Mi2β shows chromatin enzyme specificity by erasing a DNase I-hypersensitive site established by ACF

Journal of Biological Chemistry

Volumn 284, Issue 12, 2009, Pages 7533-7541

  Ishii, Haruhiko ^a,d   Du, Hansen ^b   Zhang, Zhaoqing ^c,e   Henderson, Angus ^c,f   Sen, Ranjan ^b   Pazin, Michael J ^b,c  

^a BRANDEIS UNIVERSITY   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

^c MASSACHUSETTS GENERAL HOSPITAL   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e SABiosciences Corporation   (United States)

^f Dept of Innovation Industry Science and Research ^*  (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CELL-FREE SYSTEM; CHROMATIN STRUCTURE; COMBINATORIAL CONTROL; ENZYME SPECIFICITY; IMMUNOGLOBULIN HEAVY CHAIN GENES; TRANSCRIPTION FACTOR BINDING; TRANSCRIPTIONAL ACTIVATION DOMAIN;

CATALYSTS; CHROMOSOMES; ENZYMES; TRANSCRIPTION; TRANSCRIPTION FACTORS;

BINDING SITES;

ADENOSINE TRIPHOSPHATE; CELL ENZYME; DEOXYRIBONUCLEASE I; IMMUNOGLOBULIN HEAVY CHAIN; PROTEIN ACF; PROTEIN MI2BETA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR E3; UNCLASSIFIED DRUG; ACF PROTEIN, HUMAN; AUTOANTIGEN; BASIC HELIX LOOP HELIX LEUCINE ZIPPER TRANSCRIPTION FACTOR; CHD4 PROTEIN, HUMAN; HELICASE; ONCOPROTEIN; PROTO ONCOGENE PROTEIN SPI 1; PROTO-ONCOGENE PROTEIN SPI-1; RNA BINDING PROTEIN; TFE3 PROTEIN, HUMAN; TRANSACTIVATOR PROTEIN;

ARTICLE; CELL FREE SYSTEM; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN STRUCTURE; CONTROLLED STUDY; DROSOPHILA; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME MODIFICATION; ENZYME REGULATION; ENZYME SPECIFICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; TRANSCRIPTION INITIATION; ANIMAL; CELL LINE; CHEMISTRY; DROSOPHILA MELANOGASTER; ENHANCER REGION; HUMAN; METABOLISM; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE;

EUKARYOTA;

ADENOSINE TRIPHOSPHATE; ANIMALS; AUTOANTIGENS; BASIC HELIX-LOOP-HELIX LEUCINE ZIPPER TRANSCRIPTION FACTORS; CELL LINE; CELL-FREE SYSTEM; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; DEOXYRIBONUCLEASE I; DNA HELICASES; DROSOPHILA MELANOGASTER; ENHANCER ELEMENTS, GENETIC; HUMANS; IMMUNOGLOBULIN HEAVY CHAINS; PROTEIN STRUCTURE, TERTIARY; PROTO-ONCOGENE PROTEINS; RNA-BINDING PROTEINS; SUBSTRATE SPECIFICITY; TRANS-ACTIVATORS;

EID: 65549140749     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M807617200     Document Type: Article

References (79)

1. Vignali, M., Hassan, A. H., Neely, K. E., and Workman, J. L. (2000) Mol. Cell. Biol. 20, 1899-1910
2. Lusser, A., and Kadonaga, J. T. (2003) BioEssays 25, 1192-1200
3. Eisen, J. A., Sweder, K. S., and Hanawalt, P. C. (1995) Nucleic Acids Res. 23, 2715-2723
4. Narlikar, G. J., Fan, H. Y., and Kingston, R. E. (2002) Cell 108, 475-487
5. Turner, B. M. (2002) Cell 111, 285-291
6. Jenuwein, T., and Allis, C. D. (2001) Science 293, 1074-1080
7. Li, E. (2002) Nat. Rev. Genet 3, 662-673
8. Hall, D. B., and Struhl, K. (2002) J. Biol. Chem. 277, 46043-46050
9. Yudkovsky, N., Logie, C., Hahn, S., and Peterson, C. L. (1999) Genes Dev. 13, 2369-2374
10. Ikeda, K., Steger, D. J., Eberharter, A., and Workman, J. L. (1999) Mol. Cell. Biol. 19, 855-863
11. Pazin, M. J., Sheridan, P. L., Cannon, K., Cao, Z., Keck, J. G., Kadonaga, J. T., and Jones, K. A. (1996) Genes Dev. 10, 37-49
12. Pazin, M. J., Kamakaka, R. T., and Kadonaga, J. T. (1994) Science 266, 2007-2011
13. Sakai, E., Bottaro, A., Davidson, L., Sleckman, B. P., and Alt, F. W. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 1526-1531
14. Serwe, M., and Sablitzky, F. (1993) EMBO J. 12, 2321-2327
15. Ernst, P., and Smale, S. T. (1995) Immunity 2, 427-438
16. Nikolajczyk, B. S., Cortes, M., Feinman, R., and Sen, R. (1997) Mol. Cell. Biol. 17, 3527-3535
17. Tian, G., Erman, B., Ishii, H., Gangopadhyay, S. S., and Sen, R. (1999) Mol. Cell. Biol. 19, 2946-2957
18. Rao, E., Dang, W., Tian, G., and Sen, R. (1997) J. Biol. Chem. 272, 6722-6732
19. Erman, B., and Sen, R. (1996) EMBO J. 15, 4665-4675
20. Nelsen, B., Tian, G., Erman, B., Gregoire, J., Maki, R., Graves, B., and Sen, R. (1993) Science 261, 82-86
21. Ishii, H., Sen, R., and Pazin, M. J. (2004) J. Biol. Chem. 279, 7331-7338
22. Boyle, A. P., Davis, S., Shulha, H. P., Meltzer, P., Margulies, E. H., Weng, Z., Furey, T. S., and Crawford, G. E. (2008) Cell 132, 311-322
23. John, S., Sabo, P. J., Johnson, T. A., Sung, M. H., Biddie, S. C., Lightman, S. L., Voss, T. C., Davis, S. R., Meltzer, P. S., Stamatoyannopoulos, J. A., and Hager, G. L. (2008) Mol. Cell 29, 611-624
24. Pazin, M. J., Hermann, J. W., and Kadonaga, J. T. (1998) J. Biol. Chem. 273, 34653-34660
25. Zaret, K. S. (2002) Nat. Rev. Genet 3, 499-512
26. Cirillo, L. A., Lin, F. R., Cuesta, I., Friedman, D., Jarnik, M., and Zaret, K. S. (2002) Mol. Cell 9, 279-289
27. Fyodorov, D. V., and Levenstein, M. E. (2002) Curr. Protoc. Mol. Biol. Chap. 21, Unit 21.7
28. Xiao, H., Sandaltzopoulos, R., Wang, H., Hamiche, A., Ranallo, R., Lee, K., Fu, D., and Wu, C. (2001) Mol. Cell 8, 531-543
29. Sif, S., Stukenberg, P. T., Kirschner, M. W., and Kingston, R. E. (1998) Genes Dev. 12, 2842-2851
30. Aalfs, J. D., Narlikar, G. J., and Kingston, R. E. (2001) J. Biol. Chem. 276, 34270-34278
31. Phelan, M. L., Sif, S., Narlikar, G. J., and Kingston, R. E. (1999) Mol. Cell 3, 247-253
32. Pazin, M. J., and Kadonaga, J. T. (1998) in Chromatin: A Practical Approach (Gould, H., ed) pp. 173-194, Oxford University Press, Oxford
33. Beckmann, H., Su, L. K., and Kadesch, T. (1990) Genes Dev. 4, 167-179
34. Artandi, S. E., Merrell, K., Avitahl, N., Wong, K. K., and Calame, K. (1995) Nucleic Acids Res. 23, 3865-3871
35. Fisher, R. C., Olson, M. C., Pongubala, J. M., Perkel, J. M., Atchison, M. L., Scott, E. W., and Simon, M. C. (1998) Mol. Cell. Biol. 18, 4347-4357
36. Klemsz, M. J., and Maki, R. A. (1996) Mol. Cell. Biol. 16, 390-397
37. Eisenbeis, C. F., Singh, H., and Storb, U. (1995) Genes Dev. 9, 1377-1387
38. Pongubala, J. M., Nagulapalli, S., Klemsz, M. J., McKercher, S. R., Maki, R. A., and Atchison, M. L. (1992) Mol. Cell. Biol. 12, 368-378
39. Tsukiyama, T., Becker, P. B., and Wu, C. (1994) Nature 367, 525-532
40. Jenuwein, T., Forrester, W. C., Qiu, R. G., and Grosschedl, R. (1993) Genes Dev. 7, 2016-2032
41. Mills, F. C., Fisher, L. M., Kuroda, R., Ford, A. M., and Gould, H. J. (1983) Nature 306, 809-812
42. Pazin, M. J., Bhargava, P., Geiduschek, E. P., and Kadonaga, J. T. (1997) Science 276, 809-812
43. Jones, P. L., Veenstra, G. J., Wade, P. A., Vermaak, D., Kass, S. U., Landsberger, N., Strouboulis, J., and Wolffe, A. P. (1998) Nat. Genet. 19, 187-191
44. Stopka, T., and Skoultchi, A. I. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 14097-14102
45. Bultman, S., Gebuhr, T., Yee, D., La Mantia, C., Nicholson, J., Gilliam, A., Randazzo, F., Metzger, D., Chambon, P., Crabtree, G., and Magnuson, T. (2000) Mol. Cell 6, 1287-1295
46. Kal, A. J., Mahmoudi, T., Zak, N. B., and Verrijzer, C. P. (2000) Genes Dev. 14, 1058-1071
47. Kadam, S., and Emerson, B. M. (2003) Mol. Cell 11, 377-389
48. Dilworth, F. J., Fromental-Ramain, C., Yamamoto, K., and Chambon, P. (2000) Mol. Cell 6, 1049-1058
49. Lemon, B., Inouye, C., King, D. S., and Tjian, R. (2001) Nature 414, 924-928
50. Boyer, L. A., Logie, C., Bonte, E., Becker, P. B., Wade, P. A., Wolffe, A. P., Wu, C., Imbalzano, A. N., and Peterson, C. L. (2000) J. Biol. Chem. 275, 18864-18870
51. Kassabov, S. R., Zhang, B., Persinger, J., and Bartholomew, B. (2003) Mol. Cell 11, 391-403
52. Flaus, A., and Owen-Hughes, T. (2003) Mol. Cell. Biol. 23, 7767-7779
53. Fan, H. Y., He, X., Kingston, R. E., and Narlikar, G. J. (2003) Mol. Cell 11, 1311-1322
54. Brehm, A., Langst, G., Kehle, J., Clapier, C. R., Imhof, A., Eberharter, A., Muller, J., and Becker, P. B. (2000) EMBO J. 19, 4332-4341
55. Corey, L. L., Weirich, C. S., Benjamin, I. J., and Kingston, R. E. (2003) Genes Dev. 17, 1392-1401
56. Hakimi, M. A., Bochar, D. A., Schmiesing, J. A., Dong, Y., Barak, O. G., Speicher, D. W., Yokomori, K., and Shiekhattar, R. (2002) Nature 418, 994-998
57. Alen, C., Kent, N. A., Jones, H. S., O'Sullivan, J., Aranda, A., and Proudfoot, N. J. (2002) Mol. Cell 10, 1441-1452
58. Metivier, R., Penot, G., Hubner, M. R., Reid, G., Brand, H., Kos, M., and Gannon, F. (2003) Cell 115, 751-763
59. Ramirez-Carrozzi, V. R., Nazarian, A. A., Li, C. C., Gore, S. L., Sridharan, R., Imbalzano, A. N., and Smale, S. T. (2006) Genes Dev. 20, 282-296
60. Zaret, K. S., and Yamamoto, K. R. (1984) Cell 38, 29-38
61. Langst, G., Becker, P. B., and Grummt, I. (1998) EMBO J. 17, 3135-3145
62. Ryan, M. P., Jones, R., and Morse, R. H. (1998) Mol. Cell. Biol. 18, 1774-1782
63. Pina, B., Bruggemeier, U., and Beato, M. (1990) Cell 60, 719-731
64. Cirillo, L. A., and Zaret, K. S. (1999) Mol. Cell 4, 961-969
65. Armstrong, J. A., and Emerson, B. M. (1996) Mol. Cell. Biol. 16, 5634-5644
66. Varga-Weisz, P. D., Blank, T. A., and Becker, P. B. (1995) EMBO J. 14, 2209-2216
67. Wechsler, D. S., Papoulas, O., Dang, C. V., and Kingston, R. E. (1994) Mol. Cell. Biol. 14, 4097-4107
68. Polach, K. J., and Widom, J. (1996) J. Mol. Biol. 258, 800-812
69. Adams, C. C., and Workman, J. L. (1995) Mol. Cell. Biol. 15, 1405-1421
70. Cote, J., Quinn, J., Workman, J. L., and Peterson, C. L. (1994) Science 265, 53-60
71. Imbalzano, A. N., Kwon, H., Green, M. R., and Kingston, R. E. (1994) Nature 370, 481-485
72. Rekhtman, N., Choe, K. S., Matushansky, I., Murray, S., Stopka, T., and Skoultchi, A. I. (2003) Mol. Cell. Biol. 23, 7460-7474
73. Suzuki, M., Yamada, T., Kihara-Negishi, F., Sakurai, T., and Oikawa, T. (2003) Oncogene 22, 8688-8698
74. Linderson, Y., Eberhard, D., Malin, S., Johansson, A., Busslinger, M., and Pettersson, S. (2004) EMBO Rep. 5, 291-296
75. Tong, J. K., Hassig, C. A., Schnitzler, G. R., Kingston, R. E., and Schreiber, S. L. (1998) Nature 395, 917-921
76. Zhang, Y., Ng, H. H., Erdjument-Bromage, H., Tempst, P., Bird, A., and Reinberg, D. (1999) Genes Dev. 13, 1924-1935
77. Kim, J., Sif, S., Jones, B., Jackson, A., Koipally, J., Heller, E., Winandy, S., Viel, A., Sawyer, A., Ikeda, T., Kingston, R., and Georgopoulos, K. (1999) Immunity 10, 345-355
78. Xue, Y., Wong, J., Moreno, G. T., Young, M. K., Cote, J., and Wang, W. (1998) Mol. Cell 2, 851-861
79. Pongubala, J. M., and Atchison, M. L. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 127-132