Wilson, K. S. (1993) EMBO J. 12, 1781-1795.
25. Wah, D. A., Hirsch, J. A., Dorner, L. F., Schildkraut, I. & Aggarwal, A. K. (1997) Nature (London) 388, 97-100.
26. Selent, U., Rüter, T., Kohler, E., Liedtke, M., Thielking, V., Alves, J., Oelgeschlager, T., Wolfes, H., Peters, F. & Pingoud, A. (1992) Biochemistry 31, 4808-4815.
27. Waugh, D. S. & Sauer, R. T. (1993) Proc. Natl. Acad. Sci. USA 90, 9596-9600.
28. Larder, B. A., Purifoy, D. J. M., Powell, K. L. & Darby, G. (1987) Nature (London) 327, 716-717.
29. Mathias, S. L., Scott, A. F., Kazazian, H. H., Boeke, J. D. & Gabriel, A. (1991) Science 254, 1808-1810.
30. Moran, J. V., Holmes, S. E., Naas, T. P., DeBerardinis, R. J., Boeke, J. D. & Kazazian, H. H. (1996) Cell 87, 917-927.
31. Wah, D. A., Bitinaite, J., Schildkraut, I. & Aggarwal, A. K. (1998) Proc. Natl. Acad. Sci. USA 95, 10564-10569.
32. Bitinaite, J., Wah, D. A., Aggarwal, A. K. & Schildkraut, I. (1998) Proc. Natl. Acad. Sci. USA 95, 10570-10575.
33. Xiong, Y. & Eickbush, T. H. (1990) EMBO J. 9, 3353-3362.
34. Zimmerly, S., Guo, H., Perlman, P. S. & Lambowitz, A. M. (1995) Cell 82, 1-10.
35. Cousineau, B., Smith, D., Lawrence-Cavanagh, S., Mueller, J. E., Yang, J., Mills, D., Manias, D., Dunny, G., Lambowitz, A. M. & Belfort, M. (1998) Cell 94, 451-462.
36. Shub, D. A., Goodrich-Blair, H. & Eddy, S. R. (1994) Trends Biochem. Sci. 19, 402-406.
37. Gorbalenya, A. E. (1994) Protein Sci. 3, 1117-1120.
38. Eskes, R., Yang, J., Lambowitz, A. M. & Perlman, P. S. (1997) Cell 88, 865-874.
39. Garrett, J. E., Knutzon, D. S. & Carroll, D. (1989) Mol. Cell. Biol. 9, 3018-3027.
40. Higashiyama, T., Noutoshi, Y., Fujie, M. & Yamada, T. (1997) EMBO J. 16, 3715-3723.
41. Mohr, G., Perlman, P. S. & Lambowitz, A. M. (1993) Nucleic Acids Res. 21, 4991-4997.