-
1
-
-
0015786441
-
Chromatin sub-structure. The digestion of chromatin DNA at regularly spaced sites by a nuclear deoxyribonuclease
-
Hewish DR, &, Burgoyne LA, (1973) Chromatin sub-structure. The digestion of chromatin DNA at regularly spaced sites by a nuclear deoxyribonuclease. Biochem Biophys Res Commun 52, 504-510.
-
(1973)
Biochem Biophys Res Commun
, vol.52
, pp. 504-510
-
-
Hewish, D.R.1
Burgoyne, L.A.2
-
2
-
-
0016753515
-
Histones H2a, H2b, H3, and H4 form a tetrameric complex in solutions of high salt
-
Weintraub H, Palter K, &, Van Lente F, (1975) Histones H2a, H2b, H3, and H4 form a tetrameric complex in solutions of high salt. Cell 6, 85-110.
-
(1975)
Cell
, vol.6
, pp. 85-110
-
-
Weintraub, H.1
Palter, K.2
Van Lente, F.3
-
3
-
-
0015337558
-
Separation and analysis of histone subfractions differing in their degree of acetylation: Some correlations with genetic activity in development
-
Wangh L, Ruiz-Carrillo A, &, Allfrey VG, (1972) Separation and analysis of histone subfractions differing in their degree of acetylation: some correlations with genetic activity in development. Arch Biochem Biophys 150, 44-56.
-
(1972)
Arch Biochem Biophys
, vol.150
, pp. 44-56
-
-
Wangh, L.1
Ruiz-Carrillo, A.2
Allfrey, V.G.3
-
5
-
-
0017142124
-
Chromosomal subunits in active genes have an altered conformation
-
Weintraub H, &, Groudine M, (1976) Chromosomal subunits in active genes have an altered conformation. Science 193, 848-856.
-
(1976)
Science
, vol.193
, pp. 848-856
-
-
Weintraub, H.1
Groudine, M.2
-
7
-
-
0018867216
-
Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I
-
Stalder J, Larsen A, Engel JD, Dolan M, Groudine M, &, Weintraub H, (1980) Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I. Cell 20, 451-460. (Pubitemid 10117761)
-
(1980)
Cell
, vol.20
, Issue.2
, pp. 451-460
-
-
Stalder, J.1
Larsen, A.2
Engel, J.D.3
-
8
-
-
0018118958
-
SV40 viral minichromosome: preferential exposure of the origin of replication as probed by restriction endonucleases
-
Varshavsky AJ, Sundin OH, &, Bohn MJ, (1978) SV40 viral minichromosome: preferential exposure of the origin of replication as probed by restriction endonucleases. Nucleic Acids Res 5, 3469-3477. (Pubitemid 9031325)
-
(1978)
Nucleic Acids Research
, vol.5
, Issue.10
, pp. 3469-3477
-
-
Varshavsky, A.J.1
Sundin, O.H.2
Bohn, M.J.3
-
9
-
-
0019303186
-
The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I
-
DOI 10.1038/286854a0
-
Wu C, (1980) The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I. Nature 286, 854-860. (Pubitemid 10010150)
-
(1980)
Nature
, vol.286
, Issue.5776
, pp. 854-860
-
-
Wu, C.1
-
10
-
-
0018851189
-
Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA
-
Saragosti S, Moyne G, &, Yaniv M, (1980) Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA. Cell 20, 65-73. (Pubitemid 10117301)
-
(1980)
Cell
, vol.20
, Issue.1
, pp. 65-73
-
-
Saragosti, S.1
Moyne, G.2
Yaniv, M.3
-
11
-
-
0029984469
-
Tetrahymena histone acetyltransferase A: A homolog to yeast Gcn5p linking histone acetylation to gene activation
-
DOI 10.1016/S0092-8674(00)81063-6
-
Brownell JE, Zhou J, Ranalli T, Kobayashi R, Edmondson DG, Roth SY, &, Allis CD, (1996) Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation. Cell 84, 843-851. (Pubitemid 26106854)
-
(1996)
Cell
, vol.84
, Issue.6
, pp. 843-851
-
-
Brownell, J.E.1
Zhou, J.2
Ranalli, T.3
Kobayashi, R.4
Edmondson, D.G.5
Roth, S.Y.6
Allis, C.D.7
-
12
-
-
0027068143
-
Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure
-
Hirschhorn JN, Brown SA, Clark CD, &, Winston F, (1992) Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure. Genes Dev 6, 2288-2298. (Pubitemid 23037395)
-
(1992)
Genes and Development
, vol.6
, Issue.12 A
, pp. 2288-2298
-
-
Hirschhorn, J.N.1
Brown, S.A.2
Clark, C.D.3
Winston, F.4
-
13
-
-
0028093378
-
Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex
-
DOI 10.1038/370477a0
-
Kwon H, Imbalzano AN, Khavari PA, Kingston RE, &, Green MR, (1994) Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex. Nature 370, 477-481. (Pubitemid 24263555)
-
(1994)
Nature
, vol.370
, Issue.6489
, pp. 477-481
-
-
Kwon, H.1
Imbalzano, A.N.2
Khavari, P.A.3
Kingston, R.E.4
Green, M.R.5
-
14
-
-
78650747491
-
Discovery and characterization of chromatin states for systematic annotation of the human genome
-
Ernst J, &, Kellis M, (2010) Discovery and characterization of chromatin states for systematic annotation of the human genome. Nat Biotechnol 28, 817-825.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 817-825
-
-
Ernst, J.1
Kellis, M.2
-
15
-
-
37249012276
-
Nucleosome destabilization in the epigenetic regulation of gene expression
-
DOI 10.1038/nrg2206, PII NRG2206
-
Henikoff S, (2008) Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet 9, 15-26. (Pubitemid 350277297)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.1
, pp. 15-26
-
-
Henikoff, S.1
-
16
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, &, Zhao K, (2007) High-resolution profiling of histone methylations in the human genome. Cell 129, 823-837. (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
17
-
-
0036850325
-
Cellular memory and the histone code
-
DOI 10.1016/S0092-8674(02)01080-2
-
Turner BM, (2002) Cellular memory and the histone code. Cell 111, 285-291. (Pubitemid 35341385)
-
(2002)
Cell
, vol.111
, Issue.3
, pp. 285-291
-
-
Turner, B.M.1
-
18
-
-
34249299791
-
The complex language of chromatin regulation during transcription
-
DOI 10.1038/nature05915, PII NATURE05915
-
Berger SL, (2007) The complex language of chromatin regulation during transcription. Nature 447, 407-412. (Pubitemid 46816746)
-
(2007)
Nature
, vol.447
, Issue.7143
, pp. 407-412
-
-
Berger, S.L.1
-
19
-
-
33847070442
-
The Role of Chromatin during Transcription
-
DOI 10.1016/j.cell.2007.01.015, PII S0092867407001092
-
Li B, Carey M, &, Workman JL, (2007) The role of chromatin during transcription. Cell 128, 707-719. (Pubitemid 46273570)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
20
-
-
39449088572
-
Genome-wide approaches to studying chromatin modifications
-
DOI 10.1038/nrg2270, PII NRG2270
-
Schones DE, &, Zhao K, (2008) Genome-wide approaches to studying chromatin modifications. Nat Rev Genet 9, 179-191. (Pubitemid 351271798)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.3
, pp. 179-191
-
-
Schones, D.E.1
Zhao, K.2
-
21
-
-
34547890019
-
Functions of site-specific histone acetylation and deacetylation
-
Shahbazian MD, &, Grunstein M, (2007) Functions of site-specific histone acetylation and deacetylation. Annu Rev Biochem 76, 75-100.
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 75-100
-
-
Shahbazian, M.D.1
Grunstein, M.2
-
22
-
-
44649139771
-
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation
-
Shilatifard A, (2008) Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation. Curr Opin Cell Biol 20, 341-348.
-
(2008)
Curr Opin Cell Biol
, vol.20
, pp. 341-348
-
-
Shilatifard, A.1
-
23
-
-
55449096356
-
Crosstalk among histone modifications
-
Suganuma T, &, Workman JL, (2008) Crosstalk among histone modifications. Cell 135, 604-607.
-
(2008)
Cell
, vol.135
, pp. 604-607
-
-
Suganuma, T.1
Workman, J.L.2
-
24
-
-
44449099142
-
ATP-dependent chromatin remodeling enzymes: two heads are not better, just different
-
DOI 10.1016/j.gde.2008.01.007, PII S0959437X08000117
-
Racki LR, &, Narlikar GJ, (2008) ATP-dependent chromatin remodeling enzymes: two heads are not better, just different. Curr Opin Genet Dev 18, 137-144. (Pubitemid 351756537)
-
(2008)
Current Opinion in Genetics and Development
, vol.18
, Issue.2
, pp. 137-144
-
-
Racki, L.R.1
Narlikar, G.J.2
-
25
-
-
67650725820
-
The biology of chromatin remodeling complexes
-
Clapier CR, &, Cairns BR, (2009) The biology of chromatin remodeling complexes. Annu Rev Biochem 78, 273-304.
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 273-304
-
-
Clapier, C.R.1
Cairns, B.R.2
-
26
-
-
70249121045
-
The logic of chromatin architecture and remodelling at promoters
-
Cairns BR, (2009) The logic of chromatin architecture and remodelling at promoters. Nature 461, 193-198.
-
(2009)
Nature
, vol.461
, pp. 193-198
-
-
Cairns, B.R.1
-
27
-
-
77952569347
-
Inducible gene expression: Diverse regulatory mechanisms
-
Weake VM, &, Workman JL, (2010) Inducible gene expression: diverse regulatory mechanisms. Nat Rev Genet 11, 426-437.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 426-437
-
-
Weake, V.M.1
Workman, J.L.2
-
28
-
-
0033529565
-
Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
-
DOI 10.1016/S0092-8674(00)81958-3
-
Kornberg RD, &, Lorch Y, (1999) Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98, 285-294. (Pubitemid 29380564)
-
(1999)
Cell
, vol.98
, Issue.3
, pp. 285-294
-
-
Kornberg, R.D.1
Lorch, Y.2
-
29
-
-
0017358203
-
Action of micrococcal nuclease on chromatin and the location of histone H1
-
DOI 10.1016/S0022-2836(77)80019-3
-
Noll M, &, Kornberg RD, (1977) Action of micrococcal nuclease on chromatin and the location of histone H1. J Mol Biol 109, 393-404. (Pubitemid 8034998)
-
(1977)
Journal of Molecular Biology
, vol.109
, Issue.3
, pp. 393-404
-
-
Noll, M.1
Kornberg, R.D.2
-
30
-
-
0017744159
-
Nucleosomes and subnucleosomes: heterogeneity and composition
-
Bakayev VV, Bakayeva TG, &, Varshavsky AJ, (1977) Nucleosomes and subnucleosomes: heterogeneity and composition. Cell 11, 619-629. (Pubitemid 8157352)
-
(1977)
Cell
, vol.11
, Issue.3
, pp. 619-629
-
-
Bakayev, V.V.1
Bakayeva, T.G.2
Varshavsky, A.J.3
-
31
-
-
0021760689
-
Structure of the nucleosome core particle at 7 Å resolution
-
Richmond TJ, Finch JT, Rushton B, Rhodes D, &, Klug A, (1984) Structure of the nucleosome core particle at 7 Å resolution. Nature 311, 532-537.
-
(1984)
Nature
, vol.311
, pp. 532-537
-
-
Richmond, T.J.1
Finch, J.T.2
Rushton, B.3
Rhodes, D.4
Klug, A.5
-
32
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 Å resolution
-
DOI 10.1038/38444
-
Luger K, Mader AW, Richmond RK, Sargent DF, &, Richmond TJ, (1997) Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389, 251-260. (Pubitemid 27406632)
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
33
-
-
0033370817
-
Chromatin structure revisited
-
Zlatanova J, Leuba SH, &, van Holde K, (1999) Chromatin structure revisited. Crit Rev Eukaryot Gene Expr 9, 245-255. (Pubitemid 30053877)
-
(1999)
Critical Reviews in Eukaryotic Gene Expression
, vol.9
, Issue.3-4
, pp. 245-255
-
-
Zlatanova, J.1
Leuba, S.H.2
Van Holde, K.3
-
34
-
-
0019332512
-
Subunit structures of different electrophoretic forms of nucleosomes
-
Albright SC, Wiseman JM, Lange RA, &, Garrard WT, (1980) Subunit structures of different electrophoretic forms of nucleosomes. J Biol Chem 255, 3673-3684.
-
(1980)
J Biol Chem
, vol.255
, pp. 3673-3684
-
-
Albright, S.C.1
Wiseman, J.M.2
Lange, R.A.3
Garrard, W.T.4
-
35
-
-
0018266771
-
Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones
-
Simpson RT, (1978) Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones. Biochemistry 17, 5524-5531.
-
(1978)
Biochemistry
, vol.17
, pp. 5524-5531
-
-
Simpson, R.T.1
-
36
-
-
0020131558
-
Participation of core histone 'tails' in the stabilization of the chromatin solenoid
-
Allan J, Harborne N, Rau DC, &, Gould H, (1982) Participation of core histone 'tails' in the stabilization of the chromatin solenoid. J Cell Biol 93, 285-297.
-
(1982)
J Cell Biol
, vol.93
, pp. 285-297
-
-
Allan, J.1
Harborne, N.2
Rau, D.C.3
Gould, H.4
-
37
-
-
0018581187
-
Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin
-
DOI 10.1083/jcb.83.2.403
-
Thoma F, Koller T, &, Klug A, (1979) Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. J Cell Biol 83, 403-427. (Pubitemid 10205723)
-
(1979)
Journal of Cell Biology
, vol.83
, Issue.2
, pp. 403-427
-
-
Thoma, F.1
Koller, Th.2
Klug, A.3
-
38
-
-
48249103503
-
Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure
-
Routh A, Sandin S, &, Rhodes D, (2008) Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure. Proc Natl Acad Sci USA 105, 8872-8877.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 8872-8877
-
-
Routh, A.1
Sandin, S.2
Rhodes, D.3
-
39
-
-
0018581746
-
Metaphase chromosome structure: evidence for a radial loop model
-
Marsden MP, &, Laemmli UK, (1979) Metaphase chromosome structure: evidence for a radial loop model. Cell 17, 849-858. (Pubitemid 9252294)
-
(1979)
Cell
, vol.17
, Issue.4
, pp. 849-858
-
-
Marsden, M.P.F.1
Laemmli, U.K.2
-
40
-
-
0018416116
-
Nucleosome packing in interphase chromatin
-
DOI 10.1083/jcb.81.2.453
-
Rattner JB, &, Hamkalo BA, (1979) Nucleosome packing in interphase chromatin. J Cell Biol 81, 453-457. (Pubitemid 9162950)
-
(1979)
Journal of Cell Biology
, vol.81
, Issue.2
, pp. 453-457
-
-
Rattner, J.B.1
Hamkalo, B.A.2
-
41
-
-
33744831161
-
Structure of the '30 nm' chromatin fibre: A key role for the linker histone
-
DOI 10.1016/j.sbi.2006.05.007, PII S0959440X06000741
-
Robinson PJ, &, Rhodes D, (2006) Structure of the '30 nm' chromatin fibre: a key role for the linker histone. Curr Opin Struct Biol 16, 336-343. (Pubitemid 43831648)
-
(2006)
Current Opinion in Structural Biology
, vol.16
, Issue.3
, pp. 336-343
-
-
Robinson, P.J.1
Rhodes, D.2
-
42
-
-
0022650876
-
Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length
-
Williams SP, Athey BD, Muglia LJ, Schappe RS, Gough AH, &, Langmore JP, (1986) Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length. Biophys J 49, 233-248. (Pubitemid 16155467)
-
(1986)
Biophysical Journal
, vol.49
, Issue.1
, pp. 233-248
-
-
Williams, S.P.1
Athey, B.D.2
Muglia, L.J.3
-
43
-
-
21844436803
-
X-ray structure of a tetranucleosome and its implications for the chromatin fibre
-
DOI 10.1038/nature03686
-
Schalch T, Duda S, Sargent DF, &, Richmond TJ, (2005) X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature 436, 138-141. (Pubitemid 40966200)
-
(2005)
Nature
, vol.436
, Issue.7047
, pp. 138-141
-
-
Schalch, T.1
Duda, S.2
Sargent, D.F.3
Richmond, T.J.4
-
44
-
-
0000878535
-
Solenoidal model for superstructure in chromatin
-
Finch JT, &, Klug A, (1976) Solenoidal model for superstructure in chromatin. Proc Natl Acad Sci USA 73, 1897-1901.
-
(1976)
Proc Natl Acad Sci USA
, vol.73
, pp. 1897-1901
-
-
Finch, J.T.1
Klug, A.2
-
45
-
-
33646242052
-
EM measurements define the dimensions of the '30-nm' chromatin fiber: Evidence for a compact, interdigitated structure
-
Robinson PJ, Fairall L, Huynh VA, &, Rhodes D, (2006) EM measurements define the dimensions of the '30-nm' chromatin fiber: evidence for a compact, interdigitated structure. Proc Natl Acad Sci USA 103, 6506-6511.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6506-6511
-
-
Robinson, P.J.1
Fairall, L.2
Huynh, V.A.3
Rhodes, D.4
-
46
-
-
0033215443
-
Looping versus linking: Toward a model for long-distance gene activation
-
DOI 10.1101/gad.13.19.2465
-
Bulger M, &, Groudine M, (1999) Looping versus linking: toward a model for long-distance gene activation. Genes Dev 13, 2465-2477. (Pubitemid 29489638)
-
(1999)
Genes and Development
, vol.13
, Issue.19
, pp. 2465-2477
-
-
Bulger, M.1
Groudine, M.2
-
47
-
-
65249098363
-
Large-scale chromatin structure of inducible genes: Transcription on a condensed, linear template
-
Hu Y, Kireev I, Plutz M, Ashourian N, &, Belmont AS, (2009) Large-scale chromatin structure of inducible genes: transcription on a condensed, linear template. J Cell Biol 185, 87-100.
-
(2009)
J Cell Biol
, vol.185
, pp. 87-100
-
-
Hu, Y.1
Kireev, I.2
Plutz, M.3
Ashourian, N.4
Belmont, A.S.5
-
48
-
-
41449104343
-
In vivo immunogold labeling confirms large-scale chromatin folding motifs
-
DOI 10.1038/nmeth.1196, PII NMETH.1196
-
Kireev I, Lakonishok M, Liu W, Joshi VN, Powell R, &, Belmont AS, (2008) In vivo immunogold labeling confirms large-scale chromatin folding motifs. Nat Methods 5, 311-313. (Pubitemid 351455157)
-
(2008)
Nature Methods
, vol.5
, Issue.4
, pp. 311-313
-
-
Kireev, I.1
Lakonishok, M.2
Liu, W.3
Joshi, V.N.4
Powell, R.5
Belmont, A.S.6
-
49
-
-
4644360416
-
Visualization of early chromosome condensation: A hierarchical folding, axial glue model of chromosome structure
-
DOI 10.1083/jcb.200406049
-
Kireeva N, Lakonishok M, Kireev I, Hirano T, &, Belmont AS, (2004) Visualization of early chromosome condensation: a hierarchical folding, axial glue model of chromosome structure. J Cell Biol 166, 775-785. (Pubitemid 39263782)
-
(2004)
Journal of Cell Biology
, vol.166
, Issue.6
, pp. 775-785
-
-
Kireeva, N.1
Lakonishok, M.2
Kireev, I.3
Hirano, T.4
Belmont, A.S.5
-
50
-
-
0035833262
-
Large-scale chromatin decondensation and recondensation regulated by transcription from a natural promoter
-
DOI 10.1083/jcb.200011069
-
Muller WG, Walker D, Hager GL, &, McNally JG, (2001) Large-scale chromatin decondensation and recondensation regulated by transcription from a natural promoter. J Cell Biol 154, 33-48. (Pubitemid 34289276)
-
(2001)
Journal of Cell Biology
, vol.154
, Issue.1
, pp. 33-48
-
-
Muller, W.G.1
Walker, D.2
Hager, G.L.3
McNally, J.G.4
-
51
-
-
58149401194
-
Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ
-
Eltsov M, Maclellan KM, Maeshima K, Frangakis AS, &, Dubochet J, (2008) Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ. Proc Natl Acad Sci USA 105, 19732-19737.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 19732-19737
-
-
Eltsov, M.1
MacLellan, K.M.2
Maeshima, K.3
Frangakis, A.S.4
Dubochet, J.5
-
52
-
-
0020466758
-
Rapid reformation of the thick chromosome fiber upon completion of RNA synthesis at the Balbiani ring genes in Chironomus tentans
-
DOI 10.1007/BF00333508
-
Andersson K, Mahr R, Bjorkroth B, &, Daneholt B, (1982) Rapid reformation of the thick chromosome fiber upon completion of RNA synthesis at the Balbiani ring genes in Chironomus tentans. Chromosoma 87, 33-48. (Pubitemid 13182562)
-
(1982)
Chromosoma
, vol.87
, Issue.1
, pp. 33-48
-
-
Andersson, K.1
Mahr, R.2
Bjorkroth, B.3
Daneholt, B.4
-
53
-
-
0023886901
-
Structure of the chromatin axis during transcription
-
Bjorkroth B, Ericsson C, Lamb MM, &, Daneholt B, (1988) Structure of the chromatin axis during transcription. Chromosoma 96, 333-340.
-
(1988)
Chromosoma
, vol.96
, pp. 333-340
-
-
Bjorkroth, B.1
Ericsson, C.2
Lamb, M.M.3
Daneholt, B.4
-
54
-
-
33646926758
-
Dynamic nucleosomes and gene transcription
-
DOI 10.1016/j.tig.2006.03.008, PII S0168952506001120
-
Mellor J, (2006) Dynamic nucleosomes and gene transcription. Trends Genet 22, 320-329. (Pubitemid 43794925)
-
(2006)
Trends in Genetics
, vol.22
, Issue.6
, pp. 320-329
-
-
Mellor, J.1
-
55
-
-
33747773708
-
Histone H3 acetylation and H3 K4 methylation define distinct chromatin regions permissive for transgene expression
-
DOI 10.1128/MCB.00311-06
-
Yan C, &, Boyd DD, (2006) Histone H3 acetylation and H3 K4 methylation define distinct chromatin regions permissive for transgene expression. Mol Cell Biol 26, 6357-6371. (Pubitemid 44277877)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.17
, pp. 6357-6371
-
-
Yan, C.1
Boyd, D.D.2
-
56
-
-
0019160713
-
Deoxyribonuclease i sensitivity of the nontranscribed sequences flanking the 5′ and 3′ ends of the ovomucoid gene and the ovalbumin and its related X and y genes in hen oviduct nuclei
-
Lawson GM, Tsai MJ, &, O'Malley BW, (1980) Deoxyribonuclease I sensitivity of the nontranscribed sequences flanking the 5′ and 3′ ends of the ovomucoid gene and the ovalbumin and its related X and Y genes in hen oviduct nuclei. Biochemistry 19, 4403-4441.
-
(1980)
Biochemistry
, vol.19
, pp. 4403-4441
-
-
Lawson, G.M.1
Tsai, M.J.2
O'Malley, B.W.3
-
57
-
-
0020479229
-
Chromatin structure of the chicken beta-globin gene region. Sensitivity to DNase I, micrococcal nuclease, and DNase II
-
Wood WI, &, Felsenfeld G, (1982) Chromatin structure of the chicken beta-globin gene region. Sensitivity to DNase I, micrococcal nuclease, and DNase II. J Biol Chem 257, 7730-7736.
-
(1982)
J Biol Chem
, vol.257
, pp. 7730-7736
-
-
Wood, W.I.1
Felsenfeld, G.2
-
58
-
-
0021154333
-
β-Globin gene family in murine erythroleukemia cells residues within two chromatin domains differing in higher order structure
-
Smith RD, Yu J, Annunziato A, &, Seale RL, (1984) beta-Globin gene family in murine erythroleukemia cells resides within two chromatin domains differing in higher order structure. Biochemistry 23, 2970-2976. (Pubitemid 14099198)
-
(1984)
Biochemistry
, vol.23
, Issue.13
, pp. 2970-2976
-
-
Smith, R.D.1
Yu, J.2
Annunziato, A.3
Seale, R.L.4
-
59
-
-
0023046957
-
The DNase i sensitive domain of the chicken lysozyme gene spans 24 kb
-
Jantzen K, Fritton HP, &, Igo-Kemenes T, (1986) The DNase I sensitive domain of the chicken lysozyme gene spans 24 kb. Nucleic Acids Res 14, 6085-6099.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 6085-6099
-
-
Jantzen, K.1
Fritton, H.P.2
Igo-Kemenes, T.3
-
60
-
-
0019332687
-
Differential nuclease sensitivity of the ovalbumin and beta-globin chromatin regions in erythrocytes and oviduct cells of laying hen
-
Bellard M, Kuo MT, Dretzen G, &, Chambon P, (1980) Differential nuclease sensitivity of the ovalbumin and beta-globin chromatin regions in erythrocytes and oviduct cells of laying hen. Nucleic Acids Res 8, 2737-2750.
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 2737-2750
-
-
Bellard, M.1
Kuo, M.T.2
Dretzen, G.3
Chambon, P.4
-
61
-
-
0019425515
-
Rearranged and germline immunoglobulin κ genes: Different states of DNase I sensitivity of constant κ genes in immunocompetent and nonimmune cells
-
DOI 10.1021/bi00507a053
-
Storb U, Wilson R, Selsing E, &, Walfield A, (1981) Rearranged and germline immunoglobulin kappa genes: different states of DNase I sensitivity of constant kappa genes in immunocompetent and nonimmune cells. Biochemistry 20, 990-996. (Pubitemid 11097559)
-
(1981)
Biochemistry
, vol.20
, Issue.4
, pp. 990-996
-
-
Storb, U.1
Wilson, R.2
Selsing, E.3
Walfield, A.4
-
62
-
-
0024841323
-
The limits of the DNase I-sensitive domain of the human apolipoprotein B gene coincide with the locations of chromosomal anchorage loops and define the 5' and 3' boundaries of the gene
-
Levy-Wilson B, &, Fortier C, (1989) The limits of the DNase I-sensitive domain of the human apolipoprotein B gene coincide with the locations of chromosomal anchorage loops and define the 5′ and 3′ boundaries of the gene. J Biol Chem 264, 21196-21204. (Pubitemid 20017938)
-
(1989)
Journal of Biological Chemistry
, vol.264
, Issue.35
, pp. 21196-21204
-
-
Levy-Wilson, B.1
Fortier, C.2
-
63
-
-
59149099063
-
The chromatin of active genes is not in a permanently open conformation
-
Sapojnikova N, Thorne A, Myers F, Staynov D, &, Crane-Robinson C, (2009) The chromatin of active genes is not in a permanently open conformation. J Mol Biol 386, 290-299.
-
(2009)
J Mol Biol
, vol.386
, pp. 290-299
-
-
Sapojnikova, N.1
Thorne, A.2
Myers, F.3
Staynov, D.4
Crane-Robinson, C.5
-
64
-
-
0037079658
-
The chicken lysozyme chromatin domain contains a second, widely expressed gene
-
Chong S, Riggs AD, &, Bonifer C, (2002) The chicken lysozyme chromatin domain contains a second, widely expressed gene. Nucleic Acids Res 30, 463-467. (Pubitemid 34679607)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.2
, pp. 463-467
-
-
Chong, S.1
Riggs, A.D.2
Bonifer, C.3
-
65
-
-
4444258534
-
Chromatin architecture of the human genome: Gene-rich domains are enriched in open chromatin fibers
-
DOI 10.1016/j.cell.2004.08.011, PII S0092867404007883
-
Gilbert N, Boyle S, Fiegler H, Woodfine K, Carter NP, &, Bickmore WA, (2004) Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers. Cell 118, 555-566. (Pubitemid 39179709)
-
(2004)
Cell
, vol.118
, Issue.5
, pp. 555-566
-
-
Gilbert, N.1
Boyle, S.2
Fiegler, H.3
Woodfine, K.4
Carter, N.P.5
Bickmore, W.A.6
-
66
-
-
0022553738
-
Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites
-
Cockerill PN, &, Garrard WT, (1986) Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites. Cell 44, 273-282. (Pubitemid 16048213)
-
(1986)
Cell
, vol.44
, Issue.2
, pp. 273-282
-
-
Cockerill, P.N.1
Garrard, W.T.2
-
67
-
-
0021675784
-
Organization of the higher-order chromatin loop: Specific DNA attachment sites on nuclear scaffold
-
Mirkovitch J, Mirault ME, &, Laemmli UK, (1984) Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold. Cell 39, 223-232. (Pubitemid 15218240)
-
(1984)
Cell
, vol.39
, Issue.1
, pp. 223-232
-
-
Mirkovitch, J.1
Mirault, M.-E.2
Laemmli, U.K.3
-
68
-
-
0024948946
-
A nuclear DNA attachment element mediates elevated and position-independent gene activity
-
DOI 10.1038/341343a0
-
Stief A, Winter DM, Stratling WH, &, Sippel AE, (1989) A nuclear DNA attachment element mediates elevated and position-independent gene activity. Nature 341, 343-345. (Pubitemid 20102106)
-
(1989)
Nature
, vol.341
, Issue.6240
, pp. 343-345
-
-
Stief, A.1
Winter, D.M.2
Stratling, W.H.3
Sippel, A.E.4
-
69
-
-
0026711089
-
A group of scs elements function as domain boundaries in an enhancer-blocking assay
-
Kellum R, &, Schedl P, (1992) A group of scs elements function as domain boundaries in an enhancer-blocking assay. Mol Cell Biol 12, 2424-2431.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 2424-2431
-
-
Kellum, R.1
Schedl, P.2
-
70
-
-
0023050122
-
Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster
-
Gasser SM, &, Laemmli UK, (1986) Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell 46, 521-530.
-
(1986)
Cell
, vol.46
, pp. 521-530
-
-
Gasser, S.M.1
Laemmli, U.K.2
-
71
-
-
0036467996
-
Insulators: Many functions, many mechanisms
-
DOI 10.1101/gad.954702
-
West AG, Gaszner M, &, Felsenfeld G, (2002) Insulators: many functions, many mechanisms. Genes Dev 16, 271-288. (Pubitemid 34111407)
-
(2002)
Genes and Development
, vol.16
, Issue.3
, pp. 271-288
-
-
West, A.G.1
Gaszner, M.2
Felsenfeld, G.3
-
72
-
-
0038022782
-
Genomic insulators: Connecting properties to mechanism
-
DOI 10.1016/S0955-0674(03)00039-5
-
Kuhn EJ, &, Geyer PK, (2003) Genomic insulators: connecting properties to mechanism. Curr Opin Cell Biol 15, 259-265. (Pubitemid 36638642)
-
(2003)
Current Opinion in Cell Biology
, vol.15
, Issue.3
, pp. 259-265
-
-
Kuhn, E.J.1
Geyer, P.K.2
-
73
-
-
0031615110
-
The scs and scs' insulator elements impart a cis requirement on enhancer-promoter interactions
-
Krebs JE, &, Dunaway M, (1998) The scs and scs' insulator elements impart a cis requirement on enhancer-promoter interactions. Mol Cell 1, 301-308. (Pubitemid 128378670)
-
(1998)
Molecular Cell
, vol.1
, Issue.2
, pp. 301-308
-
-
Krebs, J.E.1
Dunaway, M.2
-
74
-
-
0022178109
-
The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains
-
DOI 10.1016/0022-2836(85)90408-5
-
Udvardy A, Maine E, &, Schedl P, (1985) The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains. J Mol Biol 185, 341-358. (Pubitemid 16250035)
-
(1985)
Journal of Molecular Biology
, vol.185
, Issue.2
, pp. 341-358
-
-
Udvardy, A.1
Maine, E.2
Schedl, P.3
-
75
-
-
46149108345
-
Rapid, Transcription-Independent Loss of Nucleosomes over a Large Chromatin Domain at Hsp70 Loci
-
DOI 10.1016/j.cell.2008.05.029, PII S0092867408006892
-
Petesch SJ, &, Lis JT, (2008) Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci. Cell 134, 74-84. (Pubitemid 351905736)
-
(2008)
Cell
, vol.134
, Issue.1
, pp. 74-84
-
-
Petesch, S.J.1
Lis, J.T.2
-
76
-
-
0026027982
-
A position-effect assay for boundaries of higher order chromosomal domains
-
Kellum R, &, Schedl P, (1991) A position-effect assay for boundaries of higher order chromosomal domains. Cell 64, 941-950. (Pubitemid 121001181)
-
(1991)
Cell
, vol.64
, Issue.5
, pp. 941-950
-
-
Kellum, R.1
Schedl, P.2
-
77
-
-
0031724356
-
Identification of a class of chromatin boundary elements
-
Cuvier O, Hart CM, &, Laemmli UK, (1998) Identification of a class of chromatin boundary elements. Mol Cell Biol 18, 7478-7486. (Pubitemid 28533066)
-
(1998)
Molecular and Cellular Biology
, vol.18
, Issue.12
, pp. 7478-7486
-
-
Cuvier, O.1
Hart, C.M.2
Laemmli, U.K.3
-
78
-
-
0029063587
-
Visualization of chromosomal domains with boundary element-associated factor BEAF-32
-
Zhao K, Hart CM, &, Laemmli UK, (1995) Visualization of chromosomal domains with boundary element-associated factor BEAF-32. Cell 81, 879-889.
-
(1995)
Cell
, vol.81
, pp. 879-889
-
-
Zhao, K.1
Hart, C.M.2
Laemmli, U.K.3
-
79
-
-
0028110864
-
The protein encoded by the Drosophila position-effect variegation suppressor gene Su(var)3-9 combines domains of antagonistic regulators of homeotic gene complexes
-
Tschiersch B, Hofmann A, Krauss V, Dorn R, Korge G, &, Reuter G, (1994) The protein encoded by the Drosophila position-effect variegation suppressor gene Su(var)3-9 combines domains of antagonistic regulators of homeotic gene complexes. EMBO J 13, 3822-3831. (Pubitemid 24275028)
-
(1994)
EMBO Journal
, vol.13
, Issue.16
, pp. 3822-3831
-
-
Tschiersch, B.1
Hofmann, A.2
Krauss, V.3
Dorn, R.4
Korge, G.5
Reuter, G.6
-
80
-
-
0034056777
-
Structure-function analysis of SUV39H1 reveals a dominant role in heterochromatin organization, chromosome segregation, and mitotic progression
-
Melcher M, Schmid M, Aagaard L, Selenko P, Laible G, &, Jenuwein T, (2000) Structure-function analysis of SUV39H1 reveals a dominant role in heterochromatin organization, chromosome segregation, and mitotic progression. Mol Cell Biol 20, 3728-3741.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 3728-3741
-
-
Melcher, M.1
Schmid, M.2
Aagaard, L.3
Selenko, P.4
Laible, G.5
Jenuwein, T.6
-
81
-
-
48949085110
-
Cohesin and CTCF: Cooperating to control chromosome conformation?
-
Gause M, Schaaf CA, &, Dorsett D, (2008) Cohesin and CTCF: cooperating to control chromosome conformation? Bioessays 30, 715-718.
-
(2008)
Bioessays
, vol.30
, pp. 715-718
-
-
Gause, M.1
Schaaf, C.A.2
Dorsett, D.3
-
82
-
-
33748259774
-
CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus
-
DOI 10.1101/gad.399506
-
Splinter E, Heath H, Kooren J, Palstra RJ, Klous P, Grosveld F, Galjart N, &, de Laat W, (2006) CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus. Genes Dev 20, 2349-2354. (Pubitemid 44320383)
-
(2006)
Genes and Development
, vol.20
, Issue.17
, pp. 2349-2354
-
-
Splinter, E.1
Heath, H.2
Kooren, J.3
Palstra, R.-J.4
Klous, P.5
Grosveld, F.6
Galjart, N.7
De Laat, W.8
-
83
-
-
0035085098
-
Long-range nucleosome ordering is associated with gene silencing in Drosophila melanogaster pericentric heterochromatin
-
DOI 10.1128/MCB.21.8.2867-2879.2001
-
Sun FL, Cuaycong MH, &, Elgin SC, (2001) Long-range nucleosome ordering is associated with gene silencing in Drosophila melanogaster pericentric heterochromatin. Mol Cell Biol 21, 2867-2879. (Pubitemid 32244930)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.8
, pp. 2867-2879
-
-
Sun, F.-L.1
Cuaycong, M.H.2
Elgin, S.C.R.3
-
84
-
-
59649124442
-
Nucleosomes can invade DNA territories occupied by their neighbors
-
Engeholm M, de Jager M, Flaus A, Brenk R, van Noort J, &, Owen-Hughes T, (2009) Nucleosomes can invade DNA territories occupied by their neighbors. Nat Struct Mol Biol 16, 151-158.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 151-158
-
-
Engeholm, M.1
De Jager, M.2
Flaus, A.3
Brenk, R.4
Van Noort, J.5
Owen-Hughes, T.6
-
85
-
-
34147206547
-
A modular enhancer is differentially regulated by GATA and NFAT elements that direct different tissue-specific patterns of nucleosome positioning and inducible chromatin remodeling
-
DOI 10.1128/MCB.02323-06
-
Bert AG, Johnson BV, Baxter EW, &, Cockerill PN, (2007) A modular enhancer is differentially regulated by GATA and NFAT elements that direct different tissue-specific patterns of nucleosome positioning and inducible chromatin remodeling. Mol Cell Biol 27, 2870-2885. (Pubitemid 46581303)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.8
, pp. 2870-2885
-
-
Bert, A.G.1
Johnson, B.V.2
Baxter, E.W.3
Cockerill, P.N.4
-
86
-
-
4444294851
-
Granulocyte-macrophage colony-stimulating factor enhancer activation requires cooperation between NFAT and AP-1 elements and is associated with extensive nucleosome reorganization
-
DOI 10.1128/MCB.24.18.7914-7930.2004
-
Johnson BV, Bert AG, Ryan GR, Condina A, &, Cockerill PN, (2004) GM-CSF enhancer activation requires cooperation between NFAT and AP-1 elements and is associated with extensive nucleosome reorganization. Mol Cell Biol 24, 7914-7930. (Pubitemid 39167442)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.18
, pp. 7914-7930
-
-
Johnson, B.V.1
Bert, A.G.2
Ryan, G.R.3
Condina, A.4
Cockerill, P.N.5
-
87
-
-
71449127067
-
Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II
-
Kulaeva OI, Gaykalova DA, Pestov NA, Golovastov VV, Vassylyev DG, Artsimovitch I, &, Studitsky VM, (2009) Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II. Nat Struct Mol Biol 16, 1272-1278.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1272-1278
-
-
Kulaeva, O.I.1
Gaykalova, D.A.2
Pestov, N.A.3
Golovastov, V.V.4
Vassylyev, D.G.5
Artsimovitch, I.6
Studitsky, V.M.7
-
88
-
-
77954934291
-
RNA polymerase complexes cooperate to relieve the nucleosomal barrier and evict histones
-
Kulaeva OI, Hsieh FK, &, Studitsky VM, (2010) RNA polymerase complexes cooperate to relieve the nucleosomal barrier and evict histones. Proc Natl Acad Sci USA 107, 11325-11330.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 11325-11330
-
-
Kulaeva, O.I.1
Hsieh, F.K.2
Studitsky, V.M.3
-
89
-
-
9644270350
-
Nuclear factor 1 and octamer transcription factor 1 binding preset the chromatin structure of the mouse mammary tumor virus promoter for hormone induction
-
DOI 10.1074/jbc.M409713200
-
Belikov S, Holmqvist PH, Astrand C, &, Wrange O, (2004) Nuclear factor 1 and octamer transcription factor 1 binding preset the chromatin structure of the mouse mammary tumor virus promoter for hormone induction. J Biol Chem 279, 49857-49867. (Pubitemid 39577792)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.48
, pp. 49857-49867
-
-
Belikov, S.1
Holmqvist, P.-H.2
Astrand, C.3
Wrange, O.4
-
90
-
-
68949198784
-
Chromatin structure and DNA methylation of the IL-4 gene in human T(H)2 cells
-
Santangelo S, Cousins DJ, Winkelmann N, Triantaphyllopoulos K, &, Staynov DZ, (2009) Chromatin structure and DNA methylation of the IL-4 gene in human T(H)2 cells. Chromosome Res 17, 485-496.
-
(2009)
Chromosome Res
, vol.17
, pp. 485-496
-
-
Santangelo, S.1
Cousins, D.J.2
Winkelmann, N.3
Triantaphyllopoulos, K.4
Staynov, D.Z.5
-
91
-
-
15444381278
-
Mechanisms of transcriptional regulation of the human IL-3/GM-CSF locus by inducible tissue-specific promoters and enhancers
-
DOI 10.1615/CritRevImmunol.v24.i6.10
-
Cockerill PN, (2004) Mechanisms of transcriptional regulation of the human IL-3/GM-CSF locus by inducible tissue-specific promoters and enhancers. Crit Rev Immunol 24, 385-408. (Pubitemid 40397318)
-
(2004)
Critical Reviews in Immunology
, vol.24
, Issue.6
, pp. 385-408
-
-
Cockerill, P.N.1
-
92
-
-
0020337791
-
Disruption of the typical chromatin structure in a 2500 base-pair region at the 5′ end of the actively transcribed ovalbumin gene
-
Bellard M, Dretzen G, Bellard F, Oudet P, &, Chambon P, (1982) Disruption of the typical chromatin structure in a 2500 base-pair region at the 5′ end of the actively transcribed ovalbumin gene. EMBO J 1, 223-230.
-
(1982)
EMBO J
, vol.1
, pp. 223-230
-
-
Bellard, M.1
Dretzen, G.2
Bellard, F.3
Oudet, P.4
Chambon, P.5
-
93
-
-
0021255910
-
Differentiation-dependent chromatin alterations precede and accompany transcription of immunoglobulin light chain genes
-
Rose SM, &, Garrard WT, (1984) Differentiation-dependent chromatin alterations precede and accompany transcription of immunoglobulin light chain genes. J Biol Chem 259, 8534-8544. (Pubitemid 14090615)
-
(1984)
Journal of Biological Chemistry
, vol.259
, Issue.13
, pp. 8534-8544
-
-
Rose, S.M.1
Garrard, W.T.2
-
94
-
-
0022968816
-
Transcription termination and chromatin structure of the active immunoglobulin κ gene locus
-
Xu M, Barnard MB, Rose SM, Cockerill PN, Huang SY, &, Garrard WT, (1986) Transcription termination and chromatin structure of the active immunoglobulin kappa gene locus. J Biol Chem 261, 3838-3845. (Pubitemid 17200688)
-
(1986)
Journal of Biological Chemistry
, vol.261
, Issue.8
, pp. 3838-3845
-
-
Xu, M.1
Barnard, M.B.2
Rose, S.M.3
-
95
-
-
0026110586
-
Histone H1 and the conformation of transcriptionally active chromatin
-
Garrard WT, (1991) Histone H1 and the conformation of transcriptionally active chromatin. Bioessays 13, 87-88. (Pubitemid 121000547)
-
(1991)
BioEssays
, vol.13
, Issue.2
, pp. 87-88
-
-
Garrard, W.T.1
-
96
-
-
0025081555
-
Chromatin structure of transcriptionally competent and repressed genes
-
Kamakaka RT, &, Thomas JO, (1990) Chromatin structure of transcriptionally competent and repressed genes. EMBO J 9, 3997-4006.
-
(1990)
EMBO J
, vol.9
, pp. 3997-4006
-
-
Kamakaka, R.T.1
Thomas, J.O.2
-
97
-
-
29244467484
-
Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length
-
Woodcock CL, Skoultchi AI, &, Fan Y, (2006) Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length. Chromosome Res 14, 17-25.
-
(2006)
Chromosome Res
, vol.14
, pp. 17-25
-
-
Woodcock, C.L.1
Skoultchi, A.I.2
Fan, Y.3
-
98
-
-
0024414257
-
Dominant and specific repression of Xenopus oocyte 5S RNA genes and satellite I DNA by histone H1
-
Wolffe AP, (1989) Dominant and specific repression of Xenopus oocyte 5S RNA genes and satellite I DNA by histone H1. EMBO J 8, 527-537. (Pubitemid 19274973)
-
(1989)
EMBO Journal
, vol.8
, Issue.2
, pp. 527-537
-
-
Wolffe, A.P.1
-
99
-
-
0018375466
-
Selective displacement of histone H1 from whole HeLa nuclei: effect on chromatin structure in situ as probed by micrococcal nuclease
-
DOI 10.1021/bi00578a005
-
Lawson GM, &, Cole RD, (1979) Selective displacement of histone H1 from whole HeLa nuclei: effect on chromatin structure in situ as probed by micrococcal nuclease. Biochemistry 18, 2160-2166. (Pubitemid 9191032)
-
(1979)
Biochemistry
, vol.18
, Issue.11
, pp. 2160-2166
-
-
Lawson, G.M.1
Cole, R.D.2
-
100
-
-
48449106172
-
30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction
-
Robinson PJ, An W, Routh A, Martino F, Chapman L, Roeder RG, &, Rhodes D, (2008) 30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction. J Mol Biol 381, 816-825.
-
(2008)
J Mol Biol
, vol.381
, pp. 816-825
-
-
Robinson, P.J.1
An, W.2
Routh, A.3
Martino, F.4
Chapman, L.5
Roeder, R.G.6
Rhodes, D.7
-
101
-
-
29244449333
-
Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation
-
DOI 10.1016/j.cell.2005.10.028, PII S0092867405011724
-
Fan Y, Nikitina T, Zhao J, Fleury TJ, Bhattacharyya R, Bouhassira EE, Stein A, Woodcock CL, &, Skoultchi AI, (2005) Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation. Cell 123, 1199-1212. (Pubitemid 41821779)
-
(2005)
Cell
, vol.123
, Issue.7
, pp. 1199-1212
-
-
Fan, Y.1
Nikitina, T.2
Zhao, J.3
Fleury, T.J.4
Bhattacharyya, R.5
Bouhassira, E.E.6
Stein, A.7
Woodcock, C.L.8
Skoultchi, A.I.9
-
102
-
-
0020660260
-
Eukaryotic RNA polymerase II binds to nucleosome cores from transcribed genes
-
DOI 10.1038/301482a0
-
Baer BW, &, Rhodes D, (1983) Eukaryotic RNA polymerase II binds to nucleosome cores from transcribed genes. Nature 301, 482-488. (Pubitemid 13160567)
-
(1983)
Nature
, vol.301
, Issue.5900
, pp. 482-488
-
-
Baer, B.W.1
Rhodes, D.2
-
104
-
-
17644369665
-
Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division
-
DOI 10.1038/sj.embor.7400366
-
Chow CM, Georgiou A, Szutorisz H, Maia e Silva A, Pombo A, Barahona I, Dargelos E, Canzonetta C, &, Dillon N, (2005) Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division. EMBO Rep 6, 354-360. (Pubitemid 40561628)
-
(2005)
EMBO Reports
, vol.6
, Issue.4
, pp. 354-360
-
-
Chow, C.-M.1
Georgiou, A.2
Szutorisz, H.3
Maia E Silva, A.4
Pombo, A.5
Barahona, I.6
Dargelos, E.7
Canzonetta, C.8
Dillon, N.9
-
105
-
-
27144510368
-
Genome-scale profiling of histone H3.3 replacement patterns
-
DOI 10.1038/ng1637, PII N1637
-
Mito Y, Henikoff JG, &, Henikoff S, (2005) Genome-scale profiling of histone H3.3 replacement patterns. Nat Genet 37, 1090-1097. (Pubitemid 41486661)
-
(2005)
Nature Genetics
, vol.37
, Issue.10
, pp. 1090-1097
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
106
-
-
17044394787
-
Transcriptional activation triggers deposition and removal of the histone variant H3.3
-
Schwartz BE, &, Ahmad K, (2005) Transcriptional activation triggers deposition and removal of the histone variant H3.3. Genes Dev 19, 804-814.
-
(2005)
Genes Dev
, vol.19
, pp. 804-814
-
-
Schwartz, B.E.1
Ahmad, K.2
-
107
-
-
34250745886
-
Nucleosome stability mediated by histone variants H3.3 and H2A.Z
-
DOI 10.1101/gad.1547707
-
Jin C, &, Felsenfeld G, (2007) Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev 21, 1519-1529. (Pubitemid 46955724)
-
(2007)
Genes and Development
, vol.21
, Issue.12
, pp. 1519-1529
-
-
Jin, C.1
Felsenfeld, G.2
-
108
-
-
71349083638
-
Histone H1 binding is inhibited by histone variant H3.3
-
Braunschweig U, Hogan GJ, Pagie L, &, van SteenselB, (2009) Histone H1 binding is inhibited by histone variant H3.3. EMBO J 28, 3635-3645.
-
(2009)
EMBO J
, vol.28
, pp. 3635-3645
-
-
Braunschweig, U.1
Hogan, G.J.2
Pagie, L.3
Van, S.4
-
109
-
-
0038682011
-
PARP goes transcription
-
DOI 10.1016/S0092-8674(03)00433-1
-
Kraus WL, &, Lis JT, (2003) PARP goes transcription. Cell 113, 677-683. (Pubitemid 36724932)
-
(2003)
Cell
, vol.113
, Issue.6
, pp. 677-683
-
-
Kraus, W.L.1
Lis, J.T.2
-
110
-
-
10944227347
-
+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1
-
DOI 10.1016/j.cell.2004.11.002, PII S009286740401044X
-
Kim MY, Mauro S, Gevry N, Lis JT, &, Kraus WL, (2004) NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1. Cell 119, 803-814. (Pubitemid 40017687)
-
(2004)
Cell
, vol.119
, Issue.6
, pp. 803-814
-
-
Kim, M.Y.1
Mauro, S.2
Gevry, N.3
Lis, J.T.4
Kraus, W.L.5
-
111
-
-
0022363877
-
Structure of the two distinct types of minichromosomes that are assembled on DNA injected in Xenopus oocytes
-
Ryoji M, &, Worcel A, (1985) Structure of the two distinct types of minichromosomes that are assembled on DNA injected in Xenopus oocytes. Cell 40, 923-932. (Pubitemid 15240296)
-
(1985)
Cell
, vol.40
, Issue.4
, pp. 923-932
-
-
Ryoji, M.1
Worcel, A.2
-
112
-
-
0018134224
-
Fractionation of hen oviduct chromatin into transcriptionally active and inactive regions after selective micrococcal nuclease digestion
-
Bloom KS, &, Anderson JN, (1978) Fractionation of hen oviduct chromatin into transcriptionally active and inactive regions after selective micrococcal nuclease digestion. Cell 15, 141-150. (Pubitemid 9027518)
-
(1978)
Cell
, vol.15
, Issue.1
, pp. 141-150
-
-
Bloom, K.S.1
Anderson, J.N.2
-
113
-
-
0020479282
-
Histone acetylation increases the solubility of chromatin and occurs sequentially over most of the chromatin. A novel model for the biological role of histone acetylation
-
Perry M, &, Chalkley R, (1982) Histone acetylation increases the solubility of chromatin and occurs sequentially over most of the chromatin. A novel model for the biological role of histone acetylation. J Biol Chem 257, 7336-7347.
-
(1982)
J Biol Chem
, vol.257
, pp. 7336-7347
-
-
Perry, M.1
Chalkley, R.2
-
114
-
-
0022049377
-
Transcription occurs at a nucleoskeleton
-
Jackson DA, &, Cook PR, (1985) Transcription occurs at a nucleoskeleton. EMBO J 4, 919-925.
-
(1985)
EMBO J
, vol.4
, pp. 919-925
-
-
Jackson, D.A.1
Cook, P.R.2
-
115
-
-
0034062751
-
Specialized transcription factories within mammalian nuclei
-
Pombo A, Jones E, Iborra FJ, Kimura H, Sugaya K, Cook PR, &, Jackson DA, (2000) Specialized transcription factories within mammalian nuclei. Crit Rev Eukaryot Gene Expr 10, 21-29. (Pubitemid 30266172)
-
(2000)
Critical Reviews in Eukaryotic Gene Expression
, vol.10
, Issue.1
, pp. 21-29
-
-
Pombo, A.1
Jones, E.2
Iborra, F.J.3
Kimura, H.4
Sugaya, K.5
Cook, P.R.6
Jackson, D.A.7
-
116
-
-
35648930913
-
The role of transcription factories in large-scale structure and dynamics of interphase chromatin
-
DOI 10.1016/j.semcdb.2007.08.008, PII S1084952107001231, Membrane Lipid Microdomains: Roles in Signalling and Disease and 3D Chromatin
-
Sexton T, Umlauf D, Kurukuti S, &, Fraser P, (2007) The role of transcription factories in large-scale structure and dynamics of interphase chromatin. Semin Cell Dev Biol 18, 691-697. (Pubitemid 350026432)
-
(2007)
Seminars in Cell and Developmental Biology
, vol.18
, Issue.5
, pp. 691-697
-
-
Sexton, T.1
Umlauf, D.2
Kurukuti, S.3
Fraser, P.4
-
117
-
-
0019830601
-
RNA is synthesized at the nuclear cage
-
DOI 10.1038/292552a0
-
Jackson DA, McCready SJ, &, Cook PR, (1981) RNA is synthesized at the nuclear cage. Nature 292, 552-555. (Pubitemid 11023992)
-
(1981)
Nature
, vol.292
, Issue.5823
, pp. 552-555
-
-
Jackson, D.A.1
McCready, S.J.2
Cook, P.R.3
-
118
-
-
0020077227
-
The ovalbumin gene is associated with the nuclear matrix of chicken oviduct cells
-
Robinson SI, Nelkin BD, &, Vogelstein B, (1982) The ovalbumin gene is associated with the nuclear matrix of chicken oviduct cells. Cell 28, 99-106. (Pubitemid 12223312)
-
(1982)
Cell
, vol.28
, Issue.1
, pp. 99-106
-
-
Robinson, S.I.1
Nelkin, B.D.2
Vogelstein, B.3
-
119
-
-
0021046130
-
Actively transcribed genes are associated with the nuclear matrix
-
Ciejek EM, Tsai MJ, &, O'Malley BW, (1983) Actively transcribed genes are associated with the nuclear matrix. Nature 306, 607-609. (Pubitemid 14203832)
-
(1983)
Nature
, vol.306
, Issue.5943
, pp. 607-609
-
-
Ciejek, E.M.1
Ming Jer Tsai2
O'Malley, B.W.3
-
120
-
-
32444434989
-
Histone H4-K16 acetylation controls chromatin structure and protein interactions
-
DOI 10.1126/science.1124000
-
Shogren-Knaak M, Ishii H, Sun JM, Pazin MJ, Davie JR, &, Peterson CL, (2006) Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science 311, 844-847. (Pubitemid 43228847)
-
(2006)
Science
, vol.311
, Issue.5762
, pp. 844-847
-
-
Shogren-Knaak, M.1
Ishii, H.2
Sun, J.-M.3
Pazin, M.J.4
Davie, J.R.5
Peterson, C.L.6
-
121
-
-
32444436223
-
Protein tail modification opens way for gene activity
-
Marx J, (2006) Molecular biology. Protein tail modification opens way for gene activity. Science 311, 757. (Pubitemid 43228811)
-
(2006)
Science
, vol.311
, Issue.5762
, pp. 757
-
-
Marx, J.1
-
122
-
-
79551615762
-
Structure and binding of the H4 histone tail and the effects of lysine 16 acetylation
-
Yang D, &, Arya G, (2011) Structure and binding of the H4 histone tail and the effects of lysine 16 acetylation. Phys Chem Chem Phys 13, 2911-2921.
-
(2011)
Phys Chem Chem Phys
, vol.13
, pp. 2911-2921
-
-
Yang, D.1
Arya, G.2
-
123
-
-
79953148278
-
The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association
-
Allahverdi A, Yang R, Korolev N, Fan Y, Davey CA, Liu CF, &, Nordenskiold L, (2011) The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association. Nucleic Acids Res 39, 1680-1691.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1680-1691
-
-
Allahverdi, A.1
Yang, R.2
Korolev, N.3
Fan, Y.4
Davey, C.A.5
Liu, C.F.6
Nordenskiold, L.7
-
124
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
DOI 10.1038/ng.154, PII NG154
-
Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, et al. (2008) Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 40, 897-903. (Pubitemid 351913645)
-
(2008)
Nature Genetics
, vol.40
, Issue.7
, pp. 897-903
-
-
Wang, Z.1
Zang, C.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.7
Roh, T.-Y.8
Peng, W.9
Zhang, M.Q.10
Zhao, K.11
-
125
-
-
17244368913
-
Genomic characterization reveals a simple histone H4 acetylation code
-
DOI 10.1073/pnas.0500136102
-
Dion MF, Altschuler SJ, Wu LF, &, Rando OJ, (2005) Genomic characterization reveals a simple histone H4 acetylation code. Proc Natl Acad Sci USA 102, 5501-5506. (Pubitemid 40530287)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.15
, pp. 5501-5506
-
-
Dion, M.F.1
Altschuler, S.J.2
Wu, L.F.3
Rando, O.J.4
-
126
-
-
0033866836
-
Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila
-
Akhtar A, &, Becker PB, (2000) Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila. Mol Cell 5, 367-375. (Pubitemid 30628093)
-
(2000)
Molecular Cell
, vol.5
, Issue.2
, pp. 367-375
-
-
Akhtar, A.1
Becker, P.B.2
-
127
-
-
0036208153
-
Modulation of ISWI function by site-specific histone acetylation
-
DOI 10.1093/embo-reports/kvf056
-
Corona DF, Clapier CR, Becker PB, &, Tamkun JW, (2002) Modulation of ISWI function by site-specific histone acetylation. EMBO Rep 3, 242-247. (Pubitemid 34269517)
-
(2002)
EMBO Reports
, vol.3
, Issue.3
, pp. 242-247
-
-
Corona, D.F.V.1
Clapier, C.R.2
Becker, P.B.3
Tamkun, J.W.4
-
128
-
-
77954682594
-
New perspectives for the regulation of acetyltransferase MOF
-
Li X, &, Dou Y, (2010) New perspectives for the regulation of acetyltransferase MOF. Epigenetics 5, 185-188.
-
(2010)
Epigenetics
, vol.5
, pp. 185-188
-
-
Li, X.1
Dou, Y.2
-
129
-
-
70350012477
-
Two mammalian MOF complexes regulate transcription activation by distinct mechanisms
-
Li X, Wu L, Corsa CA, Kunkel S, &, Dou Y, (2009) Two mammalian MOF complexes regulate transcription activation by distinct mechanisms. Mol Cell 36, 290-301.
-
(2009)
Mol Cell
, vol.36
, pp. 290-301
-
-
Li, X.1
Wu, L.2
Corsa, C.A.3
Kunkel, S.4
Dou, Y.5
-
130
-
-
69449102464
-
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
-
Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, &, Zhao K, (2009) Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 138, 1019-1031.
-
(2009)
Cell
, vol.138
, pp. 1019-1031
-
-
Wang, Z.1
Zang, C.2
Cui, K.3
Schones, D.E.4
Barski, A.5
Peng, W.6
Zhao, K.7
-
131
-
-
77954360144
-
MOF and histone H4 acetylation at lysine 16 are critical for DNA damage response and double-strand break repair
-
Sharma GG, So S, Gupta A, Kumar R, Cayrou C, Avvakumov N, Bhadra U, Pandita RK, Porteus MH, Chen DJ, et al. (2010) MOF and histone H4 acetylation at lysine 16 are critical for DNA damage response and double-strand break repair. Mol Cell Biol 30, 3582-3595.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 3582-3595
-
-
Sharma, G.G.1
So, S.2
Gupta, A.3
Kumar, R.4
Cayrou, C.5
Avvakumov, N.6
Bhadra, U.7
Pandita, R.K.8
Porteus, M.H.9
Chen, D.J.10
-
132
-
-
70349557613
-
MYST family histone acetyltransferases take center stage in stem cells and development
-
Voss AK, &, Thomas T, (2009) MYST family histone acetyltransferases take center stage in stem cells and development. Bioessays 31, 1050-1061.
-
(2009)
Bioessays
, vol.31
, pp. 1050-1061
-
-
Voss, A.K.1
Thomas, T.2
-
133
-
-
37549014206
-
The mammalian ortholog of Drosophila MOF that acetylates histone H4 lysine 16 is essential for embryogenesis and oncogenesis
-
Gupta A, Guerin-Peyrou TG, Sharma GG, Park C, Agarwal M, Ganju RK, Pandita S, Choi K, Sukumar S, Pandita RK, et al. (2008) The mammalian ortholog of Drosophila MOF that acetylates histone H4 lysine 16 is essential for embryogenesis and oncogenesis. Mol Cell Biol 28, 397-409.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 397-409
-
-
Gupta, A.1
Guerin-Peyrou, T.G.2
Sharma, G.G.3
Park, C.4
Agarwal, M.5
Ganju, R.K.6
Pandita, S.7
Choi, K.8
Sukumar, S.9
Pandita, R.K.10
-
134
-
-
49449109503
-
Mof (MYST1 or KAT8) is essential for progression of embryonic development past the blastocyst stage and required for normal chromatin architecture
-
Thomas T, Dixon MP, Kueh AJ, &, Voss AK, (2008) Mof (MYST1 or KAT8) is essential for progression of embryonic development past the blastocyst stage and required for normal chromatin architecture. Mol Cell Biol 28, 5093-5105.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 5093-5105
-
-
Thomas, T.1
Dixon, M.P.2
Kueh, A.J.3
Voss, A.K.4
-
135
-
-
15744369742
-
Characterization of the yeast trimeric-SAS acetyltransferase complex
-
DOI 10.1074/jbc.M500276200
-
Shia WJ, Osada S, Florens L, Swanson SK, Washburn MP, &, Workman JL, (2005) Characterization of the yeast trimeric-SAS acetyltransferase complex. J Biol Chem 280, 11987-11994. (Pubitemid 40418516)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.12
, pp. 11987-11994
-
-
Shia, W.-J.1
Osada, S.2
Florens, L.3
Swanson, S.K.4
Washburn, M.P.5
Workman, J.L.6
-
136
-
-
29544444195
-
ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation
-
DOI 10.1016/j.molcel.2005.12.007, PII S1097276505018496
-
Doyon Y, Cayrou C, Ullah M, Landry AJ, Cote V, Selleck W, Lane WS, Tan S, Yang XJ, &, Cote J, (2006) ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation. Mol Cell 21, 51-64. (Pubitemid 43017848)
-
(2006)
Molecular Cell
, vol.21
, Issue.1
, pp. 51-64
-
-
Doyon, Y.1
Cayrou, C.2
Ullah, M.3
Landry, A.-J.4
Cote, V.5
Selleck, W.6
Lane, W.S.7
Tan, S.8
Yang, X.-J.9
Cote, J.10
-
137
-
-
20444375490
-
Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription
-
DOI 10.1016/j.molcel.2005.05.009, PII S1097276505013158
-
Morillon A, Karabetsou N, Nair A, &, Mellor J, (2005) Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription. Mol Cell 18, 723-734. (Pubitemid 40804807)
-
(2005)
Molecular Cell
, vol.18
, Issue.6
, pp. 723-734
-
-
Morillon, A.1
Karabetsou, N.2
Nair, A.3
Mellor, J.4
-
138
-
-
34547896549
-
The MYST family of histone acetyltransferases and their intimate links to cancer
-
DOI 10.1038/sj.onc.1210608, PII 1210608
-
Avvakumov N, &, Cote J, (2007) The MYST family of histone acetyltransferases and their intimate links to cancer. Oncogene 26, 5395-5407. (Pubitemid 47255922)
-
(2007)
Oncogene
, vol.26
, Issue.37
, pp. 5395-5407
-
-
Avvakumov, N.1
Cote, J.2
-
139
-
-
58649102691
-
ING4 mediates crosstalk between histone H3 K4 trimethylation and H3 acetylation to attenuate cellular transformation
-
Hung T, Binda O, Champagne KS, Kuo AJ, Johnson K, Chang HY, Simon MD, Kutateladze TG, &, Gozani O, (2009) ING4 mediates crosstalk between histone H3 K4 trimethylation and H3 acetylation to attenuate cellular transformation. Mol Cell 33, 248-256.
-
(2009)
Mol Cell
, vol.33
, pp. 248-256
-
-
Hung, T.1
Binda, O.2
Champagne, K.S.3
Kuo, A.J.4
Johnson, K.5
Chang, H.Y.6
Simon, M.D.7
Kutateladze, T.G.8
Gozani, O.9
-
140
-
-
58649113419
-
HBO1 HAT complexes target chromatin throughout gene coding regions via multiple PHD finger interactions with histone H3 tail
-
Saksouk N, Avvakumov N, Champagne KS, Hung T, Doyon Y, Cayrou C, Paquet E, Ullah M, Landry AJ, Cote V, et al. (2009) HBO1 HAT complexes target chromatin throughout gene coding regions via multiple PHD finger interactions with histone H3 tail. Mol Cell 33, 257-265.
-
(2009)
Mol Cell
, vol.33
, pp. 257-265
-
-
Saksouk, N.1
Avvakumov, N.2
Champagne, K.S.3
Hung, T.4
Doyon, Y.5
Cayrou, C.6
Paquet, E.7
Ullah, M.8
Landry, A.J.9
Cote, V.10
-
141
-
-
1542358194
-
Dynamics of nuclear receptor movement and transcription
-
DOI 10.1016/j.bbaexp.2003.09.016, PII S0167478103002756
-
Hager GL, Nagaich AK, Johnson TA, Walker DA, &, John S, (2004) Dynamics of nuclear receptor movement and transcription. Biochim Biophys Acta 1677, 46-51. (Pubitemid 38327087)
-
(2004)
Biochimica et Biophysica Acta - Gene Structure and Expression
, vol.1677
, Issue.1-3
, pp. 46-51
-
-
Hager, G.L.1
Nagaich, A.K.2
Johnson, T.A.3
Walker, D.A.4
John, S.5
-
142
-
-
68049087935
-
Time's up: Bursting out of transcription
-
Ford E, &, Thanos D, (2009) Time's up: bursting out of transcription. Cell 138, 430-432.
-
(2009)
Cell
, vol.138
, pp. 430-432
-
-
Ford, E.1
Thanos, D.2
-
143
-
-
2642544592
-
Estrogen receptor-α directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
-
DOI 10.1016/S0092-8674(03)00934-6
-
Metivier R, Penot G, Hubner MR, Reid G, Brand H, Kos M, &, Gannon F, (2003) Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell 115, 751-763. (Pubitemid 38030303)
-
(2003)
Cell
, vol.115
, Issue.6
, pp. 751-763
-
-
Metivier, R.1
Penot, G.2
Hubner, M.R.3
Reid, G.4
Brand, H.5
Kos, M.6
Gannon, F.7
-
144
-
-
1942502820
-
Rapid periodic binding and displacement of the glucocorticoid receptor during chromatin remodeling
-
DOI 10.1016/S1097-2765(04)00178-9, PII S1097276504001789
-
Nagaich AK, Walker DA, Wolford R, &, Hager GL, (2004) Rapid periodic binding and displacement of the glucocorticoid receptor during chromatin remodeling. Mol Cell 14, 163-174. (Pubitemid 38519068)
-
(2004)
Molecular Cell
, vol.14
, Issue.2
, pp. 163-174
-
-
Nagaich, A.K.1
Walker, D.A.2
Wolford, R.3
Hager, G.L.4
-
145
-
-
68049084857
-
Population-level transcription cycles derive from stochastic timing of single-cell transcription
-
Degenhardt T, Rybakova KN, Tomaszewska A, Mone MJ, Westerhoff HV, Bruggeman FJ, &, Carlberg C, (2009) Population-level transcription cycles derive from stochastic timing of single-cell transcription. Cell 138, 489-501.
-
(2009)
Cell
, vol.138
, pp. 489-501
-
-
Degenhardt, T.1
Rybakova, K.N.2
Tomaszewska, A.3
Mone, M.J.4
Westerhoff, H.V.5
Bruggeman, F.J.6
Carlberg, C.7
-
146
-
-
79959312161
-
Control of nuclear receptor function by local chromatin structure
-
Wiench M, Miranda TB, &, Hager GL, (2011) Control of nuclear receptor function by local chromatin structure. FEBS J 278, 2211-2230.
-
(2011)
FEBS J
, vol.278
, pp. 2211-2230
-
-
Wiench, M.1
Miranda, T.B.2
Hager, G.L.3
-
147
-
-
33746403681
-
Controlling the Elongation Phase of Transcription with P-TEFb
-
DOI 10.1016/j.molcel.2006.06.014, PII S1097276506004291
-
Peterlin BM, &, Price DH, (2006) Controlling the elongation phase of transcription with P-TEFb. Mol Cell 23, 297-305. (Pubitemid 44128850)
-
(2006)
Molecular Cell
, vol.23
, Issue.3
, pp. 297-305
-
-
Peterlin, B.M.1
Price, D.H.2
-
148
-
-
0038374526
-
Transcriptional elongation by RNA polymerase II and histone methylation
-
DOI 10.1074/jbc.R300014200
-
Gerber M, &, Shilatifard A, (2003) Transcriptional elongation by RNA polymerase II and histone methylation. J Biol Chem 278, 26303-26306. (Pubitemid 36876764)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.29
, pp. 26303-26306
-
-
Gerber, M.1
Shilatifard, A.2
-
149
-
-
20444397430
-
Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF
-
DOI 10.1016/j.cell.2005.04.031, PII S0092867405004496
-
Dou Y, Milne TA, Tackett AJ, Smith ER, Fukuda A, Wysocka J, Allis CD, Chait BT, Hess JL, &, Roeder RG, (2005) Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. Cell 121, 873-885. (Pubitemid 40806419)
-
(2005)
Cell
, vol.121
, Issue.6
, pp. 873-885
-
-
Dou, Y.1
Milne, T.A.2
Tackett, A.J.3
Smith, E.R.4
Fukuda, A.5
Wysocka, J.6
Allis, C.D.7
Chait, B.T.8
Hess, J.L.9
Roeder, R.G.10
-
150
-
-
20444417108
-
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development
-
DOI 10.1016/j.cell.2005.03.036, PII S0092867405003557
-
Wysocka J, Swigut T, Milne TA, Dou Y, Zhang X, Burlingame AL, Roeder RG, Brivanlou AH, &, Allis CD, (2005) WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell 121, 859-872. (Pubitemid 40806418)
-
(2005)
Cell
, vol.121
, Issue.6
, pp. 859-872
-
-
Wysocka, J.1
Swigut, T.2
Milne, T.A.3
Dou, Y.4
Zhang, X.5
Burlingame, A.L.6
Roeder, R.G.7
Brivanlou, A.H.8
Allis, C.D.9
-
151
-
-
70449641057
-
Progression through the RNA polymerase II CTD cycle
-
Buratowski S, (2009) Progression through the RNA polymerase II CTD cycle. Mol Cell 36, 541-546.
-
(2009)
Mol Cell
, vol.36
, pp. 541-546
-
-
Buratowski, S.1
-
152
-
-
77951920690
-
C-Myc regulates transcriptional pause release
-
Rahl PB, Lin CY, Seila AC, Flynn RA, McCuine S, Burge CB, Sharp PA, &, Young RA, (2010) c-Myc regulates transcriptional pause release. Cell 141, 432-445.
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
Lin, C.Y.2
Seila, A.C.3
Flynn, R.A.4
McCuine, S.5
Burge, C.B.6
Sharp, P.A.7
Young, R.A.8
-
153
-
-
70149112313
-
Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation
-
Zippo A, Serafini R, Rocchigiani M, Pennacchini S, Krepelova A, &, Oliviero S, (2009) Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation. Cell 138, 1122-1136.
-
(2009)
Cell
, vol.138
, pp. 1122-1136
-
-
Zippo, A.1
Serafini, R.2
Rocchigiani, M.3
Pennacchini, S.4
Krepelova, A.5
Oliviero, S.6
-
154
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
DOI 10.1016/j.cell.2005.10.023, PII S0092867405011566
-
Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK, Shia WJ, Anderson S, Yates J, Washburn MP, et al. (2005) Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123, 581-592. (Pubitemid 41608462)
-
(2005)
Cell
, vol.123
, Issue.4
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.-J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
Workman, J.L.11
-
155
-
-
29144468972
-
Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to pol II elongation
-
DOI 10.1016/j.molcel.2005.11.021, PII S1097276505018083
-
Joshi AA, &, Struhl K, (2005) Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. Mol Cell 20, 971-978. (Pubitemid 41814885)
-
(2005)
Molecular Cell
, vol.20
, Issue.6
, pp. 971-978
-
-
Joshi, A.A.1
Struhl, K.2
-
156
-
-
65549095078
-
Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription
-
Li B, Jackson J, Simon MD, Fleharty B, Gogol M, Seidel C, Workman JL, &, Shilatifard A, (2009) Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription. J Biol Chem 284, 7970-7976.
-
(2009)
J Biol Chem
, vol.284
, pp. 7970-7976
-
-
Li, B.1
Jackson, J.2
Simon, M.D.3
Fleharty, B.4
Gogol, M.5
Seidel, C.6
Workman, J.L.7
Shilatifard, A.8
-
157
-
-
27744587302
-
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
-
DOI 10.1016/j.cell.2005.10.025, PII S0092867405011591
-
Keogh MC, Kurdistani SK, Morris SA, Ahn SH, Podolny V, Collins SR, Schuldiner M, Chin K, Punna T, Thompson NJ, et al. (2005) Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123, 593-605. (Pubitemid 41608463)
-
(2005)
Cell
, vol.123
, Issue.4
, pp. 593-605
-
-
Keogh, M.-C.1
Kurdistani, S.K.2
Morris, S.A.3
Ahn, S.H.4
Podolny, V.5
Collins, S.R.6
Schuldiner, M.7
Chin, K.8
Punna, T.9
Thompson, N.J.10
Boone, C.11
Emili, A.12
Weissman, J.S.13
Hughes, T.R.14
Strahl, B.D.15
Grunstein, M.16
Greenblatt, J.F.17
Buratowski, S.18
Krogan, N.J.19
-
159
-
-
37149047905
-
Localized H3K36 methylation states define histone H4K16 acetylation during transcriptional elongation in Drosophila
-
DOI 10.1038/sj.emboj.7601926, PII 7601926
-
Bell O, Wirbelauer C, Hild M, Scharf AN, Schwaiger M, MacAlpine DM, Zilbermann F, van Leeuwen F, Bell SP, Imhof A, et al. (2007) Localized H3K36 methylation states define histone H4K16 acetylation during transcriptional elongation in Drosophila. EMBO J 26, 4974-4984. (Pubitemid 350261289)
-
(2007)
EMBO Journal
, vol.26
, Issue.24
, pp. 4974-4984
-
-
Bell, O.1
Wirbelauer, C.2
Hild, M.3
Scharf, A.N.D.4
Schwaiger, M.5
MacAlpine, D.M.6
Zilbermann, F.7
Van Leeuwen, F.8
Bell, S.P.9
Imhof, A.10
Garza, D.11
Peters, A.H.F.M.12
Schubeler, D.13
-
160
-
-
64249111489
-
Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5′ transcribed regions
-
Kim T, &, Buratowski S, (2009) Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5′ transcribed regions. Cell 137, 259-272.
-
(2009)
Cell
, vol.137
, pp. 259-272
-
-
Kim, T.1
Buratowski, S.2
-
161
-
-
33845968873
-
Gcn5 Promotes Acetylation, Eviction, and Methylation of Nucleosomes in Transcribed Coding Regions
-
DOI 10.1016/j.molcel.2006.11.020, PII S1097276506008148
-
Govind CK, Zhang F, Qiu H, Hofmeyer K, &, Hinnebusch AG, (2007) Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions. Mol Cell 25, 31-42. (Pubitemid 46049060)
-
(2007)
Molecular Cell
, vol.25
, Issue.1
, pp. 31-42
-
-
Govind, C.K.1
Zhang, F.2
Qiu, H.3
Hofmeyer, K.4
Hinnebusch, A.G.5
-
162
-
-
34547879583
-
The SAGA continues: Expanding the cellular role of a transcriptional co-activator complex
-
DOI 10.1038/sj.onc.1210603, PII 1210603
-
Baker SP, &, Grant PA, (2007) The SAGA continues: expanding the cellular role of a transcriptional co-activator complex. Oncogene 26, 5329-5340. (Pubitemid 47255919)
-
(2007)
Oncogene
, vol.26
, Issue.37
, pp. 5329-5340
-
-
Baker, S.P.1
Grant, P.A.2
-
163
-
-
71949105211
-
NuA4 lysine acetyltransferase Esa1 is targeted to coding regions and stimulates transcription elongation with Gcn5
-
Ginsburg DS, Govind CK, &, Hinnebusch AG, (2009) NuA4 lysine acetyltransferase Esa1 is targeted to coding regions and stimulates transcription elongation with Gcn5. Mol Cell Biol 29, 6473-6487.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 6473-6487
-
-
Ginsburg, D.S.1
Govind, C.K.2
Hinnebusch, A.G.3
-
164
-
-
70149118362
-
Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome
-
Hong SW, Hong SM, Yoo JW, Lee YC, Kim S, Lis JT, &, Lee DK, (2009) Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome. Proc Natl Acad Sci USA 106, 14276-14280.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 14276-14280
-
-
Hong, S.W.1
Hong, S.M.2
Yoo, J.W.3
Lee, Y.C.4
Kim, S.5
Lis, J.T.6
Lee, D.K.7
-
165
-
-
2942518343
-
Mapping global histone acetylation patterns to gene expression
-
DOI 10.1016/j.cell.2004.05.023, PII S0092867404005367
-
Kurdistani SK, Tavazoie S, &, Grunstein M, (2004) Mapping global histone acetylation patterns to gene expression. Cell 117, 721-733. (Pubitemid 38748889)
-
(2004)
Cell
, vol.117
, Issue.6
, pp. 721-733
-
-
Kurdistani, S.K.1
Tavazoie, S.2
Grunstein, M.3
-
166
-
-
0034839973
-
Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin
-
DOI 10.1016/S1097-2765(01)00301-X
-
Suka N, Suka Y, Carmen AA, Wu J, &, Grunstein M, (2001) Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin. Mol Cell 8, 473-479. (Pubitemid 32831564)
-
(2001)
Molecular Cell
, vol.8
, Issue.2
, pp. 473-479
-
-
Suka, N.1
Suka, Y.2
Carmen, A.A.3
Wu, J.4
Grunstein, M.5
-
167
-
-
0037111879
-
Requirement of Hos2 histone deacetylase for gene activity in yeast
-
DOI 10.1126/science.1077790
-
Wang A, Kurdistani SK, &, Grunstein M, (2002) Requirement of Hos2 histone deacetylase for gene activity in yeast. Science 298, 1412-1414. (Pubitemid 35346139)
-
(2002)
Science
, vol.298
, Issue.5597
, pp. 1412-1414
-
-
Wang, A.1
Kurdistani, S.K.2
Grunstein, M.3
-
168
-
-
34250305505
-
Elongator complex: how many roles does it play?
-
DOI 10.1016/j.ceb.2007.04.005, PII S0955067407000579, Nucleus and Gene Expression
-
Svejstrup JQ, (2007) Elongator complex: how many roles does it play? Curr Opin Cell Biol 19, 331-336. (Pubitemid 46908882)
-
(2007)
Current Opinion in Cell Biology
, vol.19
, Issue.3
, pp. 331-336
-
-
Svejstrup, J.Q.1
-
169
-
-
33751527233
-
Yng1 PHD Finger Binding to H3 Trimethylated at K4 Promotes NuA3 HAT Activity at K14 of H3 and Transcription at a Subset of Targeted ORFs
-
DOI 10.1016/j.molcel.2006.10.026, PII S1097276506007325
-
Taverna SD, Ilin S, Rogers RS, Tanny JC, Lavender H, Li H, Baker L, Boyle J, Blair LP, Chait BT, et al. (2006) Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at
-
(2006)
Molecular Cell
, vol.24
, Issue.5
, pp. 785-796
-
-
Taverna, S.D.1
Ilin, S.2
Rogers, R.S.3
Tanny, J.C.4
Lavender, H.5
Li, H.6
Baker, L.7
Boyle, J.8
Blair, L.P.9
Chait, BrianT.10
Patel, D.J.11
Aitchison, J.D.12
Tackett, A.J.13
Allis, C.D.14
-
170
-
-
0037133562
-
Elongator is a histone H3 and H4 acetyltransferase important for normal histone acetylation levels in vivo
-
DOI 10.1073/pnas.022042899
-
Winkler GS, Kristjuhan A, Erdjument-Bromage H, Tempst P, &, Svejstrup JQ, (2002) Elongator is a histone H3 and H4 acetyltransferase important for normal histone acetylation levels in vivo. Proc Natl Acad Sci USA 99, 3517-3522. (Pubitemid 34252140)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.6
, pp. 3517-3522
-
-
Winkler, G.S.1
Kristjuhan, A.2
Erdjument-Bromage, H.3
Tempst, P.4
Svejstrup, J.Q.5
-
171
-
-
20044367838
-
The Elp3 subunit of human Elongator complex is functionally similar to its counterpart in yeast
-
DOI 10.1007/s00438-005-1120-2
-
Li F, Lu J, Han Q, Zhang G, &, Huang B, (2005) The Elp3 subunit of human Elongator complex is functionally similar to its counterpart in yeast. Mol Genet Genomics 273, 264-272. (Pubitemid 40768513)
-
(2005)
Molecular Genetics and Genomics
, vol.273
, Issue.3
, pp. 264-272
-
-
Li, F.1
Lu, J.2
Han, Q.3
Zhang, G.4
Huang, B.5
-
172
-
-
34249099730
-
Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin
-
DOI 10.1126/science.1139004
-
Li B, Gogol M, Carey M, Lee D, Seidel C, &, Workman JL, (2007) Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin. Science 316, 1050-1054. (Pubitemid 46799495)
-
(2007)
Science
, vol.316
, Issue.5827
, pp. 1050-1054
-
-
Li, B.1
Gogol, M.2
Carey, M.3
Lee, D.4
Seidel, C.5
Workman, J.L.6
-
173
-
-
48249148195
-
Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation
-
Williams SK, Truong D, &, Tyler JK, (2008) Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation. Proc Natl Acad Sci USA 105, 9000-9005.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 9000-9005
-
-
Williams, S.K.1
Truong, D.2
Tyler, J.K.3
-
174
-
-
70349765673
-
A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation
-
Neumann H, Hancock SM, Buning R, Routh A, Chapman L, Somers J, Owen-Hughes T, van Noort J, Rhodes D, &, Chin JW, (2009) A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation. Mol Cell 36, 153-163.
-
(2009)
Mol Cell
, vol.36
, pp. 153-163
-
-
Neumann, H.1
Hancock, S.M.2
Buning, R.3
Routh, A.4
Chapman, L.5
Somers, J.6
Owen-Hughes, T.7
Van Noort, J.8
Rhodes, D.9
Chin, J.W.10
-
175
-
-
0023663887
-
Position-independent, high-level expression of the human beta-globin gene in transgenic mice
-
Grosveld F, van Assendelft GB, Greaves DR, &, Kollias G, (1987) Position-independent, high-level expression of the human beta-globin gene in transgenic mice. Cell 51, 975-985.
-
(1987)
Cell
, vol.51
, pp. 975-985
-
-
Grosveld, F.1
Van Assendelft, G.B.2
Greaves, D.R.3
Kollias, G.4
-
176
-
-
0032185226
-
The β-globin LCR is not necessary for an open chromatin structure or developmentally regulated transcription of the native mouse β-globin locus
-
Epner E, Reik A, Cimbora D, Telling A, Bender MA, Fiering S, Enver T, Martin DI, Kennedy M, Keller G, et al. (1998) The beta-globin LCR is not necessary for an open chromatin structure or developmentally regulated transcription of the native mouse beta-globin locus. Mol Cell 2, 447-455. (Pubitemid 128381297)
-
(1998)
Molecular Cell
, vol.2
, Issue.4
, pp. 447-455
-
-
Epner, E.1
Reik, A.2
Cimbora, D.3
Telling, A.4
Bender, M.A.5
Fiering, S.6
Enver, T.7
Martin, D.I.K.8
Kennedy, M.9
Keller, G.10
Groudine, M.11
-
177
-
-
0028138645
-
Dissection of the locus control function located on the chicken lysozyme gene domain in transgenic mice
-
Bonifer C, Yannoutsos N, Kruger G, Grosveld F, &, Sippel AE, (1994) Dissection of the locus control function located on the chicken lysozyme gene domain in transgenic mice. Nucleic Acids Res 22, 4202-4210. (Pubitemid 24322725)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.20
, pp. 4202-4210
-
-
Bonifer, C.1
Yannoutsos, N.2
Kruger, G.3
Grosveld, F.4
Sippel, A.E.5
-
178
-
-
0036898580
-
Long-range chromatin regulatory interactions in vivo
-
DOI 10.1038/ng1051
-
Carter D, Chakalova L, Osborne CS, Dai YF, &, Fraser P, (2002) Long-range chromatin regulatory interactions in vivo. Nat Genet 32, 623-626. (Pubitemid 35435174)
-
(2002)
Nature Genetics
, vol.32
, Issue.4
, pp. 623-626
-
-
Carter, D.1
Chakalova, L.2
Osborne, C.S.3
Dai, Y.-F.4
Fraser, P.5
-
179
-
-
0042880630
-
Spatial organization of gene expression: The active chromatin hub
-
DOI 10.1023/A:1024922626726
-
de Laat W, &, Grosveld F, (2003) Spatial organization of gene expression: the active chromatin hub. Chromosome Res 11, 447-459. (Pubitemid 37041205)
-
(2003)
Chromosome Research
, vol.11
, Issue.5
, pp. 447-459
-
-
De Laat, W.1
Grosveld, F.2
-
180
-
-
0141730403
-
The β-globin nuclear compartment in development and erythroid differentiation
-
DOI 10.1038/ng1244
-
Palstra RJ, Tolhuis B, Splinter E, Nijmeijer R, Grosveld F, &, de Laat W, (2003) The beta-globin nuclear compartment in development and erythroid differentiation. Nat Genet 35, 190-194. (Pubitemid 37187640)
-
(2003)
Nature Genetics
, vol.35
, Issue.2
, pp. 190-194
-
-
Palstra, R.-J.1
Tolhuis, B.2
Splinter, E.3
Nijmeijer, R.4
Grosveld, F.5
De Laat, W.6
-
181
-
-
5444237577
-
Long-range intrachromosomal interactions in the T helper type 2 cytokine locus
-
DOI 10.1038/ni1115
-
Spilianakis CG, &, Flavell RA, (2004) Long-range intrachromosomal interactions in the T helper type 2 cytokine locus. Nat Immunol 5, 1017-1027. (Pubitemid 41057721)
-
(2004)
Nature Immunology
, vol.5
, Issue.10
, pp. 1017-1027
-
-
Spilianakis, C.G.1
Flavell, R.A.2
-
182
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
DOI 10.1038/ng1423
-
Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, Debrand E, Goyenechea B, Mitchell JA, Lopes S, Reik W, et al. (2004) Active genes dynamically colocalize to shared sites of ongoing transcription. Nat Genet 36, 1065-1071. (Pubitemid 41184467)
-
(2004)
Nature Genetics
, vol.36
, Issue.10
, pp. 1065-1071
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
Debrand, E.6
Goyenechea, B.7
Mitchell, J.A.8
Lopes, S.9
Reik, W.10
Fraser, P.11
-
183
-
-
38149133051
-
Transcription factories are nuclear subcompartments that remain in the absence of transcription
-
Mitchell JA, &, Fraser P, (2008) Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev 22, 20-25.
-
(2008)
Genes Dev
, vol.22
, pp. 20-25
-
-
Mitchell, J.A.1
Fraser, P.2
-
184
-
-
0027499230
-
Visualization of focal sites of transcription within human nuclei
-
Jackson DA, Hassan AB, Errington RJ, &, Cook PR, (1993) Visualization of focal sites of transcription within human nuclei. EMBO J 12, 1059-1065. (Pubitemid 23095855)
-
(1993)
EMBO Journal
, vol.12
, Issue.3
, pp. 1059-1065
-
-
Jackson, D.A.1
Hassan, A.B.2
Errington, R.J.3
Cook, P.R.4
-
185
-
-
0029051646
-
Transcription complex stability and chromatin dynamics in vivo
-
Wijgerde M, Grosveld F, &, Fraser P, (1995) Transcription complex stability and chromatin dynamics in vivo. Nature 377, 209-213.
-
(1995)
Nature
, vol.377
, pp. 209-213
-
-
Wijgerde, M.1
Grosveld, F.2
Fraser, P.3
-
186
-
-
0026482145
-
Transcription of the hypersensitive site HS2 enhancer in erythroid cells
-
Tuan D, Kong S, &, Hu K, (1992) Transcription of the hypersensitive site HS2 enhancer in erythroid cells. Proc Natl Acad Sci USA 89, 11219-11223.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 11219-11223
-
-
Tuan, D.1
Kong, S.2
Hu, K.3
-
187
-
-
0022374773
-
Cμ-Containing transcripts initiate heterogeneously within the IgH enhancer region and contain a novel 5'-nontranslatable exon
-
DOI 10.1038/318475a0
-
Lennon GG, &, Perry RP, (1985) C mu-containing transcripts initiate heterogeneously within the IgH enhancer region and contain a novel 5′-nontranslatable exon. Nature 318, 475-478. (Pubitemid 16195850)
-
(1985)
Nature
, vol.318
, Issue.6045
, pp. 475-478
-
-
Lennon, G.C.1
Perry, R.P.2
-
188
-
-
33746423865
-
Locus Control Region Transcription Plays an Active Role in Long-Range Gene Activation
-
DOI 10.1016/j.molcel.2006.05.041, PII S1097276506003856
-
Ho Y, Elefant F, Liebhaber SA, &, Cooke NE, (2006) Locus control region transcription plays an active role in long-range gene activation. Mol Cell 23, 365-375. (Pubitemid 44128843)
-
(2006)
Molecular Cell
, vol.23
, Issue.3
, pp. 365-375
-
-
Ho, Y.1
Elefant, F.2
Liebhaber, S.A.3
Cooke, N.E.4
-
189
-
-
55549098872
-
Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs
-
Hirota K, Miyoshi T, Kugou K, Hoffman CS, Shibata T, &, Ohta K, (2008) Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs. Nature 456, 130-134.
-
(2008)
Nature
, vol.456
, pp. 130-134
-
-
Hirota, K.1
Miyoshi, T.2
Kugou, K.3
Hoffman, C.S.4
Shibata, T.5
Ohta, K.6
-
190
-
-
0033853988
-
Intergenic transcription and developmental remodeling of chromatin subdomains in the human β-globin locus
-
Gribnau J, Diderich K, Pruzina S, Calzolari R, &, Fraser P, (2000) Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus. Mol Cell 5, 377-386. (Pubitemid 30628094)
-
(2000)
Molecular Cell
, vol.5
, Issue.2
, pp. 377-386
-
-
Gribnau, J.1
Diderich, K.2
Pruzina, S.3
Calzolari, R.4
Fraser, P.5
-
191
-
-
33748850103
-
Regulation of T cell receptor-alpha gene recombination by transcription
-
Abarrategui I, &, Krangel MS, (2006) Regulation of T cell receptor-alpha gene recombination by transcription. Nat Immunol 7, 1109-1115.
-
(2006)
Nat Immunol
, vol.7
, pp. 1109-1115
-
-
Abarrategui, I.1
Krangel, M.S.2
-
192
-
-
63449135035
-
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization
-
Field Y, Fondufe-Mittendorf Y, Moore IK, Mieczkowski P, Kaplan N, Lubling Y, Lieb JD, Widom J, &, Segal E, (2009) Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet 41, 438-445.
-
(2009)
Nat Genet
, vol.41
, pp. 438-445
-
-
Field, Y.1
Fondufe-Mittendorf, Y.2
Moore, I.K.3
Mieczkowski, P.4
Kaplan, N.5
Lubling, Y.6
Lieb, J.D.7
Widom, J.8
Segal, E.9
-
193
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, LeProust EM, Hughes TR, Lieb JD, Widom J, et al. (2009) The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458, 362-366.
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
Moore, I.K.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
Field, Y.6
Leproust, E.M.7
Hughes, T.R.8
Lieb, J.D.9
Widom, J.10
-
194
-
-
57149119464
-
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
-
Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, Sharon E, Lubling Y, Widom J, &, Segal E, (2008) Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol 4, e1000216.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Field, Y.1
Kaplan, N.2
Fondufe-Mittendorf, Y.3
Moore, I.K.4
Sharon, E.5
Lubling, Y.6
Widom, J.7
Segal, E.8
-
195
-
-
39749145198
-
Dynamic Regulation of Nucleosome Positioning in the Human Genome
-
DOI 10.1016/j.cell.2008.02.022, PII S0092867408002705
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, &, Zhao K, (2008) Dynamic regulation of nucleosome positioning in the human genome. Cell 132, 887-898. (Pubitemid 351312809)
-
(2008)
Cell
, vol.132
, Issue.5
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.-Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
196
-
-
65249117717
-
Transcriptional and epigenetic functions of histone variant H2A.Z
-
Draker R, &, Cheung P, (2009) Transcriptional and epigenetic functions of histone variant H2A.Z. Biochem Cell Biol 87, 19-25.
-
(2009)
Biochem Cell Biol
, vol.87
, pp. 19-25
-
-
Draker, R.1
Cheung, P.2
-
197
-
-
65249164132
-
Mechanisms that specify promoter nucleosome location and identity
-
Hartley PD, &, Madhani HD, (2009) Mechanisms that specify promoter nucleosome location and identity. Cell 137, 445-458.
-
(2009)
Cell
, vol.137
, pp. 445-458
-
-
Hartley, P.D.1
Madhani, H.D.2
-
198
-
-
78651510784
-
Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity
-
Papamichos-Chronakis M, Watanabe S, Rando OJ, &, Peterson CL, (2011) Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity. Cell 144, 200-213.
-
(2011)
Cell
, vol.144
, pp. 200-213
-
-
Papamichos-Chronakis, M.1
Watanabe, S.2
Rando, O.J.3
Peterson, C.L.4
-
199
-
-
68149158205
-
Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'
-
Henikoff S, (2009) Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'. Nat Genet 41, 865-866.
-
(2009)
Nat Genet
, vol.41
, pp. 865-866
-
-
Henikoff, S.1
-
200
-
-
68149150830
-
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, &, Felsenfeld G, (2009) H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41, 941-945.
-
(2009)
Nat Genet
, vol.41
, pp. 941-945
-
-
Jin, C.1
Zang, C.2
Wei, G.3
Cui, K.4
Peng, W.5
Zhao, K.6
Felsenfeld, G.7
-
201
-
-
66449128244
-
Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes
-
Tolstorukov MY, Kharchenko PV, Goldman JA, Kingston RE, &, Park PJ, (2009) Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes. Genome Res 19, 967-977.
-
(2009)
Genome Res
, vol.19
, pp. 967-977
-
-
Tolstorukov, M.Y.1
Kharchenko, P.V.2
Goldman, J.A.3
Kingston, R.E.4
Park, P.J.5
-
202
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
DOI 10.1101/gad.947102
-
Bird A, (2002) DNA methylation patterns and epigenetic memory. Genes Dev 16, 6-21. (Pubitemid 34049633)
-
(2002)
Genes and Development
, vol.16
, Issue.1
, pp. 6-21
-
-
Bird, A.1
-
203
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
DOI 10.1038/nrg2341, PII NRG2341
-
Suzuki MM, &, Bird A, (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 9, 465-476. (Pubitemid 351693975)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.6
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
204
-
-
67649669255
-
A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling
-
Ramirez-Carrozzi VR, Braas D, Bhatt DM, Cheng CS, Hong C, Doty KR, Black JC, Hoffmann A, Carey M, &, Smale ST, (2009) A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling. Cell 138, 114-128.
-
(2009)
Cell
, vol.138
, pp. 114-128
-
-
Ramirez-Carrozzi, V.R.1
Braas, D.2
Bhatt, D.M.3
Cheng, C.S.4
Hong, C.5
Doty, K.R.6
Black, J.C.7
Hoffmann, A.8
Carey, M.9
Smale, S.T.10
-
205
-
-
33749369772
-
Solution structure of the nonmethyl-CpG-binding CXXC domain of the leukaemia-associated MLL histone methyltransferase
-
DOI 10.1038/sj.emboj.7601340, PII 7601340
-
Allen MD, Grummitt CG, Hilcenko C, Min SY, Tonkin LM, Johnson CM, Freund SM, Bycroft M, &, Warren AJ, (2006) Solution structure of the nonmethyl-CpG-binding CXXC domain of the leukaemia-associated MLL histone methyltransferase. EMBO J 25, 4503-4512. (Pubitemid 44498124)
-
(2006)
EMBO Journal
, vol.25
, Issue.19
, pp. 4503-4512
-
-
Allen, M.D.1
Grummitt, C.G.2
Hilcenko, C.3
Min, S.Y.4
Tonkin, L.M.5
Johnson, C.M.6
Freund, S.M.7
Bycroft, M.8
Warren, A.J.9
-
206
-
-
39449088247
-
Human CpG binding protein interacts with MLL1, MLL2 and hSet1 and regulates Hox gene expression
-
Ansari KI, Mishra BP, &, Mandal SS, (2008) Human CpG binding protein interacts with MLL1, MLL2 and hSet1 and regulates Hox gene expression. Biochim Biophys Acta 1779, 66-73.
-
(2008)
Biochim Biophys Acta
, vol.1779
, pp. 66-73
-
-
Ansari, K.I.1
Mishra, B.P.2
Mandal, S.S.3
-
207
-
-
70450221503
-
Embryonic stem cells lacking the epigenetic regulator Cfp1 are hypersensitive to DNA-damaging agents and exhibit decreased Ape1/Ref-1 protein expression and endonuclease activity
-
Tate CM, Fishel ML, Holleran JL, Egorin MJ, &, Skalnik DG, (2009) Embryonic stem cells lacking the epigenetic regulator Cfp1 are hypersensitive to DNA-damaging agents and exhibit decreased Ape1/Ref-1 protein expression and endonuclease activity. DNA Repair (Amst) 8, 1411-1423.
-
(2009)
DNA Repair (Amst)
, vol.8
, pp. 1411-1423
-
-
Tate, C.M.1
Fishel, M.L.2
Holleran, J.L.3
Egorin, M.J.4
Skalnik, D.G.5
-
208
-
-
77951116072
-
CpG islands influence chromatin structure via the CpG-binding protein Cfp1
-
Thomson JP, Skene PJ, Selfridge J, Clouaire T, Guy J, Webb S, Kerr AR, Deaton A, Andrews R, James KD, et al. (2010) CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature 464, 1082-1086.
-
(2010)
Nature
, vol.464
, pp. 1082-1086
-
-
Thomson, J.P.1
Skene, P.J.2
Selfridge, J.3
Clouaire, T.4
Guy, J.5
Webb, S.6
Kerr, A.R.7
Deaton, A.8
Andrews, R.9
James, K.D.10
-
209
-
-
67349190247
-
Linking DNA methylation and histone modification: Patterns and paradigms
-
Cedar H, &, Bergman Y, (2009) Linking DNA methylation and histone modification: patterns and paradigms. Nat Rev Genet 10, 295-304.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 295-304
-
-
Cedar, H.1
Bergman, Y.2
-
210
-
-
78049419464
-
Orphan CpG islands identify numerous conserved promoters in the mammalian genome
-
pii:e1001134.
-
Illingworth RS, Gruenewald-Schneider U, Webb S, Kerr AR, James KD, Turner DJ, Smith C, Harrison DJ, Andrews R, &, Bird AP, (2010) Orphan CpG islands identify numerous conserved promoters in the mammalian genome. PLoS Genet 6. pii:e1001134.
-
(2010)
PLoS Genet
, vol.6
-
-
Illingworth, R.S.1
Gruenewald-Schneider, U.2
Webb, S.3
Kerr, A.R.4
James, K.D.5
Turner, D.J.6
Smith, C.7
Harrison, D.J.8
Andrews, R.9
Bird, A.P.10
-
211
-
-
77950882645
-
CpG islands recruit a histone H3 lysine 36 demethylase
-
Blackledge NP, Zhou JC, Tolstorukov MY, Farcas AM, Park PJ, &, Klose RJ, (2010) CpG islands recruit a histone H3 lysine 36 demethylase. Mol Cell 38, 179-190.
-
(2010)
Mol Cell
, vol.38
, pp. 179-190
-
-
Blackledge, N.P.1
Zhou, J.C.2
Tolstorukov, M.Y.3
Farcas, A.M.4
Park, P.J.5
Klose, R.J.6
-
212
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, Brudno Y, Agarwal S, Iyer LM, Liu DR, Aravind L, et al. (2009) Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324, 930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
-
213
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, &, Zhang Y, (2010) Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466, 1129-1133.
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
214
-
-
0023910144
-
5-Hydroxymethylcytosine DNA glycosylase activity in mammalian tissue
-
Cannon SV, Cummings A, &, Teebor GW, (1988) 5-Hydroxymethylcytosine DNA glycosylase activity in mammalian tissue. Biochem Biophys Res Commun 151, 1173-1179. (Pubitemid 18095244)
-
(1988)
Biochemical and Biophysical Research Communications
, vol.151
, Issue.3
, pp. 1173-1179
-
-
Cannon, S.V.1
Cummings, A.2
Teebor, G.W.3
-
215
-
-
28544432100
-
T:G mismatch-specific thymine-DNA glycosylase (TDG) as a coregulator of transcription interacts with SRC1 family members through a novel tyrosine repeat motif
-
DOI 10.1093/nar/gki940
-
Lucey MJ, Chen D, Lopez-Garcia J, Hart SM, Phoenix F, Al-Jehani R, Alao JP, White R, Kindle KB, Losson R, et al. (2005) T:G mismatch-specific thymine-DNA glycosylase (TDG) as a coregulator of transcription interacts with SRC1 family members through a novel tyrosine repeat motif. Nucleic Acids Res 33, 6393-6404. (Pubitemid 41742576)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.19
, pp. 6393-6404
-
-
Lucey, M.J.1
Chen, D.2
Lopez-Garcia, J.3
Hart, S.M.4
Phoenix, F.5
Al-Jehani, R.6
Alao, J.P.7
White, R.8
Kindle, K.B.9
Losson, R.10
Chambon, P.11
Parker, M.G.12
Schar, P.13
Heery, D.M.14
Buluwela, L.15
Ali, S.16
-
216
-
-
0034693039
-
Biphasic kinetics of the human DNA repair protein MED1 (MBD4), a mismatch-specific DNA N-glycosylase
-
Petronzelli F, Riccio A, Markham GD, Seeholzer SH, Stoerker J, Genuardi M, Yeung AT, Matsumoto Y, &, Bellacosa A, (2000) Biphasic kinetics of the human DNA repair protein MED1 (MBD4), a mismatch-specific DNA N-glycosylase. J Biol Chem 275, 32422-32429.
-
(2000)
J Biol Chem
, vol.275
, pp. 32422-32429
-
-
Petronzelli, F.1
Riccio, A.2
Markham, G.D.3
Seeholzer, S.H.4
Stoerker, J.5
Genuardi, M.6
Yeung, A.T.7
Matsumoto, Y.8
Bellacosa, A.9
-
217
-
-
0344875199
-
Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair
-
DOI 10.1093/nar/gkg730
-
Yoon JH, Iwai S, O'Connor TR, &, Pfeifer GP, (2003) Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair. Nucleic Acids Res 31, 5399-5404. (Pubitemid 37441908)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.18
, pp. 5399-5404
-
-
Yoon, J.-H.1
Iwai, S.2
O'Connor, T.R.3
Pfeifer, G.P.4
-
218
-
-
73349104113
-
Active DNA demethylation mediated by DNA glycosylases
-
Zhu JK, (2009) Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet 43, 143-166.
-
(2009)
Annu Rev Genet
, vol.43
, pp. 143-166
-
-
Zhu, J.K.1
-
219
-
-
78650175023
-
Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2
-
Ko M, Huang Y, Jankowska AM, Pape UJ, Tahiliani M, Bandukwala HS, An J, Lamperti ED, Koh KP, Ganetzky R, et al. (2010) Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2. Nature 468, 839-843.
-
(2010)
Nature
, vol.468
, pp. 839-843
-
-
Ko, M.1
Huang, Y.2
Jankowska, A.M.3
Pape, U.J.4
Tahiliani, M.5
Bandukwala, H.S.6
An, J.7
Lamperti, E.D.8
Koh, K.P.9
Ganetzky, R.10
-
220
-
-
0033592898
-
The human granulocyte-macrophage colony-stimulating factor gene is autonomously regulated in vivo by an inducible tissue-specific enhancer
-
DOI 10.1073/pnas.96.26.15097
-
Cockerill PN, Bert AG, Roberts D, &, Vadas MA, (1999) The human GM-CSF gene is autonomously regulated in vivo by an inducible tissue-specific enhancer. Proc Natl Acad Sci USA 96, 15097-15102. (Pubitemid 30019771)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.26
, pp. 15097-15102
-
-
Cockerill, P.N.1
Bert, A.G.2
Roberts, D.3
Vadas, M.A.4
-
221
-
-
0021491117
-
Tissue-specific DNaseI hypersensitive sites in the 5′-flanking sequences of the tryptophan oxygenase and the tyrosine aminotransferase genes
-
Becker P, Renkawitz R, &, Schutz G, (1984) Tissue-specific DNaseI hypersensitive sites in the 5′-flanking sequences of the tryptophan oxygenase and the tyrosine aminotransferase genes. EMBO J 3, 2015-2020.
-
(1984)
EMBO J
, vol.3
, pp. 2015-2020
-
-
Becker, P.1
Renkawitz, R.2
Schutz, G.3
-
222
-
-
0025815198
-
Glucocorticoids are required for establishment and maintenance of an alteration in chromatin structure: Induction leads to a reversible disruption of nucleosomes over an enhancer
-
Reik A, Schutz G, &, Stewart AF, (1991) Glucocorticoids are required for establishment and maintenance of an alteration in chromatin structure: induction leads to a reversible disruption of nucleosomes over an enhancer. EMBO J 10, 2569-2576. (Pubitemid 21905731)
-
(1991)
EMBO Journal
, vol.10
, Issue.9
, pp. 2569-2576
-
-
Reik, A.1
Schutz, G.2
Francis Stewart, A.3
-
223
-
-
4444245260
-
Nature of the accessible chromatin at a glucocorticoid-responsive enhancer
-
DOI 10.1128/MCB.24.18.7891-7901.2004
-
Flavin M, Cappabianca L, Kress C, Thomassin H, &, Grange T, (2004) Nature of the accessible chromatin at a glucocorticoid-responsive enhancer. Mol Cell Biol 24, 7891-7901. (Pubitemid 39167440)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.18
, pp. 7891-7901
-
-
Flavin, M.1
Cappabianca, L.2
Kress, C.3
Thomassin, H.4
Grange, T.5
-
224
-
-
70449723345
-
Analysis of individual remodeled nucleosomes reveals decreased histone-DNA contacts created by hSWI/SNF
-
Bouazoune K, Miranda TB, Jones PA, &, Kingston RE, (2009) Analysis of individual remodeled nucleosomes reveals decreased histone-DNA contacts created by hSWI/SNF. Nucleic Acids Res 37, 5279-5294.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5279-5294
-
-
Bouazoune, K.1
Miranda, T.B.2
Jones, P.A.3
Kingston, R.E.4
-
225
-
-
0034307314
-
Functional selectivity of recombinant mammalian SWI/SNF subunits
-
Kadam S, McAlpine GS, Phelan ML, Kingston RE, Jones KA, &, Emerson BM, (2000) Functional selectivity of recombinant mammalian SWI/SNF subunits. Genes Dev 14, 2441-2451.
-
(2000)
Genes Dev
, vol.14
, pp. 2441-2451
-
-
Kadam, S.1
McAlpine, G.S.2
Phelan, M.L.3
Kingston, R.E.4
Jones, K.A.5
Emerson, B.M.6
-
226
-
-
53149130940
-
The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription
-
Lefevre P, Witham J, Lacroix CE, Cockerill PN, &, Bonifer C, (2008) The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription. Mol Cell 32, 129-139.
-
(2008)
Mol Cell
, vol.32
, pp. 129-139
-
-
Lefevre, P.1
Witham, J.2
Lacroix, C.E.3
Cockerill, P.N.4
Bonifer, C.5
-
227
-
-
65549140749
-
Mi2beta shows chromatin enzyme specificity by erasing a DNase I-hypersensitive site established by ACF
-
Ishii H, Du H, Zhang Z, Henderson A, Sen R, &, Pazin MJ, (2009) Mi2beta shows chromatin enzyme specificity by erasing a DNase I-hypersensitive site established by ACF. J Biol Chem 284, 7533-7541.
-
(2009)
J Biol Chem
, vol.284
, pp. 7533-7541
-
-
Ishii, H.1
Du, H.2
Zhang, Z.3
Henderson, A.4
Sen, R.5
Pazin, M.J.6
-
228
-
-
1542328277
-
Anatomy of a hypersensitive site
-
DOI 10.1016/j.bbaexp.2003.09.014, PII S0167478103002732
-
Reinke H, &, Horz W, (2004) Anatomy of a hypersensitive site. Biochim Biophys Acta 1677, 24-29. (Pubitemid 38327085)
-
(2004)
Biochimica et Biophysica Acta - Gene Structure and Expression
, vol.1677
, Issue.1-3
, pp. 24-29
-
-
Reinke, H.1
Horz, W.2
-
229
-
-
70249104647
-
Defining mechanisms that regulate RNA polymerase II transcription in vivo
-
Fuda NJ, Ardehali MB, &, Lis JT, (2009) Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature 461, 186-192.
-
(2009)
Nature
, vol.461
, pp. 186-192
-
-
Fuda, N.J.1
Ardehali, M.B.2
Lis, J.T.3
-
231
-
-
0034916613
-
P300/CBP proteins: HATs for transcriptional bridges and scaffolds
-
Chan HM, &, La Thangue NB, (2001) p300/CBP proteins: HATs for transcriptional bridges and scaffolds. J Cell Sci 114, 2363-2373. (Pubitemid 32684792)
-
(2001)
Journal of Cell Science
, vol.114
, Issue.13
, pp. 2363-2373
-
-
Chan, H.M.1
La Thangue, N.B.2
-
232
-
-
77951924012
-
The human IL-3/granulocyte-macrophage colony-stimulating factor locus is epigenetically silent in immature thymocytes and is progressively activated during T cell development
-
Mirabella F, Baxter EW, Boissinot M, James SR, &, Cockerill PN, (2010) The human IL-3/granulocyte-macrophage colony-stimulating factor locus is epigenetically silent in immature thymocytes and is progressively activated during T cell development. J Immunol 184, 3043-3054.
-
(2010)
J Immunol
, vol.184
, pp. 3043-3054
-
-
Mirabella, F.1
Baxter, E.W.2
Boissinot, M.3
James, S.R.4
Cockerill, P.N.5
-
233
-
-
78049447510
-
Runx1 binds as a dimeric complex to overlapping Runx1 sites within a palindromic element in the human GM-CSF enhancer
-
Bowers SR, Calero-Nieto FJ, Valeaux S, Fernandez-Fuentes N, &, Cockerill PN, (2010) Runx1 binds as a dimeric complex to overlapping Runx1 sites within a palindromic element in the human GM-CSF enhancer. Nucleic Acids Res 38, 6124-6134.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 6124-6134
-
-
Bowers, S.R.1
Calero-Nieto, F.J.2
Valeaux, S.3
Fernandez-Fuentes, N.4
Cockerill, P.N.5
-
234
-
-
0035951802
-
Identification of SWI.SNF complex subunit BAF60a as a determinant of the transactivation potential of Fos/Jun dimers
-
Ito T, Yamauchi M, Nishina M, Yamamichi N, Mizutani T, Ui M, Murakami M, &, Iba H, (2001) Identification of SWI.SNF complex subunit BAF60a as a determinant of the transactivation potential of Fos/Jun dimers. J Biol Chem 276, 2852-2857.
-
(2001)
J Biol Chem
, vol.276
, pp. 2852-2857
-
-
Ito, T.1
Yamauchi, M.2
Nishina, M.3
Yamamichi, N.4
Mizutani, T.5
Ui, M.6
Murakami, M.7
Iba, H.8
-
235
-
-
57349200463
-
BRG1-mediated chromatin remodeling regulates differentiation and gene expression of T helper cells
-
Wurster AL, &, Pazin MJ, (2008) BRG1-mediated chromatin remodeling regulates differentiation and gene expression of T helper cells. Mol Cell Biol 28, 7274-7285.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 7274-7285
-
-
Wurster, A.L.1
Pazin, M.J.2
-
236
-
-
0036184236
-
Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
-
DOI 10.1016/S1097-2765(02)00459-8
-
Cirillo LA, Lin FR, Cuesta I, Friedman D, Jarnik M, &, Zaret KS, (2002) Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol Cell 9, 279-289. (Pubitemid 34195554)
-
(2002)
Molecular Cell
, vol.9
, Issue.2
, pp. 279-289
-
-
Cirillo, L.A.1
Lin, F.R.2
Cuesta, I.3
Friedman, D.4
Jarnik, M.5
Zaret, K.S.6
-
237
-
-
37249054901
-
Chromatin opening and stable perturbation of core histone:DNA contacts by FoxO1
-
DOI 10.1074/jbc.M704735200
-
Hatta M, &, Cirillo LA, (2007) Chromatin opening and stable perturbation of core histone:DNA contacts by FoxO1. J Biol Chem 282, 35583-35593. (Pubitemid 350277102)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.49
, pp. 35583-35593
-
-
Hatta, M.1
Cirillo, L.A.2
-
238
-
-
0028872728
-
Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative
-
Adams CC, &, Workman JL, (1995) Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative. Mol Cell Biol 15, 1405-1421.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 1405-1421
-
-
Adams, C.C.1
Workman, J.L.2
-
239
-
-
0030967242
-
The binding of a Fos/Jun heterodimer can completely disrupt the structure of a nucleosome
-
DOI 10.1093/emboj/16.8.2072
-
Ng KW, Ridgway P, Cohen DR, &, Tremethick DJ, (1997) The binding of a Fos/Jun heterodimer can completely disrupt the structure of a nucleosome. EMBO J 16, 2072-2085. (Pubitemid 27170968)
-
(1997)
EMBO Journal
, vol.16
, Issue.8
, pp. 2072-2085
-
-
Ng, K.W.1
Ridgway, P.2
Cohen, D.R.3
Tremethick, D.J.4
-
240
-
-
0031816343
-
Cooperation among multiple transcription factors is required for access to minimal T-cell receptor α-enhancer chromatin in vivo
-
Hernandez-Munain C, Roberts JL, &, Krangel MS, (1998) Cooperation among multiple transcription factors is required for access to minimal T-cell receptor alpha-enhancer chromatin in vivo. Mol Cell Biol 18, 3223-3233. (Pubitemid 28240495)
-
(1998)
Molecular and Cellular Biology
, vol.18
, Issue.6
, pp. 3223-3233
-
-
Hernandez-Munain, C.1
Roberts, J.L.2
Krangel, M.S.3
-
241
-
-
0019332695
-
The number of charge-charge interactions stabilizing the ends of nucleosome DNA
-
McGhee JD, &, Felsenfeld G, (1980) The number of charge-charge interactions stabilizing the ends of nucleosome DNA. Nucleic Acids Res 8, 2751-2769.
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 2751-2769
-
-
McGhee, J.D.1
Felsenfeld, G.2
-
242
-
-
0034619513
-
Interaction of CBF alpha/AML/PEBP2 alpha transcription factors with nucleosomes containing promoter sequences requires flexibility in the translational positioning of the histone octamer and exposure of the CBF alpha site
-
Gutierrez J, Sierra J, Medina R, Puchi M, Imschenetzky M, van Wijnen A, Lian J, Stein G, Stein J, &, Montecino M, (2000) Interaction of CBF alpha/AML/PEBP2 alpha transcription factors with nucleosomes containing promoter sequences requires flexibility in the translational positioning of the histone octamer and exposure of the CBF alpha site. Biochemistry 39, 13565-13574.
-
(2000)
Biochemistry
, vol.39
, pp. 13565-13574
-
-
Gutierrez, J.1
Sierra, J.2
Medina, R.3
Puchi, M.4
Imschenetzky, M.5
Van Wijnen, A.6
Lian, J.7
Stein, G.8
Stein, J.9
Montecino, M.10
-
243
-
-
0032511224
-
Perturbation of nucleosome structure by the erythroid transcription factor GATA-1
-
DOI 10.1006/jmbi.1998.1783
-
Boyes J, Omichinski J, Clark D, Pikaart M, &, Felsenfeld G, (1998) Perturbation of nucleosome structure by the erythroid transcription factor GATA-1. J Mol Biol 279, 529-544. (Pubitemid 28279463)
-
(1998)
Journal of Molecular Biology
, vol.279
, Issue.3
, pp. 529-544
-
-
Boyes, J.1
Omichinski, J.2
Clark, D.3
Pikaart, M.4
Felsenfeld, G.5
-
244
-
-
0029834256
-
NF-E2 disrupts chromatin structure at human β-globin locus control region hypersensitive site 2 in vitro
-
Armstrong JA, &, Emerson BM, (1996) NF-E2 disrupts chromatin structure at human beta-globin locus control region hypersensitive site 2 in vitro. Mol Cell Biol 16, 5634-5644. (Pubitemid 26315083)
-
(1996)
Molecular and Cellular Biology
, vol.16
, Issue.10
, pp. 5634-5644
-
-
Armstrong, J.A.1
Emerson, B.M.2
-
245
-
-
0024095841
-
Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome
-
Perlmann T, &, Wrange O, (1988) Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome. EMBO J 7, 3073-3079.
-
(1988)
EMBO J
, vol.7
, pp. 3073-3079
-
-
Perlmann, T.1
Wrange, O.2
-
246
-
-
0025239781
-
Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter
-
Pina B, Bruggemeier U, &, Beato M, (1990) Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter. Cell 60, 719-731.
-
(1990)
Cell
, vol.60
, pp. 719-731
-
-
Pina, B.1
Bruggemeier, U.2
Beato, M.3
-
247
-
-
0029034248
-
Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo
-
Truss M, Bartsch J, Schelbert A, Hache RJ, &, Beato M, (1995) Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo. EMBO J 14, 1737-1751.
-
(1995)
EMBO J
, vol.14
, pp. 1737-1751
-
-
Truss, M.1
Bartsch, J.2
Schelbert, A.3
Hache, R.J.4
Beato, M.5
-
248
-
-
0030812908
-
Transcription factor access to chromatin
-
DOI 10.1093/nar/25.18.3559
-
Beato M, &, Eisfeld K, (1997) Transcription factor access to chromatin. Nucleic Acids Res 25, 3559-3563. (Pubitemid 27390171)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.18
, pp. 3559-3563
-
-
Beato, M.1
Eisfeld, K.2
-
249
-
-
0028341308
-
Nucleosome binding by the constitutive transcription factor Sp1
-
Li B, Adams CC, &, Workman JL, (1994) Nucleosome binding by the constitutive transcription factor Sp1. J Biol Chem 269, 7756-7763. (Pubitemid 24217991)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.10
, pp. 7756-7763
-
-
Li, B.1
Adams, C.C.2
Workman, J.L.3
-
250
-
-
67649826220
-
From DNA sequence to transcriptional behaviour: A quantitative approach
-
Segal E, &, Widom J, (2009) From DNA sequence to transcriptional behaviour: a quantitative approach. Nat Rev Genet 10, 443-456.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 443-456
-
-
Segal, E.1
Widom, J.2
-
251
-
-
40649106738
-
Interaction of the Glucocorticoid Receptor with the Chromatin Landscape
-
DOI 10.1016/j.molcel.2008.02.010, PII S1097276508001299
-
John S, Sabo PJ, Johnson TA, Sung MH, Biddie SC, Lightman SL, Voss TC, Davis SR, Meltzer PS, Stamatoyannopoulos JA, et al. (2008) Interaction of the glucocorticoid receptor with the chromatin landscape. Mol Cell 29, 611-624. (Pubitemid 351374691)
-
(2008)
Molecular Cell
, vol.29
, Issue.5
, pp. 611-624
-
-
John, S.1
Sabo, P.J.2
Johnson, T.A.3
Sung, M.-H.4
Biddie, S.C.5
Lightman, S.L.6
Voss, T.C.7
Davis, S.R.8
Meltzer, P.S.9
Stamatoyannopoulos, J.A.10
Hager, G.L.11
|