-
1
-
-
11344268432
-
Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS
-
Adelman K., Marr M.T., Werner J., Saunders A., Ni Z., Andrulis E.D., and Lis J.T. Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS. Mol. Cell 17 (2005) 103-112
-
(2005)
Mol. Cell
, vol.17
, pp. 103-112
-
-
Adelman, K.1
Marr, M.T.2
Werner, J.3
Saunders, A.4
Ni, Z.5
Andrulis, E.D.6
Lis, J.T.7
-
2
-
-
33645219388
-
Drosophila Paf1 modulates chromatin structure at actively transcribed genes
-
Adelman K., Wei W., Ardehali M.B., Werner J., Zhu B., Reinberg D., and Lis J.T. Drosophila Paf1 modulates chromatin structure at actively transcribed genes. Mol. Cell. Biol. 26 (2006) 250-260
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 250-260
-
-
Adelman, K.1
Wei, W.2
Ardehali, M.B.3
Werner, J.4
Zhu, B.5
Reinberg, D.6
Lis, J.T.7
-
3
-
-
34047111213
-
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
-
Albert I., Mavrich T.N., Tomsho L.P., Qi J., Zanton S.J., Schuster S.C., and Pugh B.F. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446 (2007) 572-576
-
(2007)
Nature
, vol.446
, pp. 572-576
-
-
Albert, I.1
Mavrich, T.N.2
Tomsho, L.P.3
Qi, J.4
Zanton, S.J.5
Schuster, S.C.6
Pugh, B.F.7
-
4
-
-
0142123203
-
Transcription factor and polymerase recruitment, modification, and movement on dhsp70 in vivo in the minutes following heat shock
-
Boehm A.K., Saunders A., Werner J., and Lis J.T. Transcription factor and polymerase recruitment, modification, and movement on dhsp70 in vivo in the minutes following heat shock. Mol. Cell. Biol. 23 (2003) 7628-7637
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 7628-7637
-
-
Boehm, A.K.1
Saunders, A.2
Werner, J.3
Lis, J.T.4
-
5
-
-
0029890667
-
Evidence that Spt6p controls chromatin structure by a direct interaction with histones
-
Bortvin A., and Winston F. Evidence that Spt6p controls chromatin structure by a direct interaction with histones. Science 272 (1996) 1473-1476
-
(1996)
Science
, vol.272
, pp. 1473-1476
-
-
Bortvin, A.1
Winston, F.2
-
6
-
-
0030713405
-
Disruption of downstream chromatin directed by a transcriptional activator
-
Brown S.A., and Kingston R.E. Disruption of downstream chromatin directed by a transcriptional activator. Genes Dev. 11 (1997) 3116-3121
-
(1997)
Genes Dev.
, vol.11
, pp. 3116-3121
-
-
Brown, S.A.1
Kingston, R.E.2
-
7
-
-
30044449116
-
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
-
Crawford G.E., Holt I.E., Whittle J., Webb B.D., Tai D., Davis S., Margulies E.H., Chen Y., Bernat J.A., Ginsburg D., et al. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS). Genome Res. 16 (2006) 123-131
-
(2006)
Genome Res.
, vol.16
, pp. 123-131
-
-
Crawford, G.E.1
Holt, I.E.2
Whittle, J.3
Webb, B.D.4
Tai, D.5
Davis, S.6
Margulies, E.H.7
Chen, Y.8
Bernat, J.A.9
Ginsburg, D.10
-
8
-
-
0021520936
-
A trans-acting regulatory product necessary for expression of the Drosophila melanogaster 68C glue gene cluster
-
Crowley T.E., Mathers P.H., and Meyerowitz E.M. A trans-acting regulatory product necessary for expression of the Drosophila melanogaster 68C glue gene cluster. Cell 39 (1984) 149-156
-
(1984)
Cell
, vol.39
, pp. 149-156
-
-
Crowley, T.E.1
Mathers, P.H.2
Meyerowitz, E.M.3
-
9
-
-
0033198919
-
Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions
-
D'Amours D., Desnoyers S., D'Silva I., and Poirier G.G. Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions. Biochem. J. 342 (1999) 249-268
-
(1999)
Biochem. J.
, vol.342
, pp. 249-268
-
-
D'Amours, D.1
Desnoyers, S.2
D'Silva, I.3
Poirier, G.G.4
-
10
-
-
0033567325
-
The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction
-
Gaszner M., Vazquez J., and Schedl P. The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction. Genes Dev. 13 (1999) 2098-2107
-
(1999)
Genes Dev.
, vol.13
, pp. 2098-2107
-
-
Gaszner, M.1
Vazquez, J.2
Schedl, P.3
-
11
-
-
0027443464
-
Polymerase processivity and termination on Drosophila heat shock genes
-
Giardina C., and Lis J.T. Polymerase processivity and termination on Drosophila heat shock genes. J. Biol. Chem. 268 (1993) 23806-23811
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 23806-23811
-
-
Giardina, C.1
Lis, J.T.2
-
12
-
-
0028933152
-
Sodium salicylate and yeast heat shock gene transcription
-
Giardina C., and Lis J.T. Sodium salicylate and yeast heat shock gene transcription. J. Biol. Chem. 270 (1995) 10369-10372
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 10369-10372
-
-
Giardina, C.1
Lis, J.T.2
-
13
-
-
0026440184
-
Promoter melting and TFIID complexes on Drosophila genes in vivo
-
Giardina C., Perez-Riba M., and Lis J.T. Promoter melting and TFIID complexes on Drosophila genes in vivo. Genes Dev. 6 (1992) 2190-2200
-
(1992)
Genes Dev.
, vol.6
, pp. 2190-2200
-
-
Giardina, C.1
Perez-Riba, M.2
Lis, J.T.3
-
14
-
-
0030985251
-
Multiple functions of Drosophila heat shock transcription factor in vivo
-
Jedlicka P., Mortin M.A., and Wu C. Multiple functions of Drosophila heat shock transcription factor in vivo. EMBO J. 16 (1997) 2452-2462
-
(1997)
EMBO J.
, vol.16
, pp. 2452-2462
-
-
Jedlicka, P.1
Mortin, M.A.2
Wu, C.3
-
15
-
-
0035839136
-
Translating the histone code
-
Jenuwein T., and Allis C.D. Translating the histone code. Science 293 (2001) 1074-1080
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
16
-
-
33845298285
-
Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin
-
Johnson S.M., Tan F.J., McCullough H.L., Riordan D.P., and Fire A.Z. Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin. Genome Res. 16 (2006) 1505-1516
-
(2006)
Genome Res.
, vol.16
, pp. 1505-1516
-
-
Johnson, S.M.1
Tan, F.J.2
McCullough, H.L.3
Riordan, D.P.4
Fire, A.Z.5
-
17
-
-
0026027982
-
A position-effect assay for boundaries of higher order chromosomal domains
-
Kellum R., and Schedl P. A position-effect assay for boundaries of higher order chromosomal domains. Cell 64 (1991) 941-950
-
(1991)
Cell
, vol.64
, pp. 941-950
-
-
Kellum, R.1
Schedl, P.2
-
18
-
-
10944227347
-
+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1
-
+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1. Cell 119 (2004) 803-814
-
(2004)
Cell
, vol.119
, pp. 803-814
-
-
Kim, M.Y.1
Mauro, S.2
Gevry, N.3
Lis, J.T.4
Kraus, W.L.5
-
19
-
-
0022483705
-
The presence of nucleosomes on a DNA template prevents initiation by RNA polymerase II in vitro
-
Knezetic J.A., and Luse D.S. The presence of nucleosomes on a DNA template prevents initiation by RNA polymerase II in vitro. Cell 45 (1986) 95-104
-
(1986)
Cell
, vol.45
, pp. 95-104
-
-
Knezetic, J.A.1
Luse, D.S.2
-
20
-
-
0038682011
-
PARP goes transcription
-
Kraus W.L., and Lis J.T. PARP goes transcription. Cell 113 (2003) 677-683
-
(2003)
Cell
, vol.113
, pp. 677-683
-
-
Kraus, W.L.1
Lis, J.T.2
-
21
-
-
0842304225
-
Studies of the role of the Drosophila scs and scs′ insulators in defining boundaries of a chromosome puff
-
Kuhn E.J., Hart C.M., and Geyer P.K. Studies of the role of the Drosophila scs and scs′ insulators in defining boundaries of a chromosome puff. Mol. Cell. Biol. 24 (2004) 1470-1480
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 1470-1480
-
-
Kuhn, E.J.1
Hart, C.M.2
Geyer, P.K.3
-
22
-
-
34748826166
-
A high-resolution atlas of nucleosome occupancy in yeast
-
Lee W., Tillo D., Bray N., Morse R.H., Davis R.W., Hughes T.R., and Nislow C. A high-resolution atlas of nucleosome occupancy in yeast. Nat. Genet. 39 (2007) 1235-1244
-
(2007)
Nat. Genet.
, vol.39
, pp. 1235-1244
-
-
Lee, W.1
Tillo, D.2
Bray, N.3
Morse, R.H.4
Davis, R.W.5
Hughes, T.R.6
Nislow, C.7
-
23
-
-
0002459499
-
Parallel changes in puffing activity and patterns of protein synthesis in salivary glands of Drosophila
-
Lewis M., Helmsing P.J., and Ashburner M. Parallel changes in puffing activity and patterns of protein synthesis in salivary glands of Drosophila. Proc. Natl. Acad. Sci. USA 72 (1975) 3604-3608
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 3604-3608
-
-
Lewis, M.1
Helmsing, P.J.2
Ashburner, M.3
-
24
-
-
33847070442
-
The role of chromatin during transcription
-
Li B., Carey M., and Workman J.L. The role of chromatin during transcription. Cell 128 (2007) 707-719
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
25
-
-
36048949269
-
Imaging Drosophila gene activation and polymerase pausing in vivo
-
Lis J.T. Imaging Drosophila gene activation and polymerase pausing in vivo. Nature 450 (2007) 198-202
-
(2007)
Nature
, vol.450
, pp. 198-202
-
-
Lis, J.T.1
-
26
-
-
0023663417
-
Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones
-
Lorch Y., LaPointe J.W., and Kornberg R.D. Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones. Cell 49 (1987) 203-210
-
(1987)
Cell
, vol.49
, pp. 203-210
-
-
Lorch, Y.1
LaPointe, J.W.2
Kornberg, R.D.3
-
27
-
-
43749099875
-
Nucleosome organization in the Drosophila genome
-
Mavrich T.N., Jiang C., Ioshikhes I.P., Li X., Venters B.J., Zanton S.J., Tomsho L.P., Qi J., Glaser R.L., Schuster S.C., et al. Nucleosome organization in the Drosophila genome. Nature 453 (2008) 358-362
-
(2008)
Nature
, vol.453
, pp. 358-362
-
-
Mavrich, T.N.1
Jiang, C.2
Ioshikhes, I.P.3
Li, X.4
Venters, B.J.5
Zanton, S.J.6
Tomsho, L.P.7
Qi, J.8
Glaser, R.L.9
Schuster, S.C.10
-
28
-
-
0018290840
-
Post-replicative nonribosomal transcription units in D. melanogaster embryos
-
McKnight S.L., and Miller Jr. O.L. Post-replicative nonribosomal transcription units in D. melanogaster embryos. Cell 17 (1979) 551-563
-
(1979)
Cell
, vol.17
, pp. 551-563
-
-
McKnight, S.L.1
Miller Jr., O.L.2
-
29
-
-
27144510368
-
Genome-scale profiling of histone H3.3 replacement patterns
-
Mito Y., Henikoff J.G., and Henikoff S. Genome-scale profiling of histone H3.3 replacement patterns. Nat. Genet. 37 (2005) 1090-1097
-
(2005)
Nat. Genet.
, vol.37
, pp. 1090-1097
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
30
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
Muse G.W., Gilchrist D.A., Nechaev S., Shah R., Parker J.S., Grissom S.F., Zeitlinger J., and Adelman K. RNA polymerase is poised for activation across the genome. Nat. Genet. 39 (2007) 1507-1511
-
(2007)
Nat. Genet.
, vol.39
, pp. 1507-1511
-
-
Muse, G.W.1
Gilchrist, D.A.2
Nechaev, S.3
Shah, R.4
Parker, J.S.5
Grissom, S.F.6
Zeitlinger, J.7
Adelman, K.8
-
31
-
-
0024315628
-
Change in the pattern of histone binding to DNA upon transcriptional activation
-
Nacheva G.A., Guschin D.Y., Preobrazhenskaya O.V., Karpov V.L., Ebralidse K.K., and Mirzabekov A.D. Change in the pattern of histone binding to DNA upon transcriptional activation. Cell 58 (1989) 27-36
-
(1989)
Cell
, vol.58
, pp. 27-36
-
-
Nacheva, G.A.1
Guschin, D.Y.2
Preobrazhenskaya, O.V.3
Karpov, V.L.4
Ebralidse, K.K.5
Mirzabekov, A.D.6
-
32
-
-
38549115170
-
P-TEFb is critical for the maturation of RNA Polymerase II into productive elongation in vivo
-
10.1128/MCB.01859-07 Published online December 10, 2007
-
Ni Z., Saunders A., Fuda N.J., Yao J., Suarez J.R., Webb W.W., and Lis J.T. P-TEFb is critical for the maturation of RNA Polymerase II into productive elongation in vivo. Mol. Cell. Biol. 28 (2008) 1161-1170 10.1128/MCB.01859-07 Published online December 10, 2007
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 1161-1170
-
-
Ni, Z.1
Saunders, A.2
Fuda, N.J.3
Yao, J.4
Suarez, J.R.5
Webb, W.W.6
Lis, J.T.7
-
33
-
-
0027157980
-
Rapid changes in Drosophila transcription after an instantaneous heat shock
-
O'Brien T., and Lis J.T. Rapid changes in Drosophila transcription after an instantaneous heat shock. Mol. Cell. Biol. 13 (1993) 3456-3463
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 3456-3463
-
-
O'Brien, T.1
Lis, J.T.2
-
34
-
-
0029042691
-
Distribution of GAGA protein on Drosophila genes in vivo
-
O'Brien T., Wilkins R.C., Giardina C., and Lis J.T. Distribution of GAGA protein on Drosophila genes in vivo. Genes Dev. 9 (1995) 1098-1110
-
(1995)
Genes Dev.
, vol.9
, pp. 1098-1110
-
-
O'Brien, T.1
Wilkins, R.C.2
Giardina, C.3
Lis, J.T.4
-
35
-
-
0032498273
-
FACT, a factor that facilitates transcript elongation through nucleosomes
-
Orphanides G., LeRoy G., Chang C.H., Luse D.S., and Reinberg D. FACT, a factor that facilitates transcript elongation through nucleosomes. Cell 92 (1998) 105-116
-
(1998)
Cell
, vol.92
, pp. 105-116
-
-
Orphanides, G.1
LeRoy, G.2
Chang, C.H.3
Luse, D.S.4
Reinberg, D.5
-
36
-
-
36148986455
-
Nucleosomal core histones mediate dynamic regulation of poly (ADP-Ribose) polymerase 1 protein binding to chromatin and induction of its enzymatic activity
-
10.1074/jbc.M705989200 Published online September 7 2007
-
Pinnola A., Naumova N., Shah M., and Tulin A.V. Nucleosomal core histones mediate dynamic regulation of poly (ADP-Ribose) polymerase 1 protein binding to chromatin and induction of its enzymatic activity. J. Biol. Chem. 282 (2007) 32511-325119 10.1074/jbc.M705989200 Published online September 7 2007
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 32511-325119
-
-
Pinnola, A.1
Naumova, N.2
Shah, M.3
Tulin, A.V.4
-
37
-
-
34250168295
-
Rules and regulation in the primary structure of chromatin
-
Rando O.J., and Ahmad K. Rules and regulation in the primary structure of chromatin. Curr. Opin. Cell Biol. 19 (2007) 250-256
-
(2007)
Curr. Opin. Cell Biol.
, vol.19
, pp. 250-256
-
-
Rando, O.J.1
Ahmad, K.2
-
38
-
-
0027166316
-
In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes
-
Rasmussen E.B., and Lis J.T. In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes. Proc. Natl. Acad. Sci. USA 90 (1993) 7923-7927
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 7923-7927
-
-
Rasmussen, E.B.1
Lis, J.T.2
-
39
-
-
0038094502
-
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter
-
Reinke H., and Horz W. Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. Mol. Cell 11 (2003) 1599-1607
-
(2003)
Mol. Cell
, vol.11
, pp. 1599-1607
-
-
Reinke, H.1
Horz, W.2
-
40
-
-
0025166038
-
Postinitiation transcriptional control in Drosophila melanogaster
-
Rougvie A.E., and Lis J.T. Postinitiation transcriptional control in Drosophila melanogaster. Mol. Cell. Biol. 10 (1990) 6041-6045
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 6041-6045
-
-
Rougvie, A.E.1
Lis, J.T.2
-
41
-
-
33745790132
-
Chromatin remodelling: the industrial revolution of DNA around histones
-
Saha A., Wittmeyer J., and Cairns B.R. Chromatin remodelling: the industrial revolution of DNA around histones. Nat. Rev. Mol. Cell Biol. 7 (2006) 437-447
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 437-447
-
-
Saha, A.1
Wittmeyer, J.2
Cairns, B.R.3
-
43
-
-
0034668118
-
Quantitative reverse transcription-polymerase chain reaction to study mRNA decay: comparison of endpoint and real-time methods
-
Schmittgen T.D., Zakrajsek B.A., Mills A.G., Gorn V., Singer M.J., and Reed M.W. Quantitative reverse transcription-polymerase chain reaction to study mRNA decay: comparison of endpoint and real-time methods. Anal. Biochem. 285 (2000) 194-204
-
(2000)
Anal. Biochem.
, vol.285
, pp. 194-204
-
-
Schmittgen, T.D.1
Zakrajsek, B.A.2
Mills, A.G.3
Gorn, V.4
Singer, M.J.5
Reed, M.W.6
-
44
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones D.E., Cui K., Cuddapah S., Roh T.Y., Barski A., Wang Z., Wei G., and Zhao K. Dynamic regulation of nucleosome positioning in the human genome. Cell 132 (2008) 887-898
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
45
-
-
33646141366
-
Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II
-
Schwabish M.A., and Struhl K. Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II. Mol. Cell 22 (2006) 415-422
-
(2006)
Mol. Cell
, vol.22
, pp. 415-422
-
-
Schwabish, M.A.1
Struhl, K.2
-
46
-
-
20444403749
-
Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast
-
Sekinger E.A., Moqtaderi Z., and Struhl K. Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol. Cell 18 (2005) 735-748
-
(2005)
Mol. Cell
, vol.18
, pp. 735-748
-
-
Sekinger, E.A.1
Moqtaderi, Z.2
Struhl, K.3
-
47
-
-
33746655498
-
Switching on chromatin: mechanistic role of histone H4-K16 acetylation
-
Shogren-Knaak M., and Peterson C.L. Switching on chromatin: mechanistic role of histone H4-K16 acetylation. Cell Cycle 5 (2006) 1361-1365
-
(2006)
Cell Cycle
, vol.5
, pp. 1361-1365
-
-
Shogren-Knaak, M.1
Peterson, C.L.2
-
48
-
-
0028822276
-
HSF access to heat shock elements in vivo depends critically on promoter architecture defined by GAGA factor, TFIID, and RNA polymerase II binding sites
-
Shopland L.S., Hirayoshi K., Fernandes M., and Lis J.T. HSF access to heat shock elements in vivo depends critically on promoter architecture defined by GAGA factor, TFIID, and RNA polymerase II binding sites. Genes Dev. 9 (1995) 2756-2769
-
(1995)
Genes Dev.
, vol.9
, pp. 2756-2769
-
-
Shopland, L.S.1
Hirayoshi, K.2
Fernandes, M.3
Lis, J.T.4
-
49
-
-
0021967958
-
Determinants of heat shock-induced chromosome puffing
-
Simon J.A., Sutton C.A., Lobell R.B., Glaser R.L., and Lis J.T. Determinants of heat shock-induced chromosome puffing. Cell 40 (1985) 805-817
-
(1985)
Cell
, vol.40
, pp. 805-817
-
-
Simon, J.A.1
Sutton, C.A.2
Lobell, R.B.3
Glaser, R.L.4
Lis, J.T.5
-
50
-
-
0023948705
-
Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene
-
Solomon M.J., Larsen P.L., and Varshavsky A. Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene. Cell 53 (1988) 937-947
-
(1988)
Cell
, vol.53
, pp. 937-947
-
-
Solomon, M.J.1
Larsen, P.L.2
Varshavsky, A.3
-
51
-
-
0025232290
-
Spatial and temporal patterns of E74 transcription during Drosophila development
-
Thummel C.S., Burtis K.C., and Hogness D.S. Spatial and temporal patterns of E74 transcription during Drosophila development. Cell 61 (1990) 101-111
-
(1990)
Cell
, vol.61
, pp. 101-111
-
-
Thummel, C.S.1
Burtis, K.C.2
Hogness, D.S.3
-
52
-
-
34250322116
-
Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
-
Trinklein N.D., Karaoz U., Wu J., Halees A., Force Aldred S., Collins P.J., Zheng D., Zhang Z.D., Gerstein M.B., Snyder M., et al. Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome. Genome Res. 17 (2007) 720-731
-
(2007)
Genome Res.
, vol.17
, pp. 720-731
-
-
Trinklein, N.D.1
Karaoz, U.2
Wu, J.3
Halees, A.4
Force Aldred, S.5
Collins, P.J.6
Zheng, D.7
Zhang, Z.D.8
Gerstein, M.B.9
Snyder, M.10
-
53
-
-
0029562736
-
Purification and properties of an ATP-dependent nucleosome remodeling factor
-
Tsukiyama T., and Wu C. Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83 (1995) 1011-1020
-
(1995)
Cell
, vol.83
, pp. 1011-1020
-
-
Tsukiyama, T.1
Wu, C.2
-
54
-
-
0028055116
-
ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor
-
Tsukiyama T., Becker P.B., and Wu C. ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor. Nature 367 (1994) 525-532
-
(1994)
Nature
, vol.367
, pp. 525-532
-
-
Tsukiyama, T.1
Becker, P.B.2
Wu, C.3
-
55
-
-
0037462597
-
Chromatin loosening by poly(ADP)-ribose polymerase (PARP) at Drosophila puff loci
-
Tulin A., and Spradling A. Chromatin loosening by poly(ADP)-ribose polymerase (PARP) at Drosophila puff loci. Science 299 (2003) 560-562
-
(2003)
Science
, vol.299
, pp. 560-562
-
-
Tulin, A.1
Spradling, A.2
-
56
-
-
0022178109
-
The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains
-
Udvardy A., Maine E., and Schedl P. The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains. J. Mol. Biol. 185 (1985) 341-358
-
(1985)
J. Mol. Biol.
, vol.185
, pp. 341-358
-
-
Udvardy, A.1
Maine, E.2
Schedl, P.3
-
57
-
-
0028600559
-
Sequences required for enhancer blocking activity of scs are located within two nuclease-hypersensitive regions
-
Vazquez J., and Schedl P. Sequences required for enhancer blocking activity of scs are located within two nuclease-hypersensitive regions. EMBO J. 13 (1994) 5984-5993
-
(1994)
EMBO J.
, vol.13
, pp. 5984-5993
-
-
Vazquez, J.1
Schedl, P.2
-
58
-
-
0036733355
-
The therapeutic potential of poly(ADP-ribose) polymerase inhibitors
-
Virag L., and Szabo C. The therapeutic potential of poly(ADP-ribose) polymerase inhibitors. Pharmacol. Rev. 54 (2002) 375-429
-
(2002)
Pharmacol. Rev.
, vol.54
, pp. 375-429
-
-
Virag, L.1
Szabo, C.2
-
59
-
-
35648955118
-
The DNA binding and catalytic domains of poly(ADP-ribose) polymerase-1 cooperate in the regulation of chromatin structure and transcription
-
10.1128/MCB.01314-07 Published online September 4, 2007
-
Wacker D.A., Ruhl D.D., Balagamwala E.H., Hope K.M., Zhang T., and Kraus W.L. The DNA binding and catalytic domains of poly(ADP-ribose) polymerase-1 cooperate in the regulation of chromatin structure and transcription. Mol. Cell. Biol. 27 (2007) 7475-7485 10.1128/MCB.01314-07 Published online September 4, 2007
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 7475-7485
-
-
Wacker, D.A.1
Ruhl, D.D.2
Balagamwala, E.H.3
Hope, K.M.4
Zhang, T.5
Kraus, W.L.6
-
60
-
-
0029909656
-
Sodium salicylate decreases intracellular ATP, induces both heat shock factor binding and chromosomal puffing, but does not induce hsp 70 gene transcription in Drosophila
-
Winegarden N.A., Wong K.S., Sopta M., and Westwood J.T. Sodium salicylate decreases intracellular ATP, induces both heat shock factor binding and chromosomal puffing, but does not induce hsp 70 gene transcription in Drosophila. J. Biol. Chem. 271 (1996) 26971-26980
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 26971-26980
-
-
Winegarden, N.A.1
Wong, K.S.2
Sopta, M.3
Westwood, J.T.4
-
61
-
-
0019303186
-
The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I
-
Wu C. The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I. Nature 286 (1980) 854-860
-
(1980)
Nature
, vol.286
, pp. 854-860
-
-
Wu, C.1
-
62
-
-
0018359588
-
The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity
-
Wu C., Wong Y.C., and Elgin S.C. The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity. Cell 16 (1979) 807-814
-
(1979)
Cell
, vol.16
, pp. 807-814
-
-
Wu, C.1
Wong, Y.C.2
Elgin, S.C.3
-
63
-
-
33745839365
-
A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling
-
Wysocka J., Swigut T., Xiao H., Milne T.A., Kwon S.Y., Landry J., Kauer M., Tackett A.J., Chait B.T., Badenhorst P., et al. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling. Nature 442 (2006) 86-90
-
(2006)
Nature
, vol.442
, pp. 86-90
-
-
Wysocka, J.1
Swigut, T.2
Xiao, H.3
Milne, T.A.4
Kwon, S.Y.5
Landry, J.6
Kauer, M.7
Tackett, A.J.8
Chait, B.T.9
Badenhorst, P.10
-
64
-
-
37349099448
-
Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation
-
Yao J., Ardehali M.B., Fecko C.J., Webb W.W., and Lis J.T. Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. Mol. Cell 28 (2007) 978-990
-
(2007)
Mol. Cell
, vol.28
, pp. 978-990
-
-
Yao, J.1
Ardehali, M.B.2
Fecko, C.J.3
Webb, W.W.4
Lis, J.T.5
-
65
-
-
22744432660
-
Genome-scale identification of nucleosome positions in S. cerevisiae
-
Yuan G.C., Liu Y.J., Dion M.F., Slack M.D., Wu L.F., Altschuler S.J., and Rando O.J. Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309 (2005) 626-630
-
(2005)
Science
, vol.309
, pp. 626-630
-
-
Yuan, G.C.1
Liu, Y.J.2
Dion, M.F.3
Slack, M.D.4
Wu, L.F.5
Altschuler, S.J.6
Rando, O.J.7
-
66
-
-
26444545490
-
Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density
-
Zhao J., Herrera-Diaz J., and Gross D.S. Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density. Mol. Cell. Biol. 25 (2005) 8985-8999
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 8985-8999
-
-
Zhao, J.1
Herrera-Diaz, J.2
Gross, D.S.3
-
67
-
-
0029063587
-
Visualization of chromosomal domains with boundary element-associated factor BEAF-32
-
Zhao K., Hart C.M., and Laemmli U.K. Visualization of chromosomal domains with boundary element-associated factor BEAF-32. Cell 81 (1995) 879-889
-
(1995)
Cell
, vol.81
, pp. 879-889
-
-
Zhao, K.1
Hart, C.M.2
Laemmli, U.K.3
|