Rapid periodic binding and displacement of the glucocorticoid receptor during chromatin remodeling

Molecular Cell

Volumn 14, Issue 2, 2004, Pages 163-174

  Nagaich, Akhilesh K ^a   Walker, Dawn A ^a   Wolford, Ron ^a   Hager, Gordon L ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; GLUCOCORTICOID RECEPTOR; HISTONE; NUCLEOPROTEIN; PROTEIN; PROTEIN SWI; TRANSCRIPTION FACTOR SNF; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CHEMICAL REACTION; CHROMATIN; CROSS LINKING; MOLECULAR MECHANICS; MOUSE MAMMARY TUMOR ONCOVIRUS; NUCLEOSOME; PROMOTER REGION;

ADENOSINE TRIPHOSPHATE; ANIMALS; BINDING SITES; CHROMATIN; CROSS-LINKING REAGENTS; DNA; DNA HELICASES; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FORMALDEHYDE; GENE EXPRESSION REGULATION, VIRAL; GENE TARGETING; HELA CELLS; HISTONES; HUMANS; LASERS; MAMMARY TUMOR VIRUS, MOUSE; MICE; MODELS, BIOLOGICAL; NUCLEAR PROTEINS; NUCLEOSOMES; POINT MUTATION; PRECIPITIN TESTS; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; RECEPTORS, GLUCOCORTICOID; TEMPLATES, GENETIC; TIME FACTORS; TRANSCRIPTION FACTORS; ULTRAVIOLET RAYS;

MOUSE MAMMARY TUMOR VIRUS; ONCOVIRINAE;

EID: 1942502820     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(04)00178-9     Document Type: Article

References (49)

1. Aoyagi S., Hayes J.J. hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist-diffusion mechanism. Mol. Cell. Biol. 22:2002;7484-7490.
2. Bazett-Jones D.P., Cote J., Landel C.C., Peterson C.L., Workman J.L. The SWI/SNF complex creates loop domains in DNA and polynucleosome arrays and can disrupt DNA-histone contacts within these domains. Mol. Cell. Biol. 19:1999;1470-1478.
3. Becker P.B. Nucleosome sliding. facts and fiction EMBO J. 21:2002;4749-4753.
4. Becker M., Baumann C.T., John S., Walker D., Vigneron M., McNally J.G., Hager G.L. Dynamic behavior of transcription factors on a natural promoter in living cells. EMBO Rep. 3:2002;1188-1194.
5. Blomquist P., Li Q., Wrange O. The affinity of nuclear factor 1 for its DNA site is drastically reduced by nucleosome organization irrespective of its rotational or translational position. J. Biol. Chem. 271:1996;153-159.
6. Bonaldi T., Langst G., Strohner R., Becker P.B., Bianchi M.E. The DNA chaperone HMGB1 facilitates ACF/CHRAC-dependent nucleosome sliding. EMBO J. 21:2002;6865-6873.
7. Boyer L.A., Shao X., Ebright R.H., Peterson C.L. Roles of the histone H2A-H2B dimers and the (H3-H4)(2) tetramer in nucleosome remodeling by the SWI-SNF complex. J. Biol. Chem. 275:2000;11545-11552.
8. Bresnick E.H., Bustin M., Marsaud V., Richard-Foy H., Hager G.L. The transcriptionally-active MMTV promoter is depleted of histone H1. Nucleic Acids Res. 20:1992;273-278.
9. Burakov D., Crofts L.A., Chang C.P., Freedman L.P. Reciprocal recruitment of DRIP/mediator and p160 coactivator complexes in vivo by estrogen receptor. J. Biol. Chem. 277:2002;14359-14362.
10. Cote J., Utley R.T., Workman J.L. Basic analysis of transcription factor binding to nucleosomes. Methods Mol. Genetics. 6:1995;108-129.
11. Dimitrov S.I., Moss T. UV laser-induced protein-DNA crosslinking. Methods Mol. Biol. 148:2001;395-402.
12. Donehower L.A., Huang A.L., Hager G.L. Regulatory and coding potential of the mouse mammary tumor virus long terminal redundancy. J. Virol. 37:1981;226-238.
13. Douki T., Angelov D., Cadet J. UV laser photolysis of DNA. effect of duplex stability on charge-transfer efficiency J. Am. Chem. Soc. 123:2001;11360-11366.
14. Dundr M., Hoffmann-Rohrer U., Hu Q., Grummt I., Rothblum L.I., Phair R.D., Misteli T. A kinetic framework for a mammalian RNA polymerase in vivo. Science. 298:2002;1623-1626.
15. Fan H.Y., He X., Kingston R.E., Narlikar G.J. Distinct strategies to make nucleosomal DNA accessible. Mol. Cell. 11:2003;1311-1322.
16. Fletcher T.M., Ryu B.-W., Baumann C.T., Warren B.S., Fragoso G., John S., Hager G.L. Structure and dynamic properties of the glucocorticoid receptor-induced chromatin transition at the MMTV promoter. Mol. Cell. Biol. 20:2000;6466-6475.
17. Fletcher T.M., Xiao N., Mautino G., Baumann C.T., Wolford R., Warren B.S., Hager G.L. ATP-dependent mobilization of the glucocorticoid receptor during chromatin remodeling. Mol. Cell. Biol. 22:2002;3255-3263.
18. Fragoso G., John S., Roberts M.S., Hager G.L. Nucleosome positioning on the MMTV LTR results from the frequency-biased occupancy of multiple frames. Genes Dev. 9:1995;1933-1947.
19. Fragoso G., Pennie W.D., John S., Hager G.L. The position and length of the steroid-dependent hypersensitive region in the mouse mammary tumor virus long terminal repeat are invariant despite multiple nucleosome B frames. Mol. Cell. Biol. 18:1998;3633-3644.
20. Freeman B.C., Yamamoto K.R. Disassembly of transcriptional regulatory complexes by molecular chaperones. Science. 296:2002;2232-2235.
21. Fryer C.J., Archer T.K. Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex. Nature. 393:1998;88-91.
22. Hager G.L. Understanding nuclear receptor function. from DNA to chromatin to the interphase nucleus Prog. Nucleic Acid Res. Mol Biol. 66:2001;279-305.
23. Hager G.L., Archer T.K., Fragoso G., Bresnick E.H., Tsukagoshi Y., John S., Smith C.L. Influence of chromatin structure on the binding of transcription factors to DNA. Cold Spring Harb. Symp. Quant. Biol. 58:1993;63-71.
24. Hager G.L., Elbi C.C., Becker M. Protein dynamics in the nuclear compartment. Curr. Opin. Genet. Dev. 12:2002;137-141.
25. Hockensmith J.W., Kubasek W.L., Vorachek W.R., Evertsz E.M., von Hippel P.H. Laser cross-linking of protein-nucleic acid complexes. Methods Enzymol. 208:1991;211-236.
26. Hung F., Luo D., Sauve D.M., Muller M.T., Roberge M. Characterization of topoisomerase II-DNA interaction and identification of a DNA-binding domain by ultraviolet laser crosslinking. FEBS Lett. 380:1996;127-132.
27. Jaskelioff M., Gavin I.M., Peterson C.L., Logie C. SWI-SNF-mediated nucleosome remodeling. role of histone octamer mobility in the persistence of the remodeled state Mol. Cell. Biol. 20:2000;3058-3068.
28. Kang J.G., Hamiche A., Wu C. GAL4 directs nucleosome sliding induced by NURF. EMBO J. 21:2002;1406-1413.
29. Kuo M.H., Allis C.D. In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment. Methods. 19:1999;425-433.
30. Langst G., Becker P.B. ISWI induces nucleosome sliding on nicked DNA. Mol. Cell. 8:2001;1085-1092.
31. Lorch Y., Zhang M., Kornberg R.D. Histone octamer transfer by a chromatin-remodeling complex. Cell. 96:1999;389-392.
32. McNally J.G., Mueller W.G., Walker D., Wolford R.G., Hager G.L. The glucocorticoid receptor. rapid exchange with regulatory sites in living cells Science. 287:2000;1262-1265.
33. Misteli T. Protein dynamics. implications for nuclear architecture and gene expression Science. 291:2001;843-847.
34. Muchardt C., Yaniv M. A human homologue of Saccharomyces cerevisiae SNF2/SWI2 and Drosophila brm genes potentiates transcriptional activation by the glucocorticoid receptor. EMBO J. 12:1993;4279-4290.
35. Narlikar G.J., Phelan M.L., Kingston R.E. Generation and interconversion of multiple distinct nucleosomal states as a mechanism for catalyzing chromatin fluidity. Mol. Cell. 8:2001;1219-1230.
36. Payvar F., Firestone G.L., Ross S.R., Chandler V.L., Wrange O., Carlstedt-Duke J., Gustafsson J.A., Yamamoto K.R. Multiple specific binding sites for purified glucocorticoid receptors on mammary tumor virus DNA. J. Cell. Biochem. 19:1982;241-247.
37. Perlmann T., Wrange O. Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome. EMBO J. 7:1988;3073-3079.
38. Peterson C.L. Chromatin remodeling. nucleosomes bulging at the seams Curr. Biol. 12:2002;R245-R247.
39. Ponta H., Kennedy N., Skroch P., Hynes N.E., Groner B. Hormonal response region in the mouse mammary tumor virus long terminal repeat can be dissociated from the proviral promoter and has enhancer properties. Proc. Natl. Acad. Sci. USA. 82:1985;1020-1024.
40. Reid G., Hubner M.R., Metivier R., Brand H., Denger S., Manu D., Beaudouin J., Ellenberg J., Gannon F. Cyclic, proteasome-mediated turnover of unliganded and liganded ERα on responsive promoters is an integral feature of estrogen signaling. Mol. Cell. 11:2003;695-707.
41. Richard-Foy H., Hager G.L. Sequence specific positioning of nucleosomes over the steroid-inducible MMTV promoter. EMBO J. 6:1987;2321-2328.
42. Scheidereit C., Geisse S., Westphal H.M., Beato M. The glucocorticoid receptor binds to defined nucleotide sequences near the promoter of mouse mammary tumour virus. Nature. 304:1983;749-752.
43. Shang Y., Hu X., DiRenzo J., Lazar M.A., Brown M. Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription. Cell. 103:2000;843-852.
44. Truss M., Bartsch J., Schelbert A., Hache R.J., Beato M. Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo. EMBO J. 14:1995;1737-1751.
45. Venditti P., Di Croce L., Kauer M., Blank T., Becker P.B., Beato M. Assembly of MMTV promoter minichromosomes with positioned nucleosomes precludes NF1 access but not restriction enzyme cleavage. Nucleic Acids Res. 26:1998;3657-3666.
46. Wallberg A.E., Neely K.E., Hassan A.H., Gustafsson J.-Å., Workman J.L., Wright A.P.H. Recruitment of the SWI-SNF chromatin remodeling complex as a mechanism of gene activation by the glucocorticoid receptor tau1 activation domain. Mol. Cell. Biol. 20:2000;2004-2013.
47. Warren B.S., Kusk P., Wolford R.G., Hager G.L. Purification and stabilization of transcriptionally active glucocorticoid receptor. J. Biol. Chem. 271:1996;11434-11440.
48. Whitehouse I., Flaus A., Cairns B.R., White M.F., Workman J.L., Owen-Hughes T. Nucleosome mobilization catalysed by the yeast SWI/SNF complex. Nature. 400:1999;784-787.
49. Yoshinaga S.K., Peterson C.L., Herskowitz I., Yamamoto K.R. Roles of SWI1, SWI2, and SWI3 proteins for transcriptional enhancement by steroid receptors. Science. 258:1992;1598-1604.