-
2
-
-
8844265508
-
Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins
-
Ringrose, L. & Paro, R. Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins. Annu. Rev. Genet. 38, 413-443 (2004).
-
(2004)
Annu. Rev. Genet.
, vol.38
, pp. 413-443
-
-
Ringrose, L.1
Paro, R.2
-
3
-
-
2642570305
-
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
-
Schubeler, D. et al. The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. Genes Dev. 18, 1263-1271 (2004).
-
(2004)
Genes Dev.
, vol.18
, pp. 1263-1271
-
-
Schubeler, D.1
-
4
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
Bernstein, B.E. et al. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 120, 169-181 (2005).
-
(2005)
Cell
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
-
5
-
-
2942518343
-
Mapping global histone acetylation patterns to gene expression
-
Kurdistani, S.K., Tavazoie, S. & Grunstein, M. Mapping global histone acetylation patterns to gene expression. Cell 117, 721-733 (2004).
-
(2004)
Cell
, vol.117
, pp. 721-733
-
-
Kurdistani, S.K.1
Tavazoie, S.2
Grunstein, M.3
-
6
-
-
0036299092
-
The histone variant H3.3 marks active chromatin by replication- independent nucleosome assembly
-
Ahmad, K. & Henikoff, S. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol. Cell 9, 1191-1200 (2002).
-
(2002)
Mol. Cell
, vol.9
, pp. 1191-1200
-
-
Ahmad, K.1
Henikoff, S.2
-
7
-
-
0742304304
-
Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis
-
Tagami, H., Ray-Gallet, D., Almouzni, G. & Nakatani, Y. Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell 116, 51-61 (2004).
-
(2004)
Cell
, vol.116
, pp. 51-61
-
-
Tagami, H.1
Ray-Gallet, D.2
Almouzni, G.3
Nakatani, Y.4
-
8
-
-
12144289862
-
From silencing to gene expression: Real-time analysis in single cells
-
Janicki, S.M. et al. From silencing to gene expression: Real-time analysis in single cells. Cell 116, 683-698 (2004).
-
(2004)
Cell
, vol.116
, pp. 683-698
-
-
Janicki, S.M.1
-
9
-
-
17044394787
-
Transcriptional activation triggers deposition and removal of the histone variant H3.3
-
Schwartz, B.E. & Ahmad, K. Transcriptional activation triggers deposition and removal of the histone variant H3.3. Genes Dev. 19, 804-814 (2005).
-
(2005)
Genes Dev.
, vol.19
, pp. 804-814
-
-
Schwartz, B.E.1
Ahmad, K.2
-
10
-
-
17644369665
-
Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division
-
Chow, C.M. et al. Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division. EMBO Rep. 6, 354-360 (2005).
-
(2005)
EMBO Rep.
, vol.6
, pp. 354-360
-
-
Chow, C.M.1
-
11
-
-
1242342240
-
Histone H3.3 is enriched in covalent modifications associated with active chromatin
-
McKittrick, E., Gafken, P.R., Ahmad, K. & Henikoff, S. Histone H3.3 is enriched in covalent modifications associated with active chromatin. Proc. Natl. Acad. Sci. USA 101, 1525-1530 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1525-1530
-
-
McKittrick, E.1
Gafken, P.R.2
Ahmad, K.3
Henikoff, S.4
-
12
-
-
0025149098
-
Sequence analysis of acetylation and methylation in two histone H3 variants of alfalfa
-
Waterborg, J.H. Sequence analysis of acetylation and methylation in two histone H3 variants of alfalfa. J. Biol. Chem. 265, 17157-17161 (1990).
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 17157-17161
-
-
Waterborg, J.H.1
-
13
-
-
13544271154
-
Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications
-
Johnson, L. et al. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res. 32, 6511-6518 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 6511-6518
-
-
Johnson, L.1
-
14
-
-
0038611015
-
Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice
-
de Boer, E. et al. Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice. Proc. Natl. Acad. Sci. USA 100, 7480-7485 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7480-7485
-
-
De Boer, E.1
-
15
-
-
10644297436
-
Coordination of replication and transcription along a Drosophila chromosome
-
MacAlpine, D.M., Rodriguez, H.K. & Bell, S.P. Coordination of replication and transcription along a Drosophila chromosome. Genes Dev. 18, 3094-3105 (2004).
-
(2004)
Genes Dev.
, vol.18
, pp. 3094-3105
-
-
MacAlpine, D.M.1
Rodriguez, H.K.2
Bell, S.P.3
-
16
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
Martens, J.H. et al. The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J. 24, 800-812 (2005).
-
(2005)
EMBO J.
, vol.24
, pp. 800-812
-
-
Martens, J.H.1
-
17
-
-
8444245244
-
Global nucleosome occupancy in yeast
-
Bernstein, B.E., Liu, C.L., Humphrey, E.L., Perlstein, E.O. & Schreiber, S.L. Global nucleosome occupancy in yeast. Genome Biol. 5, R62 (2004).
-
(2004)
Genome Biol.
, vol.5
-
-
Bernstein, B.E.1
Liu, C.L.2
Humphrey, E.L.3
Perlstein, E.O.4
Schreiber, S.L.5
-
18
-
-
3543023310
-
Evidence for nucleosome depletion at active regulatory regions genome-wide
-
Lee, C.K., Shibata, Y., Rao, B., Strahl, B.D. & Lieb, J.D. Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat. Genet. 36, 900-905 (2004).
-
(2004)
Nat. Genet.
, vol.36
, pp. 900-905
-
-
Lee, C.K.1
Shibata, Y.2
Rao, B.3
Strahl, B.D.4
Lieb, J.D.5
-
19
-
-
0035795424
-
Centromeres are specialized replication domains in heterochromatin
-
Ahmad, K. & Henikoff, S. Centromeres are specialized replication domains in heterochromatin. J. Cell Biol. 153, 101-110 (2001).
-
(2001)
J. Cell Biol.
, vol.153
, pp. 101-110
-
-
Ahmad, K.1
Henikoff, S.2
-
20
-
-
8644287437
-
Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II
-
Schwabish, M.A. & Struhl, K. Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II. Mol. Cell. Biol. 24, 10111-10117 (2004).
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 10111-10117
-
-
Schwabish, M.A.1
Struhl, K.2
-
21
-
-
9144274420
-
Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo
-
Kristjuhan, A. & Svejstrup, J.Q. Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo. EMBO J. 23, 4243-4252 (2004).
-
(2004)
EMBO J.
, vol.23
, pp. 4243-4252
-
-
Kristjuhan, A.1
Svejstrup, J.Q.2
-
22
-
-
0038094501
-
Nucleosomes unfold completely at a transcriptionally active promoter
-
Boeger, H., Griesenbeck, J., Strattan, J.S. & Kornberg, R.D. Nucleosomes unfold completely at a transcriptionally active promoter. Mol. Cell 11, 1587-1598 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 1587-1598
-
-
Boeger, H.1
Griesenbeck, J.2
Strattan, J.S.3
Kornberg, R.D.4
-
23
-
-
0038094502
-
Histones are first hyperacetylated and then lose contact with the activated PH05 promoter
-
Reinke, H. & Horz, W. Histones are first hyperacetylated and then lose contact with the activated PH05 promoter. Mol. Cell 11, 1599-1607 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 1599-1607
-
-
Reinke, H.1
Horz, W.2
-
24
-
-
22744432660
-
Genome-scale identification of nucleosome positions in S. cerevisiae
-
Yuan, G.C. et al. Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309, 626-630 (2005).
-
(2005)
Science
, vol.309
, pp. 626-630
-
-
Yuan, G.C.1
-
25
-
-
1242319580
-
Histone H3 variants and modifications on transcribed genes
-
Workman, J.L. & Abmayr, S.M. Histone H3 variants and modifications on transcribed genes. Proc. Natl. Acad. Sci. USA 101, 1429-1430 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1429-1430
-
-
Workman, J.L.1
Abmayr, S.M.2
-
26
-
-
2942746179
-
Histone variants, nucleosome assembly and epigenetic inheritance
-
Henikoff, S., Furuyama, T. & Ahmad, A. Histone variants, nucleosome assembly and epigenetic inheritance. Trends Genet. 20, 320-326 (2004).
-
(2004)
Trends Genet.
, vol.20
, pp. 320-326
-
-
Henikoff, S.1
Furuyama, T.2
Ahmad, A.3
-
27
-
-
0027439527
-
Unwinding dosage compensation
-
Henikoff, S. & Meneely, P. Unwinding dosage compensation. Cell 72, 1-2 (1993).
-
(1993)
Cell
, vol.72
, pp. 1-2
-
-
Henikoff, S.1
Meneely, P.2
-
28
-
-
0035943734
-
Linking global histone acetylation to the transcription enhancement of X-chromosomal genes in Drosophila males
-
Smith, E.R., Allis, C.D. & Lucchesi, J.C. Linking global histone acetylation to the transcription enhancement of X-chromosomal genes in Drosophila males. J. Biol. Chem. 276, 31483-31486 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 31483-31486
-
-
Smith, E.R.1
Allis, C.D.2
Lucchesi, J.C.3
-
29
-
-
20444410082
-
Dosage compensation in flies: Mechanism, models, mystery
-
Straub, T., Dahlsveen, I.K. & Becker, P.B. Dosage compensation in flies: Mechanism, models, mystery. FEBS Lett. 579, 3258-3263 (2005).
-
(2005)
FEBS Lett.
, vol.579
, pp. 3258-3263
-
-
Straub, T.1
Dahlsveen, I.K.2
Becker, P.B.3
-
30
-
-
0032530393
-
Complex formation by the Drosophila MSL proteins: Role of the MSL2 RING finger in protein complex assembly
-
Copps, K. et al. Complex formation by the Drosophila MSL proteins: role of the MSL2 RING finger in protein complex assembly. EMBO J. 17, 5409-5417 (1998).
-
(1998)
EMBO J.
, vol.17
, pp. 5409-5417
-
-
Copps, K.1
-
31
-
-
3543008920
-
High-resolution genome-wide mapping of histone modifications
-
Roh, T.Y., Ngau, W.C., Cui, K., Landsman, D. & Zhao, K. High-resolution genome-wide mapping of histone modifications. Nat. Biotechnol. 22, 1013-1016 (2004).
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1013-1016
-
-
Roh, T.Y.1
Ngau, W.C.2
Cui, K.3
Landsman, D.4
Zhao, K.5
-
32
-
-
20044384522
-
Mapping of genetic and epigenetic regulatory networks using microarrays
-
van Steensel, B. Mapping of genetic and epigenetic regulatory networks using microarrays. Nat. Genet. 37 Suppl, S18-S24 (2005).
-
(2005)
Nat. Genet.
, vol.37
, Issue.SUPPL.
-
-
Van Steensel, B.1
-
33
-
-
3042781030
-
Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27
-
Kirmizis, A. et al. Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27. Genes Dev. 18, 1592-1605 (2004).
-
(2004)
Genes Dev.
, vol.18
, pp. 1592-1605
-
-
Kirmizis, A.1
-
34
-
-
4344685735
-
Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly
-
Sarraf, S.A. & Stancheva, I. Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly. Mol. Cell 15, 595-605 (2004).
-
(2004)
Mol. Cell
, vol.15
, pp. 595-605
-
-
Sarraf, S.A.1
Stancheva, I.2
-
35
-
-
0033518179
-
The RCAF complex mediates chromatin assembly during DNA replication and repair
-
Tyler, J.K. et al. The RCAF complex mediates chromatin assembly during DNA replication and repair. Nature 402, 555-560 (1999).
-
(1999)
Nature
, vol.402
, pp. 555-560
-
-
Tyler, J.K.1
-
36
-
-
15444376394
-
Replication-independent core histone dynamics at transcriptionally active loci in vivo
-
Thiriet, C. & Hayes, J.J. Replication-independent core histone dynamics at transcriptionally active loci in vivo. Genes Dev. 19, 677-682 (2005).
-
(2005)
Genes Dev.
, vol.19
, pp. 677-682
-
-
Thiriet, C.1
Hayes, J.J.2
-
37
-
-
0033853988
-
Intergenic transcription and developmental remodeling of chromatin subdomains in the human β-globin locus
-
Gribnau, J., Diderich, K., Pruzina, S., Calzolari, R. & Fraser, P. Intergenic transcription and developmental remodeling of chromatin subdomains in the human β-globin locus. Mol. Cell 5, 377-386 (2000).
-
(2000)
Mol. Cell
, vol.5
, pp. 377-386
-
-
Gribnau, J.1
Diderich, K.2
Pruzina, S.3
Calzolari, R.4
Fraser, P.5
-
38
-
-
0023332565
-
Novel transcripts from the Ultrabithorax domain of the bithorax complex
-
Lipshitz, H.D., Peattie, D.A. & Hogness, D.S. Novel transcripts from the Ultrabithorax domain of the bithorax complex. Genes Dev. 1, 307-322 (1987).
-
(1987)
Genes Dev.
, vol.1
, pp. 307-322
-
-
Lipshitz, H.D.1
Peattie, D.A.2
Hogness, D.S.3
-
39
-
-
20444368036
-
Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
Wyers, F. et al. Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 121, 725-737 (2005).
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
-
40
-
-
12344291073
-
Dark matter in the genome: Evidence of widespread transcription detected by microarray tiling experiments
-
Johnson, J.M., Edwards, S., Shoemaker, D. & Schadt, E.E. Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. Trends Genet. 21, 93-102 (2005).
-
(2005)
Trends Genet.
, vol.21
, pp. 93-102
-
-
Johnson, J.M.1
Edwards, S.2
Shoemaker, D.3
Schadt, E.E.4
-
41
-
-
0036848563
-
Transcription through the iab-7 cis-regulatory domain of the bithorax complex interferes with maintenance of Polycomb-mediated silencing
-
Hogga, I. & Karch, F. Transcription through the iab-7 cis-regulatory domain of the bithorax complex interferes with maintenance of Polycomb-mediated silencing. Development 129, 4915-4922 (2002).
-
(2002)
Development
, vol.129
, pp. 4915-4922
-
-
Hogga, I.1
Karch, F.2
-
42
-
-
0036841029
-
Transcription through intergenic chromosomal memory elements of the Drosophila bithorax complex correlates with an epigenetic switch
-
Rank, G., Prestel, M. & Paro, R. Transcription through intergenic chromosomal memory elements of the Drosophila bithorax complex correlates with an epigenetic switch. Mol. Cell. Biol. 22, 8026-8034 (2002).
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 8026-8034
-
-
Rank, G.1
Prestel, M.2
Paro, R.3
-
43
-
-
15444361900
-
Intergenic transcription through a polycomb group response element counteracts silencing
-
Schmitt, S., Prestel, M. & Paro, R. Intergenic transcription through a polycomb group response element counteracts silencing. Genes Dev. 19, 697-708 (2005).
-
(2005)
Genes Dev.
, vol.19
, pp. 697-708
-
-
Schmitt, S.1
Prestel, M.2
Paro, R.3
-
44
-
-
0024284041
-
Characterization and use of the Drosophila metallothionein promoter in cultured Drosophila melanogaster cells
-
Bunch, T.A., Grinblat, Y. & Goldstein, L.S. Characterization and use of the Drosophila metallothionein promoter in cultured Drosophila melanogaster cells. Nucleic Acids Res. 16, 1043-1061 (1988).
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 1043-1061
-
-
Bunch, T.A.1
Grinblat, Y.2
Goldstein, L.S.3
-
45
-
-
0032917076
-
A minimal peptide substrate in biotin holoenzyme synthetase-catalyzed biotinylation
-
Beckett, D., Kovaleva, E. & Schatz, P.J. A minimal peptide substrate in biotin holoenzyme synthetase-catalyzed biotinylation. Protein Sci. 8, 921-929 (1999).
-
(1999)
Protein Sci.
, vol.8
, pp. 921-929
-
-
Beckett, D.1
Kovaleva, E.2
Schatz, P.J.3
-
46
-
-
0042691510
-
Rapid selection of Drosophila S2 cells with the puromycin resistance gene
-
Iwaki, T., Figuera, M., Ploplis, V.A. & Castellino, F.J. Rapid selection of Drosophila S2 cells with the puromycin resistance gene. Biotechniques 35, 482-484, 486 (2003).
-
(2003)
Biotechniques
, vol.35
, pp. 482-484
-
-
Iwaki, T.1
Figuera, M.2
Ploplis, V.A.3
Castellino, F.J.4
-
48
-
-
0034681115
-
Heterochromatic deposition of centromeric histone H3-like proteins
-
Henikoff, S., Ahmad, K., Platero, J.S. & van Steensel, B. Heterochromatic deposition of centromeric histone H3-like proteins. Proc. Natl. Acad. Sci. USA 97, 716-721 (2000).
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 716-721
-
-
Henikoff, S.1
Ahmad, K.2
Platero, J.S.3
Van Steensel, B.4
-
49
-
-
0036200147
-
Conserved organization of centromeric chromatin in flies and humans
-
Blower, M.D., Sullivan, B.A. & Karpen, G.H. Conserved organization of centromeric chromatin in flies and humans. Dev. Cell 2, 319-330 (2002).
-
(2002)
Dev. Cell
, vol.2
, pp. 319-330
-
-
Blower, M.D.1
Sullivan, B.A.2
Karpen, G.H.3
-
50
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
Pollack, J.R. et al. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat. Genet. 23, 41-46 (1999).
-
(1999)
Nat. Genet.
, vol.23
, pp. 41-46
-
-
Pollack, J.R.1
|