메뉴 건너뛰기




Volumn 74, Issue , 2011, Pages 1-33

Bacterial Strategies for Growth on Aromatic Compounds

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC COMPOUND; REACTIVE OXYGEN METABOLITE; BACTERIAL PROTEIN; ORGANIC COMPOUND;

EID: 79953220134     PISSN: 00652164     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-387022-3.00005-7     Document Type: Chapter
Times cited : (17)

References (160)
  • 1
    • 0024357889 scopus 로고
    • Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway
    • Abril M.A., Michan C., Timmis K.N., Ramos J.L. Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J. Bacteriol. 1989, 171:6782-6790.
    • (1989) J. Bacteriol. , vol.171 , pp. 6782-6790
    • Abril, M.A.1    Michan, C.2    Timmis, K.N.3    Ramos, J.L.4
  • 2
    • 0003815886 scopus 로고    scopus 로고
    • Agency for Toxic Substances and Disease Registry (ATSDR), U.S. Department of Health and Human Services, Washington, DC
    • Toxicological Profile for Benzene 2007, Agency for Toxic Substances and Disease Registry (ATSDR), U.S. Department of Health and Human Services, Washington, DC.
    • (2007) Toxicological Profile for Benzene
  • 3
    • 0032487127 scopus 로고    scopus 로고
    • Growth kinetics of Pseudomonas putida G7 on naphthalene and occurrence of naphthalene toxicity during nutrient deprivation
    • Ahn I.S., Ghiorse W.C., Lion L.W., Shuler M.L. Growth kinetics of Pseudomonas putida G7 on naphthalene and occurrence of naphthalene toxicity during nutrient deprivation. Biotechnol. Bioeng. 1998, 59:587-594.
    • (1998) Biotechnol. Bioeng. , vol.59 , pp. 587-594
    • Ahn, I.S.1    Ghiorse, W.C.2    Lion, L.W.3    Shuler, M.L.4
  • 5
    • 0032825377 scopus 로고    scopus 로고
    • Adaptation of Comamonas testosteroni TA441 to utilization of phenol by spontaneous mutation of the gene for a trans-acting factor
    • Arai H., Akahira S., Ohishi T., Kudo T. Adaptation of Comamonas testosteroni TA441 to utilization of phenol by spontaneous mutation of the gene for a trans-acting factor. Mol. Microbiol. 1999, 33:1132-1140.
    • (1999) Mol. Microbiol. , vol.33 , pp. 1132-1140
    • Arai, H.1    Akahira, S.2    Ohishi, T.3    Kudo, T.4
  • 6
    • 0032866061 scopus 로고    scopus 로고
    • Genetic organization and characteristics of the 3-(3-hydroxyphenyl)propionic acid degradation pathway of Comamonas testosteroni TA441
    • Arai H., Yamamoto T., Ohishi T., Shimizu T., Nakata T., Kudo T. Genetic organization and characteristics of the 3-(3-hydroxyphenyl)propionic acid degradation pathway of Comamonas testosteroni TA441. Microbiology 1999, 145(Pt. 10):2813-2820.
    • (1999) Microbiology , vol.145 , Issue.PART 10 , pp. 2813-2820
    • Arai, H.1    Yamamoto, T.2    Ohishi, T.3    Shimizu, T.4    Nakata, T.5    Kudo, T.6
  • 7
    • 0031859323 scopus 로고    scopus 로고
    • Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: Catabolic genes dispersed on the genome
    • Armengaud J., Happe B., Timmis K.N. Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: Catabolic genes dispersed on the genome. J. Bacteriol. 1998, 180:3954-3966.
    • (1998) J. Bacteriol. , vol.180 , pp. 3954-3966
    • Armengaud, J.1    Happe, B.2    Timmis, K.N.3
  • 8
    • 0038455693 scopus 로고    scopus 로고
    • Implication of two glutathione S-transferases in the optimal metabolism of m-toluate by Sphingomonas yanoikuyae B1
    • Bae M., Sul W.J., Koh S.C., Lee J.H., Zylstra G.J., Kim Y.M., Kimr E. Implication of two glutathione S-transferases in the optimal metabolism of m-toluate by Sphingomonas yanoikuyae B1. Antonie Van Leeuwenhoek 2003, 84:25-30.
    • (2003) Antonie Van Leeuwenhoek , vol.84 , pp. 25-30
    • Bae, M.1    Sul, W.J.2    Koh, S.C.3    Lee, J.H.4    Zylstra, G.J.5    Kim, Y.M.6    Kimr, E.7
  • 9
    • 0021330498 scopus 로고
    • Suicide inactivation of catechol 2,3-dioxygenase from Pseudomonas putida mt-2 by 3-halocatechols
    • Bartels I., Knackmuss H.J., Reineke W. Suicide inactivation of catechol 2,3-dioxygenase from Pseudomonas putida mt-2 by 3-halocatechols. Appl. Environ. Microbiol. 1984, 47:500-505.
    • (1984) Appl. Environ. Microbiol. , vol.47 , pp. 500-505
    • Bartels, I.1    Knackmuss, H.J.2    Reineke, W.3
  • 10
    • 0032849333 scopus 로고    scopus 로고
    • Occurrence and expression of glutathione-S-transferase-encoding bphK genes in Burkholderia sp. strain LB400 and other biphenyl-utilizing bacteria
    • Bartels F., Backhaus S., Moore E.R., Timmis K.N., Hofer B. Occurrence and expression of glutathione-S-transferase-encoding bphK genes in Burkholderia sp. strain LB400 and other biphenyl-utilizing bacteria. Microbiology 1999, 145(Pt. 10):2821-2834.
    • (1999) Microbiology , vol.145 , Issue.PART 10 , pp. 2821-2834
    • Bartels, F.1    Backhaus, S.2    Moore, E.R.3    Timmis, K.N.4    Hofer, B.5
  • 11
    • 0032898962 scopus 로고    scopus 로고
    • Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes
    • Beil S., Timmis K.N., Pieper D.H. Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes. J. Bacteriol. 1999, 181:341-346.
    • (1999) J. Bacteriol. , vol.181 , pp. 341-346
    • Beil, S.1    Timmis, K.N.2    Pieper, D.H.3
  • 12
    • 0035902462 scopus 로고    scopus 로고
    • Stationary-phase mutation in the bacterial chromosome: Recombination protein and DNA polymerase IV dependence
    • Bull H.J., Lombardo M.J., Rosenberg S.M. Stationary-phase mutation in the bacterial chromosome: Recombination protein and DNA polymerase IV dependence. Proc. Natl. Acad. Sci. USA 2001, 98:8334-8341.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 8334-8341
    • Bull, H.J.1    Lombardo, M.J.2    Rosenberg, S.M.3
  • 13
    • 35348842602 scopus 로고    scopus 로고
    • Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals
    • Busch A., Lacal J., Martos A., Ramos J.L., Krell T. Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals. Proc. Natl. Acad. Sci. USA 2007, 104:13774-13779.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 13774-13779
    • Busch, A.1    Lacal, J.2    Martos, A.3    Ramos, J.L.4    Krell, T.5
  • 14
    • 0031060718 scopus 로고    scopus 로고
    • Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases
    • Butler C.S., Mason J.R. Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases. Adv. Microb. Physiol. 1997, 38:47-84.
    • (1997) Adv. Microb. Physiol. , vol.38 , pp. 47-84
    • Butler, C.S.1    Mason, J.R.2
  • 15
    • 71349086975 scopus 로고    scopus 로고
    • Biodegradation of aromatic compounds: Current status and opportunities for biomolecular approaches
    • Cao B., Nagarajan K., Loh K.C. Biodegradation of aromatic compounds: Current status and opportunities for biomolecular approaches. Appl. Microbiol. Biotechnol. 2009, 85:207-228.
    • (2009) Appl. Microbiol. Biotechnol. , vol.85 , pp. 207-228
    • Cao, B.1    Nagarajan, K.2    Loh, K.C.3
  • 16
    • 0035863067 scopus 로고    scopus 로고
    • The black cat/white cat principle of signal integration in bacterial promoters
    • Cases I., de Lorenzo V. The black cat/white cat principle of signal integration in bacterial promoters. EMBO J. 2001, 20:1-11.
    • (2001) EMBO J. , vol.20 , pp. 1-11
    • Cases, I.1    de Lorenzo, V.2
  • 17
    • 0028033313 scopus 로고
    • Substrate-specificity of catechol 2,3-dioxygenase encoded by TOL plasmid PWWO of Pseudomonas putida and its relationship to cell-growth
    • Cerdan P., Wasserfallen A., Rekik M., Timmis K.N., Harayama S. Substrate-specificity of catechol 2,3-dioxygenase encoded by TOL plasmid PWWO of Pseudomonas putida and its relationship to cell-growth. J. Bacteriol. 1994, 176:6074-6081.
    • (1994) J. Bacteriol. , vol.176 , pp. 6074-6081
    • Cerdan, P.1    Wasserfallen, A.2    Rekik, M.3    Timmis, K.N.4    Harayama, S.5
  • 18
    • 33646477129 scopus 로고    scopus 로고
    • Adaptive responses and cellular behaviour of biphenyl-degrading bacteria toward polychlorinated biphenyls
    • Chavez F.P., Gordillo F., Jerez C.A. Adaptive responses and cellular behaviour of biphenyl-degrading bacteria toward polychlorinated biphenyls. Biotechnol. Adv. 2006, 24:309-320.
    • (2006) Biotechnol. Adv. , vol.24 , pp. 309-320
    • Chavez, F.P.1    Gordillo, F.2    Jerez, C.A.3
  • 19
    • 0037352256 scopus 로고    scopus 로고
    • Expansion of growth substrate range in Pseudomonas putida F1 by mutations in both cymR and todS, which recruit a ring-fission hydrolase CmtE and induce the tod catabolic operon, respectively
    • Choi E.N., Cho M.C., Kim Y., Kim C.K., Lee K. Expansion of growth substrate range in Pseudomonas putida F1 by mutations in both cymR and todS, which recruit a ring-fission hydrolase CmtE and induce the tod catabolic operon, respectively. Microbiology 2003, 149:795-805.
    • (2003) Microbiology , vol.149 , pp. 795-805
    • Choi, E.N.1    Cho, M.C.2    Kim, Y.3    Kim, C.K.4    Lee, K.5
  • 20
    • 0036525713 scopus 로고    scopus 로고
    • Protein engineering of oxygenases for biocatalysis
    • Cirino P.C., Arnold F.H. Protein engineering of oxygenases for biocatalysis. Curr. Opin. Chem. Biol. 2002, 6:130-135.
    • (2002) Curr. Opin. Chem. Biol. , vol.6 , pp. 130-135
    • Cirino, P.C.1    Arnold, F.H.2
  • 21
    • 0034213801 scopus 로고    scopus 로고
    • Evolution of a metabolic pathway for degradation of a toxic xenobiotic: The patchwork approach
    • Copley S.D. Evolution of a metabolic pathway for degradation of a toxic xenobiotic: The patchwork approach. Trends Biochem. Sci. 2000, 25:261-265.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 261-265
    • Copley, S.D.1
  • 23
    • 0033861767 scopus 로고    scopus 로고
    • Effect of dissemination of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on 2,4-D degradation and on bacterial community structure in two different soil horizons
    • Dejonghe W., Goris J., El Fantroussi S., Hofte M., De Vos P., Verstraete W., Top E.M. Effect of dissemination of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on 2,4-D degradation and on bacterial community structure in two different soil horizons. Appl. Environ. Microbiol. 2000, 66:3297-3304.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3297-3304
    • Dejonghe, W.1    Goris, J.2    El Fantroussi, S.3    Hofte, M.4    De Vos, P.5    Verstraete, W.6    Top, E.M.7
  • 24
    • 0028912178 scopus 로고
    • Single amino acids changes in the signal receptor domain of XylR resulted in mutants that stimulate transcription in the absence of effectors
    • Delgado A., Salto R., Marques S., Ramos J.L. Single amino acids changes in the signal receptor domain of XylR resulted in mutants that stimulate transcription in the absence of effectors. J. Biol. Chem. 1995, 270:5144-5150.
    • (1995) J. Biol. Chem. , vol.270 , pp. 5144-5150
    • Delgado, A.1    Salto, R.2    Marques, S.3    Ramos, J.L.4
  • 25
    • 20444417458 scopus 로고    scopus 로고
    • The evolution of IncP catabolic plasmids
    • Dennis J.J. The evolution of IncP catabolic plasmids. Curr. Opin. Biotechnol. 2005, 16:291-298.
    • (2005) Curr. Opin. Biotechnol. , vol.16 , pp. 291-298
    • Dennis, J.J.1
  • 26
    • 16544381551 scopus 로고    scopus 로고
    • Bacterial degradation of aromatic pollutants: A paradigm of metabolic versatility
    • Diaz E. Bacterial degradation of aromatic pollutants: A paradigm of metabolic versatility. Int. Microbiol. 2004, 7:173-180.
    • (2004) Int. Microbiol. , vol.7 , pp. 173-180
    • Diaz, E.1
  • 27
    • 0033772905 scopus 로고    scopus 로고
    • Bacterial promoters triggering biodegradation of aromatic pollutants
    • Diaz E., Prieto M.A. Bacterial promoters triggering biodegradation of aromatic pollutants. Curr. Opin. Biotechnol. 2000, 11:467-475.
    • (2000) Curr. Opin. Biotechnol. , vol.11 , pp. 467-475
    • Diaz, E.1    Prieto, M.A.2
  • 28
    • 42549109171 scopus 로고    scopus 로고
    • Roles of effectors in XylS-dependent transcription activation: Intramolecular domain derepression and DNA binding
    • Dominguez-Cuevas P., Marin P., Busby S., Ramos J.L., Marques S. Roles of effectors in XylS-dependent transcription activation: Intramolecular domain derepression and DNA binding. J. Bacteriol. 2008, 190:3118-3128.
    • (2008) J. Bacteriol. , vol.190 , pp. 3118-3128
    • Dominguez-Cuevas, P.1    Marin, P.2    Busby, S.3    Ramos, J.L.4    Marques, S.5
  • 29
    • 0029864057 scopus 로고    scopus 로고
    • P-Cumate catabolic pathway in Pseudomonas putida Fl: Cloning and characterization of DNA carrying the cmt operon
    • Eaton R.W. p-Cumate catabolic pathway in Pseudomonas putida Fl: Cloning and characterization of DNA carrying the cmt operon. J. Bacteriol. 1996, 178:1351-1362.
    • (1996) J. Bacteriol. , vol.178 , pp. 1351-1362
    • Eaton, R.W.1
  • 30
    • 0030911409 scopus 로고    scopus 로고
    • P-Cymene catabolic pathway in Pseudomonas putida F1: Cloning and characterization of DNA encoding conversion of p-cymene to p-cumate
    • Eaton R.W. p-Cymene catabolic pathway in Pseudomonas putida F1: Cloning and characterization of DNA encoding conversion of p-cymene to p-cumate. J. Bacteriol. 1997, 179:3171-3180.
    • (1997) J. Bacteriol. , vol.179 , pp. 3171-3180
    • Eaton, R.W.1
  • 31
    • 29644446062 scopus 로고    scopus 로고
    • Directed evolution of a ring-cleaving dioxygenase for polychlorinated biphenyl degradation
    • Fortin P.D., MacPherson I., Neau D.B., Bolin J.T., Eltis L.D. Directed evolution of a ring-cleaving dioxygenase for polychlorinated biphenyl degradation. J. Biol. Chem. 2005, 280:42307-42314.
    • (2005) J. Biol. Chem. , vol.280 , pp. 42307-42314
    • Fortin, P.D.1    MacPherson, I.2    Neau, D.B.3    Bolin, J.T.4    Eltis, L.D.5
  • 32
    • 35148899681 scopus 로고    scopus 로고
    • Stress-induced mutagenesis in bacteria
    • Foster P.L. Stress-induced mutagenesis in bacteria. Crit. Rev. Biochem. Mol. Biol. 2007, 42:373-397.
    • (2007) Crit. Rev. Biochem. Mol. Biol. , vol.42 , pp. 373-397
    • Foster, P.L.1
  • 33
    • 0034082905 scopus 로고    scopus 로고
    • Engineering dioxygenases for efficient degradation of environmental pollutants
    • Furukawa K. Engineering dioxygenases for efficient degradation of environmental pollutants. Curr. Opin. Biotechnol. 2000, 11:244-249.
    • (2000) Curr. Opin. Biotechnol. , vol.11 , pp. 244-249
    • Furukawa, K.1
  • 34
    • 3843075198 scopus 로고    scopus 로고
    • Biphenyl dioxygenases: Functional versatilities and directed evolution
    • Furukawa K., Suenaga H., Goto M. Biphenyl dioxygenases: Functional versatilities and directed evolution. J. Bacteriol. 2004, 186:5189-5196.
    • (2004) J. Bacteriol. , vol.186 , pp. 5189-5196
    • Furukawa, K.1    Suenaga, H.2    Goto, M.3
  • 35
    • 4444337310 scopus 로고    scopus 로고
    • Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1
    • Furusawa Y., Nagarajan V., Tanokura M., Masai E., Fukuda M., Senda T. Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1. J. Mol. Biol. 2004, 342:1041-1052.
    • (2004) J. Mol. Biol. , vol.342 , pp. 1041-1052
    • Furusawa, Y.1    Nagarajan, V.2    Tanokura, M.3    Masai, E.4    Fukuda, M.5    Senda, T.6
  • 37
    • 0031753730 scopus 로고    scopus 로고
    • Toxicity assays and naphthalene utilization by natural bacteria selected in marine environments
    • Garcia E.M., Siegert I.G., Suarez P. Toxicity assays and naphthalene utilization by natural bacteria selected in marine environments. Bull. Environ. Contam. Toxicol. 1998, 61:370-377.
    • (1998) Bull. Environ. Contam. Toxicol. , vol.61 , pp. 370-377
    • Garcia, E.M.1    Siegert, I.G.2    Suarez, P.3
  • 39
    • 78650745591 scopus 로고    scopus 로고
    • Growth of Pseudomonas putida F1 on styrene requires increased catechol-2,3-dioxygenase activity, not a new hydrolase
    • George K.W., Kagle J., Junker L., Risen A., Hay A.G. Growth of Pseudomonas putida F1 on styrene requires increased catechol-2,3-dioxygenase activity, not a new hydrolase. Microbiology 2011, 157:89-98.
    • (2011) Microbiology , vol.157 , pp. 89-98
    • George, K.W.1    Kagle, J.2    Junker, L.3    Risen, A.4    Hay, A.G.5
  • 40
    • 0028915920 scopus 로고
    • Spontaneous mutations in pcaH and -G, structural genes for protocatechuate 3,4-dioxygenase in Acinetobacter calcoaceticus
    • Gerischer U., Ornston L.N. Spontaneous mutations in pcaH and -G, structural genes for protocatechuate 3,4-dioxygenase in Acinetobacter calcoaceticus. J. Bacteriol. 1995, 177:1336-1347.
    • (1995) J. Bacteriol. , vol.177 , pp. 1336-1347
    • Gerischer, U.1    Ornston, L.N.2
  • 41
    • 0034029015 scopus 로고    scopus 로고
    • Aromatic hydrocarbon dioxygenases in environmental biotechnology
    • Gibson D.T., Parales R.E. Aromatic hydrocarbon dioxygenases in environmental biotechnology. Curr. Opin. Biotechnol. 2000, 11:236-243.
    • (2000) Curr. Opin. Biotechnol. , vol.11 , pp. 236-243
    • Gibson, D.T.1    Parales, R.E.2
  • 42
    • 0000757667 scopus 로고
    • Microbial degradation of aromatic hydrocarbons
    • Marcel Dekker, Inc., New York, D.T. Gibson (Ed.)
    • Gibson D.T., Subramanian V. Microbial degradation of aromatic hydrocarbons. Microbial Degradation of Organic Compounds 1984, 181-252. Marcel Dekker, Inc., New York. D.T. Gibson (Ed.).
    • (1984) Microbial Degradation of Organic Compounds , pp. 181-252
    • Gibson, D.T.1    Subramanian, V.2
  • 43
    • 0035997344 scopus 로고    scopus 로고
    • Error-prone repair DNA polymerases in prokaryotes and eukaryotes
    • Goodman M.F. Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu. Rev. Biochem. 2002, 71:17-50.
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 17-50
    • Goodman, M.F.1
  • 44
    • 0024451702 scopus 로고
    • Bacterial aromatic ring-cleavage enzymes are classified into two different gene families
    • Harayama S., Rekik M. Bacterial aromatic ring-cleavage enzymes are classified into two different gene families. J. Biol. Chem. 1989, 264:15328-15333.
    • (1989) J. Biol. Chem. , vol.264 , pp. 15328-15333
    • Harayama, S.1    Rekik, M.2
  • 45
    • 0026805891 scopus 로고
    • Functional and evolutionary relationships among diverse oxygenases
    • Harayama S., Kok M., Neidle E.L. Functional and evolutionary relationships among diverse oxygenases. Annu. Rev. Microbiol. 1992, 46:565-601.
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 565-601
    • Harayama, S.1    Kok, M.2    Neidle, E.L.3
  • 46
    • 0025056536 scopus 로고
    • DNA sequences of genes encoding Acinetobacter calcoaceticus protocatechuate 3,4-dioxygenase: Evidence indicating shuffling of genes and of DNA sequences within genes during their evolutionary divergence
    • Hartnett C., Neidle E.L., Ngai K.L., Ornston L.N. DNA sequences of genes encoding Acinetobacter calcoaceticus protocatechuate 3,4-dioxygenase: Evidence indicating shuffling of genes and of DNA sequences within genes during their evolutionary divergence. J. Bacteriol. 1990, 172:956-966.
    • (1990) J. Bacteriol. , vol.172 , pp. 956-966
    • Hartnett, C.1    Neidle, E.L.2    Ngai, K.L.3    Ornston, L.N.4
  • 47
    • 0029795374 scopus 로고    scopus 로고
    • The beta-ketoadipate pathway and the biology of self-identity
    • Harwood C.S., Parales R.E. The beta-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 1996, 50:553-590.
    • (1996) Annu. Rev. Microbiol. , vol.50 , pp. 553-590
    • Harwood, C.S.1    Parales, R.E.2
  • 49
    • 0030977550 scopus 로고    scopus 로고
    • Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site
    • Herrick J.B., Stuart-Keil K.G., Ghiorse W.C., Madsen E.L. Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site. Appl. Environ. Microbiol. 1997, 63:2330-2337.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2330-2337
    • Herrick, J.B.1    Stuart-Keil, K.G.2    Ghiorse, W.C.3    Madsen, E.L.4
  • 50
    • 0028944326 scopus 로고
    • Localization and organization of phenol degradation genes of Pseudomonas putida strain H
    • Herrmann H., Muller C., Schmidt I., Mahnke J., Petruschka L., Hahnke K. Localization and organization of phenol degradation genes of Pseudomonas putida strain H. Mol. Gen. Genet. 1995, 247:240-246.
    • (1995) Mol. Gen. Genet. , vol.247 , pp. 240-246
    • Herrmann, H.1    Muller, C.2    Schmidt, I.3    Mahnke, J.4    Petruschka, L.5    Hahnke, K.6
  • 51
    • 0028287911 scopus 로고
    • The biphenyl polychlorinated biphenyl-degradation locus (Bph) of Pseudomonas sp. LB400 encodes 4 additional metabolic enzymes
    • Hofer B., Backhaus S., Timmis K.N. The biphenyl polychlorinated biphenyl-degradation locus (Bph) of Pseudomonas sp. LB400 encodes 4 additional metabolic enzymes. Gene 1994, 144:9-16.
    • (1994) Gene , vol.144 , pp. 9-16
    • Hofer, B.1    Backhaus, S.2    Timmis, K.N.3
  • 52
    • 0014860437 scopus 로고
    • Co-metabolism of methyl- and chloro-substituted catechols by an Achromobacter sp. possessing a new meta-cleaving oxygenase
    • Horvath R.S. Co-metabolism of methyl- and chloro-substituted catechols by an Achromobacter sp. possessing a new meta-cleaving oxygenase. Biochem. J. 1970, 119:871-876.
    • (1970) Biochem. J. , vol.119 , pp. 871-876
    • Horvath, R.S.1
  • 53
    • 0032924503 scopus 로고    scopus 로고
    • Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls
    • Hrywna Y., Tsoi T.V., Maltseva O.V., Quensen J.F., Tiedje J.M. Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls. Appl. Environ. Microbiol. 1999, 65:2163-2169.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2163-2169
    • Hrywna, Y.1    Tsoi, T.V.2    Maltseva, O.V.3    Quensen, J.F.4    Tiedje, J.M.5
  • 54
    • 0032540352 scopus 로고    scopus 로고
    • A novel [2Fe-2S] ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase
    • Hugo N., Armengaud J., Gaillard J., Timmis K.N., Jouanneau Y. A novel [2Fe-2S] ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase. J. Biol. Chem. 1998, 273:9622-9629.
    • (1998) J. Biol. Chem. , vol.273 , pp. 9622-9629
    • Hugo, N.1    Armengaud, J.2    Gaillard, J.3    Timmis, K.N.4    Jouanneau, Y.5
  • 55
    • 0033797755 scopus 로고    scopus 로고
    • Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: Evidence for their involvement in catechol dioxygenase reactivation
    • Hugo N., Meyer C., Armengaud J., Gaillard J., Timmis K.N., Jouanneau Y. Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: Evidence for their involvement in catechol dioxygenase reactivation. J. Bacteriol. 2000, 182:5580-5585.
    • (2000) J. Bacteriol. , vol.182 , pp. 5580-5585
    • Hugo, N.1    Meyer, C.2    Armengaud, J.3    Gaillard, J.4    Timmis, K.N.5    Jouanneau, Y.6
  • 57
    • 0242608621 scopus 로고    scopus 로고
    • Pathways of oxidative damage
    • Imlay J.A. Pathways of oxidative damage. Annu. Rev. Microbiol. 2003, 57:395-418.
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 395-418
    • Imlay, J.A.1
  • 58
    • 0033986392 scopus 로고    scopus 로고
    • HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1
    • Jaspers M.C., Suske W.A., Schmid A., Goslings D.A., Kohler H.P., van der Meer J.R. HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1. J. Bacteriol. 2000, 182:405-417.
    • (2000) J. Bacteriol. , vol.182 , pp. 405-417
    • Jaspers, M.C.1    Suske, W.A.2    Schmid, A.3    Goslings, D.A.4    Kohler, H.P.5    van der Meer, J.R.6
  • 59
    • 77952926530 scopus 로고    scopus 로고
    • Nitroaromatic compounds, from synthesis to biodegradation
    • Ju K.S., Parales R.E. Nitroaromatic compounds, from synthesis to biodegradation. Microbiol. Mol. Biol. Rev. 2009, 74:250-272.
    • (2009) Microbiol. Mol. Biol. Rev. , vol.74 , pp. 250-272
    • Ju, K.S.1    Parales, R.E.2
  • 61
    • 0031684504 scopus 로고    scopus 로고
    • Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida
    • Kallastu A., Horak R., Kivisaar M. Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida. J. Bacteriol. 1998, 180:5306-5312.
    • (1998) J. Bacteriol. , vol.180 , pp. 5306-5312
    • Kallastu, A.1    Horak, R.2    Kivisaar, M.3
  • 62
    • 33845592553 scopus 로고    scopus 로고
    • Characterization of naphthalene-degrading Pseudomonas species isolated from pollutant-contaminated sites: Oxidative stress during their growth on naphthalene
    • Kang Y.S., Kim Y.J., Jeon C.O., Park W. Characterization of naphthalene-degrading Pseudomonas species isolated from pollutant-contaminated sites: Oxidative stress during their growth on naphthalene. J. Microbiol. Biotechnol. 2006, 16:1819-1825.
    • (2006) J. Microbiol. Biotechnol. , vol.16 , pp. 1819-1825
    • Kang, Y.S.1    Kim, Y.J.2    Jeon, C.O.3    Park, W.4
  • 63
    • 35448988447 scopus 로고    scopus 로고
    • Overexpressing antioxidant enzymes enhances naphthalene biodegradation in Pseudomonas sp. strain As1
    • Kang Y.S., Lee Y., Jung H., Jeon C.O., Madsen E.L., Park W. Overexpressing antioxidant enzymes enhances naphthalene biodegradation in Pseudomonas sp. strain As1. Microbiology 2007, 153:3246-3254.
    • (2007) Microbiology , vol.153 , pp. 3246-3254
    • Kang, Y.S.1    Lee, Y.2    Jung, H.3    Jeon, C.O.4    Madsen, E.L.5    Park, W.6
  • 64
    • 0027138818 scopus 로고
    • Regulation of the catechol 1,2-dioxygenase- and phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85
    • Kasak L., Horak R., Nurk A., Talvik K., Kivisaar M. Regulation of the catechol 1,2-dioxygenase- and phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85. J. Bacteriol. 1993, 175:8038-8042.
    • (1993) J. Bacteriol. , vol.175 , pp. 8038-8042
    • Kasak, L.1    Horak, R.2    Nurk, A.3    Talvik, K.4    Kivisaar, M.5
  • 65
    • 0031006474 scopus 로고    scopus 로고
    • Promoter-creating mutations in Pseudomonas putida: A model system for the study of mutation in starving bacteria
    • Kasak L., Horak R., Kivisaar M. Promoter-creating mutations in Pseudomonas putida: A model system for the study of mutation in starving bacteria. Proc. Natl. Acad. Sci. USA 1997, 94:3134-3139.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 3134-3139
    • Kasak, L.1    Horak, R.2    Kivisaar, M.3
  • 68
    • 0033402149 scopus 로고    scopus 로고
    • Functional analysis of genes involved in biphenyl, naphthalene, phenanthrene, and m-xylene degradation by Sphingomonas yanoikuyae B1
    • Kim E., Zylstra G.J. Functional analysis of genes involved in biphenyl, naphthalene, phenanthrene, and m-xylene degradation by Sphingomonas yanoikuyae B1. J. Ind. Microbiol. Biotechnol. 1999, 23:294-302.
    • (1999) J. Ind. Microbiol. Biotechnol. , vol.23 , pp. 294-302
    • Kim, E.1    Zylstra, G.J.2
  • 69
    • 0030837179 scopus 로고    scopus 로고
    • Evidence for the role of 2-hydroxychromene-2-carboxylate isomerase in the degradation of anthracene by Sphingomonas yanoikuyae B1
    • Kim E., Zylstra G.J., Freeman J.P., Heinze T.M., Deck J., Cerniglia C.E. Evidence for the role of 2-hydroxychromene-2-carboxylate isomerase in the degradation of anthracene by Sphingomonas yanoikuyae B1. FEMS Microbiol. Lett. 1997, 153:479-484.
    • (1997) FEMS Microbiol. Lett. , vol.153 , pp. 479-484
    • Kim, E.1    Zylstra, G.J.2    Freeman, J.P.3    Heinze, T.M.4    Deck, J.5    Cerniglia, C.E.6
  • 70
    • 0019457548 scopus 로고
    • Inhibition of catechol 2,3-dioxygenase from Pseudomonas putida by 3-chlorocatechol
    • Klecka G.M., Gibson D.T. Inhibition of catechol 2,3-dioxygenase from Pseudomonas putida by 3-chlorocatechol. Appl. Environ. Microbiol. 1981, 41:1159-1165.
    • (1981) Appl. Environ. Microbiol. , vol.41 , pp. 1159-1165
    • Klecka, G.M.1    Gibson, D.T.2
  • 71
    • 0030986090 scopus 로고    scopus 로고
    • Biodegradation of 2,4-dichlorophenol through a distal meta-fission pathway
    • Koh S., McCullar M.V., Focht D.D. Biodegradation of 2,4-dichlorophenol through a distal meta-fission pathway. Appl. Environ. Microbiol. 1997, 63:2054-2057.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2054-2057
    • Koh, S.1    McCullar, M.V.2    Focht, D.D.3
  • 72
    • 0024119620 scopus 로고
    • Degradation of 2-hydroxybiphenyl and 2,2'-dihydroxybiphenyl by Pseudomonas sp. strain HBP1
    • Kohler H.P., Kohler-Staub D., Focht D.D. Degradation of 2-hydroxybiphenyl and 2,2'-dihydroxybiphenyl by Pseudomonas sp. strain HBP1. Appl. Environ. Microbiol. 1988, 54:2683-2688.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 2683-2688
    • Kohler, H.P.1    Kohler-Staub, D.2    Focht, D.D.3
  • 73
    • 0027418864 scopus 로고
    • Selection of Pseudomonas sp. strain HBP1 Prp for metabolism of 2-propylphenol and elucidation of the degradative pathway
    • Kohler H.P., van der Maarel M.J., Kohler-Staub D. Selection of Pseudomonas sp. strain HBP1 Prp for metabolism of 2-propylphenol and elucidation of the degradative pathway. Appl. Environ. Microbiol. 1993, 59:860-866.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 860-866
    • Kohler, H.P.1    van der Maarel, M.J.2    Kohler-Staub, D.3
  • 74
    • 0031874757 scopus 로고    scopus 로고
    • Enhanced degradation of polychlorinated biphenyls by directed evolution of biphenyl dioxygenase
    • Kumamaru T., Suenaga H., Mitsuoka M., Watanabe T., Furukawa K. Enhanced degradation of polychlorinated biphenyls by directed evolution of biphenyl dioxygenase. Nat. Biotechnol. 1998, 16:663-666.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 663-666
    • Kumamaru, T.1    Suenaga, H.2    Mitsuoka, M.3    Watanabe, T.4    Furukawa, K.5
  • 75
    • 2342419732 scopus 로고    scopus 로고
    • DNA replication fidelity
    • Kunkel T.A. DNA replication fidelity. J. Biol. Chem. 2004, 279:16895-16898.
    • (2004) J. Biol. Chem. , vol.279 , pp. 16895-16898
    • Kunkel, T.A.1
  • 76
    • 33744460220 scopus 로고    scopus 로고
    • The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins
    • Lacal J., Busch A., Guazzaroni M.E., Krell T., Ramos J.L. The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins. Proc. Natl. Acad. Sci. USA 2006, 103:8191-8196.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 8191-8196
    • Lacal, J.1    Busch, A.2    Guazzaroni, M.E.3    Krell, T.4    Ramos, J.L.5
  • 77
    • 38349194474 scopus 로고    scopus 로고
    • Hierarchical binding of the TodT response regulator to its multiple recognition sites at the tod pathway operon promoter
    • Lacal J., Guazzaroni M.E., Busch A., Krell T., Ramos J.L. Hierarchical binding of the TodT response regulator to its multiple recognition sites at the tod pathway operon promoter. J. Mol. Biol. 2008, 376:325-337.
    • (2008) J. Mol. Biol. , vol.376 , pp. 325-337
    • Lacal, J.1    Guazzaroni, M.E.2    Busch, A.3    Krell, T.4    Ramos, J.L.5
  • 78
    • 0033912879 scopus 로고    scopus 로고
    • Characterization of a second tfd gene cluster for chlorophenol and chlorocatechol metabolism on plasmid pJP4 in Ralstonia eutropha JMP134(pJP4)
    • Laemmli C.M., Leveau J.H.J., Zehnder A.J.B., van der Meer J.R. Characterization of a second tfd gene cluster for chlorophenol and chlorocatechol metabolism on plasmid pJP4 in Ralstonia eutropha JMP134(pJP4). J. Bacteriol. 2000, 182:4165-4172.
    • (2000) J. Bacteriol. , vol.182 , pp. 4165-4172
    • Laemmli, C.M.1    Leveau, J.H.J.2    Zehnder, A.J.B.3    van der Meer, J.R.4
  • 80
    • 0028434213 scopus 로고
    • Metabolic engineering of Pseudomonas putida for the simultaneous biodegradation of benzene, toluene, and p-xylene mixture
    • Lee J.Y., Roh J.R., Kim H.S. Metabolic engineering of Pseudomonas putida for the simultaneous biodegradation of benzene, toluene, and p-xylene mixture. Biotechnol. Bioeng. 1994, 43:1146-1152.
    • (1994) Biotechnol. Bioeng. , vol.43 , pp. 1146-1152
    • Lee, J.Y.1    Roh, J.R.2    Kim, H.S.3
  • 81
    • 0029045958 scopus 로고
    • Combination of the tod and the tol pathways in redesigning a metabolic route of Pseudomonas putida for the mineralization of a benzene, toluene, and p-xylene mixture
    • Lee J.Y., Jung K.H., Choi S.H., Kim H.S. Combination of the tod and the tol pathways in redesigning a metabolic route of Pseudomonas putida for the mineralization of a benzene, toluene, and p-xylene mixture. Appl. Environ. Microbiol. 1995, 61:2211-2217.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2211-2217
    • Lee, J.Y.1    Jung, K.H.2    Choi, S.H.3    Kim, H.S.4
  • 82
    • 33745795591 scopus 로고    scopus 로고
    • Identification and expression of the cym, cmt, and tod catabolic genes from Pseudomonas putida KL47: Expression of the regulatory todST genes as a factor for catabolic adaptation
    • Lee K., Ryu E.K., Choi K.S., Cho M.C., Jeong J.J., Choi E.N., Lee S.O., Yoon D.Y., Hwang I., Kim C.K. Identification and expression of the cym, cmt, and tod catabolic genes from Pseudomonas putida KL47: Expression of the regulatory todST genes as a factor for catabolic adaptation. J. Microbiol. 2006, 44:192-199.
    • (2006) J. Microbiol. , vol.44 , pp. 192-199
    • Lee, K.1    Ryu, E.K.2    Choi, K.S.3    Cho, M.C.4    Jeong, J.J.5    Choi, E.N.6    Lee, S.O.7    Yoon, D.Y.8    Hwang, I.9    Kim, C.K.10
  • 84
    • 0026743341 scopus 로고
    • The electron-transport proteins of hydroxylating bacterial dioxygenases
    • Mason J.R., Cammack R. The electron-transport proteins of hydroxylating bacterial dioxygenases. Annu. Rev. Microbiol. 1992, 46:277-305.
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 277-305
    • Mason, J.R.1    Cammack, R.2
  • 85
    • 0031018281 scopus 로고    scopus 로고
    • Organisation of the bph gene cluster of transposon Tn4371, encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl compounds
    • Merlin C., Springael D., Mergeay M., Toussaint A. Organisation of the bph gene cluster of transposon Tn4371, encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl compounds. Mol. Gen. Genet. 1997, 253:499-506.
    • (1997) Mol. Gen. Genet. , vol.253 , pp. 499-506
    • Merlin, C.1    Springael, D.2    Mergeay, M.3    Toussaint, A.4
  • 86
    • 0032905533 scopus 로고    scopus 로고
    • Tn4371: A modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4/Ti-like transfer functions
    • Merlin C., Springael D., Toussaint A. Tn4371: A modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4/Ti-like transfer functions. Plasmid 1999, 41:40-54.
    • (1999) Plasmid , vol.41 , pp. 40-54
    • Merlin, C.1    Springael, D.2    Toussaint, A.3
  • 87
    • 0019774547 scopus 로고
    • Excision of the 40kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats
    • Meulien P., Downing R.G., Broda P. Excision of the 40kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats. Mol. Gen. Genet. 1981, 184:97-101.
    • (1981) Mol. Gen. Genet. , vol.184 , pp. 97-101
    • Meulien, P.1    Downing, R.G.2    Broda, P.3
  • 88
    • 24144450920 scopus 로고    scopus 로고
    • Milennium Assessment, Island Press, Washington, DC
    • Ecosystems and Human Well-Being: Synthesis 2005, Milennium Assessment, Island Press, Washington, DC.
    • (2005) Ecosystems and Human Well-Being: Synthesis
  • 90
    • 0037345571 scopus 로고    scopus 로고
    • Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia
    • Muller T.A., Werlen C., Spain J., van der Meer J.R. Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia. Environ. Microbiol. 2003, 5:163-173.
    • (2003) Environ. Microbiol. , vol.5 , pp. 163-173
    • Muller, T.A.1    Werlen, C.2    Spain, J.3    van der Meer, J.R.4
  • 91
    • 0036202173 scopus 로고    scopus 로고
    • Dispersal of plasmid pJP4 in unsaturated and saturated 2,4-dichlorophenoxyacetic acid contaminated soil
    • Newby D.T., Pepper I.L. Dispersal of plasmid pJP4 in unsaturated and saturated 2,4-dichlorophenoxyacetic acid contaminated soil. FEMS Microbiol. Ecol. 2002, 39:157-164.
    • (2002) FEMS Microbiol. Ecol. , vol.39 , pp. 157-164
    • Newby, D.T.1    Pepper, I.L.2
  • 92
    • 0033855541 scopus 로고    scopus 로고
    • Comparison of 2,4-dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors
    • Newby D.T., Gentry T.J., Pepper I.L. Comparison of 2,4-dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors. Appl. Environ. Microbiol. 2000, 66:3399-3407.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3399-3407
    • Newby, D.T.1    Gentry, T.J.2    Pepper, I.L.3
  • 93
    • 0033989202 scopus 로고    scopus 로고
    • Detection and characterization of plasmid pJP4 transfer to indigenous soil bacteria
    • Newby D.T., Josephson K.L., Pepper I.L. Detection and characterization of plasmid pJP4 transfer to indigenous soil bacteria. Appl. Environ. Microbiol. 2000, 66:290-296.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 290-296
    • Newby, D.T.1    Josephson, K.L.2    Pepper, I.L.3
  • 94
    • 0034019603 scopus 로고    scopus 로고
    • A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715
    • Nishi A., Tominaga K., Furukawa K. A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715. J. Bacteriol. 2000, 182:1949-1955.
    • (2000) J. Bacteriol. , vol.182 , pp. 1949-1955
    • Nishi, A.1    Tominaga, K.2    Furukawa, K.3
  • 95
    • 33750344433 scopus 로고    scopus 로고
    • Environmental stress and lesion-bypass DNA polymerases
    • Nohmi T. Environmental stress and lesion-bypass DNA polymerases. Annu. Rev. Microbiol. 2006, 60:231-253.
    • (2006) Annu. Rev. Microbiol. , vol.60 , pp. 231-253
    • Nohmi, T.1
  • 96
    • 0027287703 scopus 로고
    • In-vivo-generated fusion promoters in Pseudomonas putida
    • Nurk A., Tamm A., Horak R., Kivisaar M. In-vivo-generated fusion promoters in Pseudomonas putida. Gene 1993, 127:23-29.
    • (1993) Gene , vol.127 , pp. 23-29
    • Nurk, A.1    Tamm, A.2    Horak, R.3    Kivisaar, M.4
  • 97
    • 0035151436 scopus 로고    scopus 로고
    • Pseudomonas putida CE2010 can degrade biphenyl by a mosaic pathway encoded by the tod operon and cmtE, which are identical to those of P. putida F1 except for a single base difference in the operator-promoter region of the cmt operon
    • Ohta Y., Maeda M., Kudo T. Pseudomonas putida CE2010 can degrade biphenyl by a mosaic pathway encoded by the tod operon and cmtE, which are identical to those of P. putida F1 except for a single base difference in the operator-promoter region of the cmt operon. Microbiology 2001, 147:31-41.
    • (2001) Microbiology , vol.147 , pp. 31-41
    • Ohta, Y.1    Maeda, M.2    Kudo, T.3
  • 98
    • 0031454105 scopus 로고    scopus 로고
    • Cloning and sequence analysis of a catechol 2,3-dioxygenase gene from the nitrobenzene-degrading strain Comamonas sp. JS765
    • Parales R.E., Ontl T.A., Gibson D.T. Cloning and sequence analysis of a catechol 2,3-dioxygenase gene from the nitrobenzene-degrading strain Comamonas sp. JS765. J. Ind. Microbiol. Biotechnol. 1997, 19:385-391.
    • (1997) J. Ind. Microbiol. Biotechnol. , vol.19 , pp. 385-391
    • Parales, R.E.1    Ontl, T.A.2    Gibson, D.T.3
  • 99
    • 0031958521 scopus 로고    scopus 로고
    • Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems
    • Parales R.E., Emig M.D., Lynch N.A., Gibson D.T. Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems. J. Bacteriol. 1998, 180:2337-2344.
    • (1998) J. Bacteriol. , vol.180 , pp. 2337-2344
    • Parales, R.E.1    Emig, M.D.2    Lynch, N.A.3    Gibson, D.T.4
  • 100
    • 11244337594 scopus 로고    scopus 로고
    • Characterization in Pseudomonas putida Cg1 of nahR and its role in bacterial survival in soil
    • Park W., Madsen E.L. Characterization in Pseudomonas putida Cg1 of nahR and its role in bacterial survival in soil. Appl. Microbiol. Biotechnol. 2004, 66:209-216.
    • (2004) Appl. Microbiol. Biotechnol. , vol.66 , pp. 209-216
    • Park, W.1    Madsen, E.L.2
  • 101
    • 0036023038 scopus 로고    scopus 로고
    • Chloroplast-type ferredoxin involved in reactivation of catechol 2,3-dioxygenase from Pseudomonas sp. S 47
    • Park D.W., Chae J.C., Kim Y., Iida T., Kudo T., Kim C.K. Chloroplast-type ferredoxin involved in reactivation of catechol 2,3-dioxygenase from Pseudomonas sp. S 47. J. Biochem. Mol. Biol. 2002, 35:432-436.
    • (2002) J. Biochem. Mol. Biol. , vol.35 , pp. 432-436
    • Park, D.W.1    Chae, J.C.2    Kim, Y.3    Iida, T.4    Kudo, T.5    Kim, C.K.6
  • 102
    • 2442593799 scopus 로고    scopus 로고
    • Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: Toxicity of naphthalene and its metabolites
    • Park W., Jeon C.O., Cadillo H., DeRito C., Madsen E.L. Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: Toxicity of naphthalene and its metabolites. Appl. Microbiol. Biotechnol. 2004, 64:429-435.
    • (2004) Appl. Microbiol. Biotechnol. , vol.64 , pp. 429-435
    • Park, W.1    Jeon, C.O.2    Cadillo, H.3    DeRito, C.4    Madsen, E.L.5
  • 103
    • 0027938931 scopus 로고
    • An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols
    • Pavel H., Forsman M., Shingler V. An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols. J. Bacteriol. 1994, 176:7550-7557.
    • (1994) J. Bacteriol. , vol.176 , pp. 7550-7557
    • Pavel, H.1    Forsman, M.2    Shingler, V.3
  • 104
    • 0037371162 scopus 로고    scopus 로고
    • Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134(pJP4) in 3-chlorobenzoic acid
    • Perez-Pantoja D., Ledger T., Pieper D.H., Gonzalez B. Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134(pJP4) in 3-chlorobenzoic acid. J. Bacteriol. 2003, 185:1534-1542.
    • (2003) J. Bacteriol. , vol.185 , pp. 1534-1542
    • Perez-Pantoja, D.1    Ledger, T.2    Pieper, D.H.3    Gonzalez, B.4
  • 105
    • 0030780752 scopus 로고    scopus 로고
    • Acquisition of a deliberately introduced phenol degradation operon, pheBA, by different indigenous Pseudomonas species
    • Peters M., Heinaru E., Talpsep E., Wand H., Stottmeister U., Heinaru A., Nurk A. Acquisition of a deliberately introduced phenol degradation operon, pheBA, by different indigenous Pseudomonas species. Appl. Environ. Microbiol. 1997, 63:4899-4906.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4899-4906
    • Peters, M.1    Heinaru, E.2    Talpsep, E.3    Wand, H.4    Stottmeister, U.5    Heinaru, A.6    Nurk, A.7
  • 106
    • 0034075043 scopus 로고    scopus 로고
    • Engineering bacteria for bioremediation
    • Pieper D.H., Reineke W. Engineering bacteria for bioremediation. Curr. Opin. Biotechnol. 2000, 11:262-270.
    • (2000) Curr. Opin. Biotechnol. , vol.11 , pp. 262-270
    • Pieper, D.H.1    Reineke, W.2
  • 107
    • 0027308193 scopus 로고
    • In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin-A bacterial strategy to expand the substrate-specificity of aromatic degradative pathways
    • Polissi A., Harayama S. In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin-A bacterial strategy to expand the substrate-specificity of aromatic degradative pathways. EMBO J. 1993, 12:3339-3347.
    • (1993) EMBO J. , vol.12 , pp. 3339-3347
    • Polissi, A.1    Harayama, S.2
  • 108
    • 0028672047 scopus 로고
    • Genetics and biochemistry of phenol degradation by Pseudomonas sp. CF600
    • Powlowski J., Shingler V. Genetics and biochemistry of phenol degradation by Pseudomonas sp. CF600. Biodegradation 1994, 5:219-236.
    • (1994) Biodegradation , vol.5 , pp. 219-236
    • Powlowski, J.1    Shingler, V.2
  • 109
    • 35448975374 scopus 로고    scopus 로고
    • Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2
    • Pumphrey G.M., Madsen E.L. Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2. Microbiology 2007, 153:3730-3738.
    • (2007) Microbiology , vol.153 , pp. 3730-3738
    • Pumphrey, G.M.1    Madsen, E.L.2
  • 110
    • 0343419040 scopus 로고
    • Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria
    • Ramos J.L., Stolz A., Reineke W., Timmis K.N. Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria. Proc. Natl. Acad. Sci. USA 1986, 83:8467-8471.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 8467-8471
    • Ramos, J.L.1    Stolz, A.2    Reineke, W.3    Timmis, K.N.4
  • 111
    • 0023667753 scopus 로고
    • Redesigning metabolic routes: Manipulation of TOL plasmid pathway for catabolism of alkylbenzoates
    • Ramos J.L., Wasserfallen A., Rose K., Timmis K.N. Redesigning metabolic routes: Manipulation of TOL plasmid pathway for catabolism of alkylbenzoates. Science 1987, 235:593-596.
    • (1987) Science , vol.235 , pp. 593-596
    • Ramos, J.L.1    Wasserfallen, A.2    Rose, K.3    Timmis, K.N.4
  • 112
    • 0030860391 scopus 로고    scopus 로고
    • Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
    • Ramos J.L., Marques S., Timmis K.N. Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Annu. Rev. Microbiol. 1997, 51:341-373.
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 341-373
    • Ramos, J.L.1    Marques, S.2    Timmis, K.N.3
  • 114
    • 0031751325 scopus 로고    scopus 로고
    • Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13
    • Ravatn R., Studer S., Springael D., Zehnder A.J., van der Meer J.R. Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13. J. Bacteriol. 1998, 180:4360-4369.
    • (1998) J. Bacteriol. , vol.180 , pp. 4360-4369
    • Ravatn, R.1    Studer, S.2    Springael, D.3    Zehnder, A.J.4    van der Meer, J.R.5
  • 115
    • 0031756487 scopus 로고    scopus 로고
    • Development of hybrid strains for the mineralization of chloroaromatics by patchwork assembly
    • Reineke W. Development of hybrid strains for the mineralization of chloroaromatics by patchwork assembly. Annu. Rev. Microbiol. 1998, 52:287-331.
    • (1998) Annu. Rev. Microbiol. , vol.52 , pp. 287-331
    • Reineke, W.1
  • 116
    • 34248577225 scopus 로고    scopus 로고
    • The ttgGHI solvent efflux pump operon of Pseudomonas putida DOT-T1E is located on a large self-transmissible plasmid
    • Rodríguez-Herva J., Garcia V., Hurtado A., Seguar A., Ramos J.L. The ttgGHI solvent efflux pump operon of Pseudomonas putida DOT-T1E is located on a large self-transmissible plasmid. Environ. Microbiol. 2007, 9:1550-1561.
    • (2007) Environ. Microbiol. , vol.9 , pp. 1550-1561
    • Rodríguez-Herva, J.1    Garcia, V.2    Hurtado, A.3    Seguar, A.4    Ramos, J.L.5
  • 117
    • 0023644204 scopus 로고
    • Assemblage of ortho cleavage route for simultaneous degradation of chloro- and methylaromatics
    • Rojo F., Pieper D.H., Engesser K.H., Knackmuss H.J., Timmis K.N. Assemblage of ortho cleavage route for simultaneous degradation of chloro- and methylaromatics. Science 1987, 238:1395-1398.
    • (1987) Science , vol.238 , pp. 1395-1398
    • Rojo, F.1    Pieper, D.H.2    Engesser, K.H.3    Knackmuss, H.J.4    Timmis, K.N.5
  • 119
    • 0015521997 scopus 로고
    • The metabolic divergence in the meta cleavage of catechols by Pseudomonas putida NCIB 10015. Physiological significance and evolutionary implications
    • Sala-Trepat J.M., Murray K., Williams P.A. The metabolic divergence in the meta cleavage of catechols by Pseudomonas putida NCIB 10015. Physiological significance and evolutionary implications. Eur. J. Biochem. 1972, 28:347-356.
    • (1972) Eur. J. Biochem. , vol.28 , pp. 347-356
    • Sala-Trepat, J.M.1    Murray, K.2    Williams, P.A.3
  • 120
    • 0036178355 scopus 로고    scopus 로고
    • Occurrence and properties of glutathione S-transferases in phenol-degrading Pseudomonas strains
    • Santos P.M., Mignogna G., Heipieper H.J., Zennaro E. Occurrence and properties of glutathione S-transferases in phenol-degrading Pseudomonas strains. Res. Microbiol. 2002, 153:89-98.
    • (2002) Res. Microbiol. , vol.153 , pp. 89-98
    • Santos, P.M.1    Mignogna, G.2    Heipieper, H.J.3    Zennaro, E.4
  • 121
    • 4444316792 scopus 로고    scopus 로고
    • Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics
    • Santos P.M., Benndorf D., Sa-Correia I. Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics. Proteomics 2004, 4:2640-2652.
    • (2004) Proteomics , vol.4 , pp. 2640-2652
    • Santos, P.M.1    Benndorf, D.2    Sa-Correia, I.3
  • 122
    • 0035143589 scopus 로고    scopus 로고
    • Acute toxicity of (chloro-)catechols and (chloro-)catechol-copper combinations in Escherichia coli corresponds to their membrane toxicity in vitro
    • Schweigert N., Hunziker R.W., Escher B.I., Eggen R.I.L. Acute toxicity of (chloro-)catechols and (chloro-)catechol-copper combinations in Escherichia coli corresponds to their membrane toxicity in vitro. Environ. Toxicol. Chem. 2001, 20:239-247.
    • (2001) Environ. Toxicol. Chem. , vol.20 , pp. 239-247
    • Schweigert, N.1    Hunziker, R.W.2    Escher, B.I.3    Eggen, R.I.L.4
  • 123
    • 0035211211 scopus 로고    scopus 로고
    • Chemical properties of catechols and their molecular modes of toxic action in cells, from microorganisms to mammals
    • Schweigert N., Zehnder A.J.B., Eggen R.I.L. Chemical properties of catechols and their molecular modes of toxic action in cells, from microorganisms to mammals. Environ. Microbiol. 2001, 3:81-91.
    • (2001) Environ. Microbiol. , vol.3 , pp. 81-91
    • Schweigert, N.1    Zehnder, A.J.B.2    Eggen, R.I.L.3
  • 124
    • 0344475305 scopus 로고    scopus 로고
    • Integrated regulation in response to aromatic compounds: From signal sensing to attractive behaviour
    • Shingler V. Integrated regulation in response to aromatic compounds: From signal sensing to attractive behaviour. Environ. Microbiol. 2003, 5:1226-1241.
    • (2003) Environ. Microbiol. , vol.5 , pp. 1226-1241
    • Shingler, V.1
  • 125
    • 0029132191 scopus 로고
    • Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds
    • Shingler V., Pavel H. Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds. Mol. Microbiol. 1995, 17:505-513.
    • (1995) Mol. Microbiol. , vol.17 , pp. 505-513
    • Shingler, V.1    Pavel, H.2
  • 127
    • 0022886431 scopus 로고
    • Chromosomal location of TOL plasmid DNA in Pseudomonas putida
    • Sinclair M.I., Maxwell P.C., Lyon B.R., Holloway B.W. Chromosomal location of TOL plasmid DNA in Pseudomonas putida. J. Bacteriol. 1986, 168:1302-1308.
    • (1986) J. Bacteriol. , vol.168 , pp. 1302-1308
    • Sinclair, M.I.1    Maxwell, P.C.2    Lyon, B.R.3    Holloway, B.W.4
  • 128
    • 0842303297 scopus 로고    scopus 로고
    • Horizontal gene transfer and microbial adaptation to xenobiotics: New types of mobile genetic elements and lessons from ecological studies
    • Springael D., Top E.M. Horizontal gene transfer and microbial adaptation to xenobiotics: New types of mobile genetic elements and lessons from ecological studies. Trends Microbiol. 2004, 12:53-58.
    • (2004) Trends Microbiol. , vol.12 , pp. 53-58
    • Springael, D.1    Top, E.M.2
  • 129
    • 0035166827 scopus 로고    scopus 로고
    • Occurrence of Tn4371-related mobile elements and sequences in (chloro)biphenyl-degrading bacteria
    • Springael D., Ryngaert A., Merlin C., Toussaint A., Mergeay M. Occurrence of Tn4371-related mobile elements and sequences in (chloro)biphenyl-degrading bacteria. Appl. Environ. Microbiol. 2001, 67:42-50.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 42-50
    • Springael, D.1    Ryngaert, A.2    Merlin, C.3    Toussaint, A.4    Mergeay, M.5
  • 130
    • 0034878844 scopus 로고    scopus 로고
    • Directed evolution of biphenyl dioxygenase: Emergence of enhanced degradation capacity for benzene, toluene, and alkylbenzenes
    • Suenaga H., Mitsuoka M., Ura Y., Watanabe T., Furukawa K. Directed evolution of biphenyl dioxygenase: Emergence of enhanced degradation capacity for benzene, toluene, and alkylbenzenes. J. Bacteriol. 2001, 183:5441-5444.
    • (2001) J. Bacteriol. , vol.183 , pp. 5441-5444
    • Suenaga, H.1    Mitsuoka, M.2    Ura, Y.3    Watanabe, T.4    Furukawa, K.5
  • 131
    • 1942475764 scopus 로고    scopus 로고
    • Involvement of error-prone DNA polymerase IV in stationary-phase mutagenesis in Pseudomonas putida
    • Tegova R., Tover A., Tarassova K., Tark M., Kivisaar M. Involvement of error-prone DNA polymerase IV in stationary-phase mutagenesis in Pseudomonas putida. J. Bacteriol. 2004, 186:2735-2744.
    • (2004) J. Bacteriol. , vol.186 , pp. 2735-2744
    • Tegova, R.1    Tover, A.2    Tarassova, K.3    Tark, M.4    Kivisaar, M.5
  • 132
    • 0003681308 scopus 로고    scopus 로고
    • Tesoro Petroleum Companies, Inc., Accessed February 25, 2011
    • Material safety data sheet: gasoline 2003, Tesoro Petroleum Companies, Inc., Accessed February 25, 2011. http://firstfuelbank.com/msds/Tesoro.pdf.
    • (2003) Material safety data sheet: gasoline
  • 133
  • 134
    • 0032795933 scopus 로고    scopus 로고
    • Bacteria designed for bioremediation
    • Timmis K.N., Pieper D.H. Bacteria designed for bioremediation. Trends Biotechnol. 1999, 17:201-204.
    • (1999) Trends Biotechnol. , vol.17 , pp. 201-204
    • Timmis, K.N.1    Pieper, D.H.2
  • 135
    • 0038820052 scopus 로고    scopus 로고
    • The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds
    • Top E.M., Springael D. The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr. Opin. Biotechnol. 2003, 14:262-269.
    • (2003) Curr. Opin. Biotechnol. , vol.14 , pp. 262-269
    • Top, E.M.1    Springael, D.2
  • 136
    • 0036848574 scopus 로고    scopus 로고
    • Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters
    • Top E.M., Springael D., Boon N. Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters. FEMS Microbiol. Ecol. 2002, 42:199-208.
    • (2002) FEMS Microbiol. Ecol. , vol.42 , pp. 199-208
    • Top, E.M.1    Springael, D.2    Boon, N.3
  • 137
    • 3042826882 scopus 로고    scopus 로고
    • Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways
    • Trefault N., De la Iglesia R., Molina A.M., Manzano M., Ledger T., Perez-Pantoja D., Sanchez M.A., Stuardo M., Gonzalez B. Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways. Environ. Microbiol. 2004, 6:655-668.
    • (2004) Environ. Microbiol. , vol.6 , pp. 655-668
    • Trefault, N.1    De la Iglesia, R.2    Molina, A.M.3    Manzano, M.4    Ledger, T.5    Perez-Pantoja, D.6    Sanchez, M.A.7    Stuardo, M.8    Gonzalez, B.9
  • 138
    • 4544275675 scopus 로고    scopus 로고
    • Bacterial transcriptional regulators for degradation pathways of aromatic compounds
    • Tropel D., van der Meer J.R. Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiol. Mol. Biol. Rev. 2004, 68:474-486.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 474-486
    • Tropel, D.1    van der Meer, J.R.2
  • 139
    • 0036118468 scopus 로고    scopus 로고
    • Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31
    • Tropel D., Meyer C., Armengaud J., Jouanneau Y. Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31. Arch. Microbiol. 2002, 177:345-351.
    • (2002) Arch. Microbiol. , vol.177 , pp. 345-351
    • Tropel, D.1    Meyer, C.2    Armengaud, J.3    Jouanneau, Y.4
  • 141
    • 33750009593 scopus 로고    scopus 로고
    • Use of genetically engineered microorganisms (GEMs) for the bioremediation of contaminants
    • Urgun-Demirtas M., Stark B., Pagilla K. Use of genetically engineered microorganisms (GEMs) for the bioremediation of contaminants. Crit. Rev. Biotechnol. 2006, 26:145-164.
    • (2006) Crit. Rev. Biotechnol. , vol.26 , pp. 145-164
    • Urgun-Demirtas, M.1    Stark, B.2    Pagilla, K.3
  • 142
    • 0037127253 scopus 로고    scopus 로고
    • The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates
    • Vaillancourt F.H., Labbe G., Drouin N.M., Fortin P.D., Eltis L.D. The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates. J. Biol. Chem. 2002, 277:2019-2027.
    • (2002) J. Biol. Chem. , vol.277 , pp. 2019-2027
    • Vaillancourt, F.H.1    Labbe, G.2    Drouin, N.M.3    Fortin, P.D.4    Eltis, L.D.5
  • 145
    • 0038534159 scopus 로고    scopus 로고
    • Evolution of metabolic pathways for degradation of environmental pollutants
    • John Wiley & Sons, New York, G. Bitton (Ed.)
    • van der Meer J.R. Evolution of metabolic pathways for degradation of environmental pollutants. Encyclopedia of Environmental Microbiology 2002, 1194-1207. John Wiley & Sons, New York. G. Bitton (Ed.).
    • (2002) Encyclopedia of Environmental Microbiology , pp. 1194-1207
    • van der Meer, J.R.1
  • 146
    • 32444440701 scopus 로고    scopus 로고
    • Environmental pollution promotes selection of microbial degradation pathways
    • van der Meer J.R. Environmental pollution promotes selection of microbial degradation pathways. Front. Ecol. Environ. 2006, 4:35-42.
    • (2006) Front. Ecol. Environ. , vol.4 , pp. 35-42
    • van der Meer, J.R.1
  • 147
    • 0038504021 scopus 로고    scopus 로고
    • Genomic islands and the evolution of catabolic pathways in bacteria
    • van der Meer J.R., Sentchilo V. Genomic islands and the evolution of catabolic pathways in bacteria. Curr. Opin. Biotechnol. 2003, 14:248-254.
    • (2003) Curr. Opin. Biotechnol. , vol.14 , pp. 248-254
    • van der Meer, J.R.1    Sentchilo, V.2
  • 148
    • 0023637527 scopus 로고
    • Degradation of low concentrations of dichlorobenzenes and 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 in nonsterile soil columns
    • van der Meer J.R., Roelofsen W., Schraa G., Zehnder A.J.B. Degradation of low concentrations of dichlorobenzenes and 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 in nonsterile soil columns. FEMS Microbiol. Lett. 1987, 45:333-341.
    • (1987) FEMS Microbiol. Lett. , vol.45 , pp. 333-341
    • van der Meer, J.R.1    Roelofsen, W.2    Schraa, G.3    Zehnder, A.J.B.4
  • 149
    • 0025719238 scopus 로고
    • Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51
    • van der Meer J.R., Zehnder A.J., de Vos W.M. Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51. J. Bacteriol. 1991, 173:7077-7083.
    • (1991) J. Bacteriol. , vol.173 , pp. 7077-7083
    • van der Meer, J.R.1    Zehnder, A.J.2    de Vos, W.M.3
  • 151
    • 0031765099 scopus 로고    scopus 로고
    • Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater
    • van der Meer J.R., Werlen C., Nishino S.F., Spain J.C. Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater. Appl. Environ. Microbiol. 1998, 64:4185-4193.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4185-4193
    • van der Meer, J.R.1    Werlen, C.2    Nishino, S.F.3    Spain, J.C.4
  • 152
    • 0035096460 scopus 로고    scopus 로고
    • The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases
    • van der Meer J.R., Ravatn R., Sentchilo V. The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases. Arch. Microbiol. 2001, 175:79-85.
    • (2001) Arch. Microbiol. , vol.175 , pp. 79-85
    • van der Meer, J.R.1    Ravatn, R.2    Sentchilo, V.3
  • 153
    • 4544356433 scopus 로고    scopus 로고
    • Biocatalytic synthesis of polycatechols from toxic aromatic compounds
    • Ward G., Parales R.E., Dosoretz C.G. Biocatalytic synthesis of polycatechols from toxic aromatic compounds. Environ. Sci. Technol. 2004, 38:4753-4757.
    • (2004) Environ. Sci. Technol. , vol.38 , pp. 4753-4757
    • Ward, G.1    Parales, R.E.2    Dosoretz, C.G.3
  • 154
    • 0029920974 scopus 로고    scopus 로고
    • The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradation
    • Werlen C., Kohler H.P.E., van derMeer J.R. The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradation. J. Biol. Chem. 1996, 271:4009-4016.
    • (1996) J. Biol. Chem. , vol.271 , pp. 4009-4016
    • Werlen, C.1    Kohler, H.P.E.2    van derMeer, J.R.3
  • 155
    • 0016593935 scopus 로고
    • Metabolism of toluene and xylenes by Pseudomonas putida mt-2: Evidence for a new function of the TOL plasmid
    • Worsey M.J., Williams P.A. Metabolism of toluene and xylenes by Pseudomonas putida mt-2: Evidence for a new function of the TOL plasmid. J. Bacteriol. 1975, 124:7-13.
    • (1975) J. Bacteriol. , vol.124 , pp. 7-13
    • Worsey, M.J.1    Williams, P.A.2
  • 156
    • 0034032750 scopus 로고    scopus 로고
    • A biochemical mechanism for nonrandom mutations and evolution
    • Wright B.E. A biochemical mechanism for nonrandom mutations and evolution. J. Bacteriol. 2000, 182:2993-3001.
    • (2000) J. Bacteriol. , vol.182 , pp. 2993-3001
    • Wright, B.E.1
  • 158
    • 0025371323 scopus 로고
    • Mutations leading to constitutive expression from the TOL plasmid meta-cleavage pathway operon are located at the C-terminal end of the positive regulator protein XylS
    • Zhou L.M., Timmis K.N., Ramos J.L. Mutations leading to constitutive expression from the TOL plasmid meta-cleavage pathway operon are located at the C-terminal end of the positive regulator protein XylS. J. Bacteriol 1990, 172:3707-3710.
    • (1990) J. Bacteriol , vol.172 , pp. 3707-3710
    • Zhou, L.M.1    Timmis, K.N.2    Ramos, J.L.3
  • 159
    • 0024427069 scopus 로고
    • Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli
    • Zylstra G.J., Gibson D.T. Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli. J. Biol. Chem. 1989, 264:14940-14946.
    • (1989) J. Biol. Chem. , vol.264 , pp. 14940-14946
    • Zylstra, G.J.1    Gibson, D.T.2
  • 160
    • 0024025415 scopus 로고
    • Toluene degradation by Pseudomonas putida F1: Genetic organization of the tod operon
    • Zylstra G.J., McCombie W.R., Gibson D.T., Finette B.A. Toluene degradation by Pseudomonas putida F1: Genetic organization of the tod operon. Appl. Environ. Microbiol. 1988, 54:1498-1503.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1498-1503
    • Zylstra, G.J.1    McCombie, W.R.2    Gibson, D.T.3    Finette, B.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.