-
1
-
-
0024357889
-
Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway
-
Abril M.A., Michan C., Timmis K.N., Ramos J.L. Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J. Bacteriol. 1989, 171:6782-6790.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 6782-6790
-
-
Abril, M.A.1
Michan, C.2
Timmis, K.N.3
Ramos, J.L.4
-
2
-
-
0003815886
-
-
Agency for Toxic Substances and Disease Registry (ATSDR), U.S. Department of Health and Human Services, Washington, DC
-
Toxicological Profile for Benzene 2007, Agency for Toxic Substances and Disease Registry (ATSDR), U.S. Department of Health and Human Services, Washington, DC.
-
(2007)
Toxicological Profile for Benzene
-
-
-
3
-
-
0032487127
-
Growth kinetics of Pseudomonas putida G7 on naphthalene and occurrence of naphthalene toxicity during nutrient deprivation
-
Ahn I.S., Ghiorse W.C., Lion L.W., Shuler M.L. Growth kinetics of Pseudomonas putida G7 on naphthalene and occurrence of naphthalene toxicity during nutrient deprivation. Biotechnol. Bioeng. 1998, 59:587-594.
-
(1998)
Biotechnol. Bioeng.
, vol.59
, pp. 587-594
-
-
Ahn, I.S.1
Ghiorse, W.C.2
Lion, L.W.3
Shuler, M.L.4
-
4
-
-
57649220855
-
Glutathione transferases in bacteria
-
Allocati N., Federici L., Masulli M., Di Ilio C. Glutathione transferases in bacteria. FEBS J. 2009, 276:58-75.
-
(2009)
FEBS J.
, vol.276
, pp. 58-75
-
-
Allocati, N.1
Federici, L.2
Masulli, M.3
Di Ilio, C.4
-
5
-
-
0032825377
-
Adaptation of Comamonas testosteroni TA441 to utilization of phenol by spontaneous mutation of the gene for a trans-acting factor
-
Arai H., Akahira S., Ohishi T., Kudo T. Adaptation of Comamonas testosteroni TA441 to utilization of phenol by spontaneous mutation of the gene for a trans-acting factor. Mol. Microbiol. 1999, 33:1132-1140.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 1132-1140
-
-
Arai, H.1
Akahira, S.2
Ohishi, T.3
Kudo, T.4
-
6
-
-
0032866061
-
Genetic organization and characteristics of the 3-(3-hydroxyphenyl)propionic acid degradation pathway of Comamonas testosteroni TA441
-
Arai H., Yamamoto T., Ohishi T., Shimizu T., Nakata T., Kudo T. Genetic organization and characteristics of the 3-(3-hydroxyphenyl)propionic acid degradation pathway of Comamonas testosteroni TA441. Microbiology 1999, 145(Pt. 10):2813-2820.
-
(1999)
Microbiology
, vol.145
, Issue.PART 10
, pp. 2813-2820
-
-
Arai, H.1
Yamamoto, T.2
Ohishi, T.3
Shimizu, T.4
Nakata, T.5
Kudo, T.6
-
7
-
-
0031859323
-
Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: Catabolic genes dispersed on the genome
-
Armengaud J., Happe B., Timmis K.N. Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: Catabolic genes dispersed on the genome. J. Bacteriol. 1998, 180:3954-3966.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 3954-3966
-
-
Armengaud, J.1
Happe, B.2
Timmis, K.N.3
-
8
-
-
0038455693
-
Implication of two glutathione S-transferases in the optimal metabolism of m-toluate by Sphingomonas yanoikuyae B1
-
Bae M., Sul W.J., Koh S.C., Lee J.H., Zylstra G.J., Kim Y.M., Kimr E. Implication of two glutathione S-transferases in the optimal metabolism of m-toluate by Sphingomonas yanoikuyae B1. Antonie Van Leeuwenhoek 2003, 84:25-30.
-
(2003)
Antonie Van Leeuwenhoek
, vol.84
, pp. 25-30
-
-
Bae, M.1
Sul, W.J.2
Koh, S.C.3
Lee, J.H.4
Zylstra, G.J.5
Kim, Y.M.6
Kimr, E.7
-
9
-
-
0021330498
-
Suicide inactivation of catechol 2,3-dioxygenase from Pseudomonas putida mt-2 by 3-halocatechols
-
Bartels I., Knackmuss H.J., Reineke W. Suicide inactivation of catechol 2,3-dioxygenase from Pseudomonas putida mt-2 by 3-halocatechols. Appl. Environ. Microbiol. 1984, 47:500-505.
-
(1984)
Appl. Environ. Microbiol.
, vol.47
, pp. 500-505
-
-
Bartels, I.1
Knackmuss, H.J.2
Reineke, W.3
-
10
-
-
0032849333
-
Occurrence and expression of glutathione-S-transferase-encoding bphK genes in Burkholderia sp. strain LB400 and other biphenyl-utilizing bacteria
-
Bartels F., Backhaus S., Moore E.R., Timmis K.N., Hofer B. Occurrence and expression of glutathione-S-transferase-encoding bphK genes in Burkholderia sp. strain LB400 and other biphenyl-utilizing bacteria. Microbiology 1999, 145(Pt. 10):2821-2834.
-
(1999)
Microbiology
, vol.145
, Issue.PART 10
, pp. 2821-2834
-
-
Bartels, F.1
Backhaus, S.2
Moore, E.R.3
Timmis, K.N.4
Hofer, B.5
-
11
-
-
0032898962
-
Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes
-
Beil S., Timmis K.N., Pieper D.H. Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes. J. Bacteriol. 1999, 181:341-346.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 341-346
-
-
Beil, S.1
Timmis, K.N.2
Pieper, D.H.3
-
12
-
-
0035902462
-
Stationary-phase mutation in the bacterial chromosome: Recombination protein and DNA polymerase IV dependence
-
Bull H.J., Lombardo M.J., Rosenberg S.M. Stationary-phase mutation in the bacterial chromosome: Recombination protein and DNA polymerase IV dependence. Proc. Natl. Acad. Sci. USA 2001, 98:8334-8341.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8334-8341
-
-
Bull, H.J.1
Lombardo, M.J.2
Rosenberg, S.M.3
-
13
-
-
35348842602
-
Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals
-
Busch A., Lacal J., Martos A., Ramos J.L., Krell T. Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals. Proc. Natl. Acad. Sci. USA 2007, 104:13774-13779.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 13774-13779
-
-
Busch, A.1
Lacal, J.2
Martos, A.3
Ramos, J.L.4
Krell, T.5
-
14
-
-
0031060718
-
Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases
-
Butler C.S., Mason J.R. Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases. Adv. Microb. Physiol. 1997, 38:47-84.
-
(1997)
Adv. Microb. Physiol.
, vol.38
, pp. 47-84
-
-
Butler, C.S.1
Mason, J.R.2
-
15
-
-
71349086975
-
Biodegradation of aromatic compounds: Current status and opportunities for biomolecular approaches
-
Cao B., Nagarajan K., Loh K.C. Biodegradation of aromatic compounds: Current status and opportunities for biomolecular approaches. Appl. Microbiol. Biotechnol. 2009, 85:207-228.
-
(2009)
Appl. Microbiol. Biotechnol.
, vol.85
, pp. 207-228
-
-
Cao, B.1
Nagarajan, K.2
Loh, K.C.3
-
16
-
-
0035863067
-
The black cat/white cat principle of signal integration in bacterial promoters
-
Cases I., de Lorenzo V. The black cat/white cat principle of signal integration in bacterial promoters. EMBO J. 2001, 20:1-11.
-
(2001)
EMBO J.
, vol.20
, pp. 1-11
-
-
Cases, I.1
de Lorenzo, V.2
-
17
-
-
0028033313
-
Substrate-specificity of catechol 2,3-dioxygenase encoded by TOL plasmid PWWO of Pseudomonas putida and its relationship to cell-growth
-
Cerdan P., Wasserfallen A., Rekik M., Timmis K.N., Harayama S. Substrate-specificity of catechol 2,3-dioxygenase encoded by TOL plasmid PWWO of Pseudomonas putida and its relationship to cell-growth. J. Bacteriol. 1994, 176:6074-6081.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 6074-6081
-
-
Cerdan, P.1
Wasserfallen, A.2
Rekik, M.3
Timmis, K.N.4
Harayama, S.5
-
18
-
-
33646477129
-
Adaptive responses and cellular behaviour of biphenyl-degrading bacteria toward polychlorinated biphenyls
-
Chavez F.P., Gordillo F., Jerez C.A. Adaptive responses and cellular behaviour of biphenyl-degrading bacteria toward polychlorinated biphenyls. Biotechnol. Adv. 2006, 24:309-320.
-
(2006)
Biotechnol. Adv.
, vol.24
, pp. 309-320
-
-
Chavez, F.P.1
Gordillo, F.2
Jerez, C.A.3
-
19
-
-
0037352256
-
Expansion of growth substrate range in Pseudomonas putida F1 by mutations in both cymR and todS, which recruit a ring-fission hydrolase CmtE and induce the tod catabolic operon, respectively
-
Choi E.N., Cho M.C., Kim Y., Kim C.K., Lee K. Expansion of growth substrate range in Pseudomonas putida F1 by mutations in both cymR and todS, which recruit a ring-fission hydrolase CmtE and induce the tod catabolic operon, respectively. Microbiology 2003, 149:795-805.
-
(2003)
Microbiology
, vol.149
, pp. 795-805
-
-
Choi, E.N.1
Cho, M.C.2
Kim, Y.3
Kim, C.K.4
Lee, K.5
-
20
-
-
0036525713
-
Protein engineering of oxygenases for biocatalysis
-
Cirino P.C., Arnold F.H. Protein engineering of oxygenases for biocatalysis. Curr. Opin. Chem. Biol. 2002, 6:130-135.
-
(2002)
Curr. Opin. Chem. Biol.
, vol.6
, pp. 130-135
-
-
Cirino, P.C.1
Arnold, F.H.2
-
21
-
-
0034213801
-
Evolution of a metabolic pathway for degradation of a toxic xenobiotic: The patchwork approach
-
Copley S.D. Evolution of a metabolic pathway for degradation of a toxic xenobiotic: The patchwork approach. Trends Biochem. Sci. 2000, 25:261-265.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 261-265
-
-
Copley, S.D.1
-
23
-
-
0033861767
-
Effect of dissemination of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on 2,4-D degradation and on bacterial community structure in two different soil horizons
-
Dejonghe W., Goris J., El Fantroussi S., Hofte M., De Vos P., Verstraete W., Top E.M. Effect of dissemination of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on 2,4-D degradation and on bacterial community structure in two different soil horizons. Appl. Environ. Microbiol. 2000, 66:3297-3304.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3297-3304
-
-
Dejonghe, W.1
Goris, J.2
El Fantroussi, S.3
Hofte, M.4
De Vos, P.5
Verstraete, W.6
Top, E.M.7
-
24
-
-
0028912178
-
Single amino acids changes in the signal receptor domain of XylR resulted in mutants that stimulate transcription in the absence of effectors
-
Delgado A., Salto R., Marques S., Ramos J.L. Single amino acids changes in the signal receptor domain of XylR resulted in mutants that stimulate transcription in the absence of effectors. J. Biol. Chem. 1995, 270:5144-5150.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 5144-5150
-
-
Delgado, A.1
Salto, R.2
Marques, S.3
Ramos, J.L.4
-
25
-
-
20444417458
-
The evolution of IncP catabolic plasmids
-
Dennis J.J. The evolution of IncP catabolic plasmids. Curr. Opin. Biotechnol. 2005, 16:291-298.
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 291-298
-
-
Dennis, J.J.1
-
26
-
-
16544381551
-
Bacterial degradation of aromatic pollutants: A paradigm of metabolic versatility
-
Diaz E. Bacterial degradation of aromatic pollutants: A paradigm of metabolic versatility. Int. Microbiol. 2004, 7:173-180.
-
(2004)
Int. Microbiol.
, vol.7
, pp. 173-180
-
-
Diaz, E.1
-
27
-
-
0033772905
-
Bacterial promoters triggering biodegradation of aromatic pollutants
-
Diaz E., Prieto M.A. Bacterial promoters triggering biodegradation of aromatic pollutants. Curr. Opin. Biotechnol. 2000, 11:467-475.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 467-475
-
-
Diaz, E.1
Prieto, M.A.2
-
28
-
-
42549109171
-
Roles of effectors in XylS-dependent transcription activation: Intramolecular domain derepression and DNA binding
-
Dominguez-Cuevas P., Marin P., Busby S., Ramos J.L., Marques S. Roles of effectors in XylS-dependent transcription activation: Intramolecular domain derepression and DNA binding. J. Bacteriol. 2008, 190:3118-3128.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 3118-3128
-
-
Dominguez-Cuevas, P.1
Marin, P.2
Busby, S.3
Ramos, J.L.4
Marques, S.5
-
29
-
-
0029864057
-
P-Cumate catabolic pathway in Pseudomonas putida Fl: Cloning and characterization of DNA carrying the cmt operon
-
Eaton R.W. p-Cumate catabolic pathway in Pseudomonas putida Fl: Cloning and characterization of DNA carrying the cmt operon. J. Bacteriol. 1996, 178:1351-1362.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1351-1362
-
-
Eaton, R.W.1
-
30
-
-
0030911409
-
P-Cymene catabolic pathway in Pseudomonas putida F1: Cloning and characterization of DNA encoding conversion of p-cymene to p-cumate
-
Eaton R.W. p-Cymene catabolic pathway in Pseudomonas putida F1: Cloning and characterization of DNA encoding conversion of p-cymene to p-cumate. J. Bacteriol. 1997, 179:3171-3180.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3171-3180
-
-
Eaton, R.W.1
-
31
-
-
29644446062
-
Directed evolution of a ring-cleaving dioxygenase for polychlorinated biphenyl degradation
-
Fortin P.D., MacPherson I., Neau D.B., Bolin J.T., Eltis L.D. Directed evolution of a ring-cleaving dioxygenase for polychlorinated biphenyl degradation. J. Biol. Chem. 2005, 280:42307-42314.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 42307-42314
-
-
Fortin, P.D.1
MacPherson, I.2
Neau, D.B.3
Bolin, J.T.4
Eltis, L.D.5
-
32
-
-
35148899681
-
Stress-induced mutagenesis in bacteria
-
Foster P.L. Stress-induced mutagenesis in bacteria. Crit. Rev. Biochem. Mol. Biol. 2007, 42:373-397.
-
(2007)
Crit. Rev. Biochem. Mol. Biol.
, vol.42
, pp. 373-397
-
-
Foster, P.L.1
-
33
-
-
0034082905
-
Engineering dioxygenases for efficient degradation of environmental pollutants
-
Furukawa K. Engineering dioxygenases for efficient degradation of environmental pollutants. Curr. Opin. Biotechnol. 2000, 11:244-249.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 244-249
-
-
Furukawa, K.1
-
34
-
-
3843075198
-
Biphenyl dioxygenases: Functional versatilities and directed evolution
-
Furukawa K., Suenaga H., Goto M. Biphenyl dioxygenases: Functional versatilities and directed evolution. J. Bacteriol. 2004, 186:5189-5196.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 5189-5196
-
-
Furukawa, K.1
Suenaga, H.2
Goto, M.3
-
35
-
-
4444337310
-
Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1
-
Furusawa Y., Nagarajan V., Tanokura M., Masai E., Fukuda M., Senda T. Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1. J. Mol. Biol. 2004, 342:1041-1052.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1041-1052
-
-
Furusawa, Y.1
Nagarajan, V.2
Tanokura, M.3
Masai, E.4
Fukuda, M.5
Senda, T.6
-
36
-
-
33644745555
-
The clc element of Pseudomonas sp. Strain B13, a genomic island with various catabolic properties
-
Gaillard M., Vallaeys T., Vorholter F.J., Minoia M., Werlen C., Sentchilo V., Puhler A., van der Meer J.R. The clc element of Pseudomonas sp. Strain B13, a genomic island with various catabolic properties. J. Bacteriol. 2006, 188:1999-2013.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1999-2013
-
-
Gaillard, M.1
Vallaeys, T.2
Vorholter, F.J.3
Minoia, M.4
Werlen, C.5
Sentchilo, V.6
Puhler, A.7
van der Meer, J.R.8
-
37
-
-
0031753730
-
Toxicity assays and naphthalene utilization by natural bacteria selected in marine environments
-
Garcia E.M., Siegert I.G., Suarez P. Toxicity assays and naphthalene utilization by natural bacteria selected in marine environments. Bull. Environ. Contam. Toxicol. 1998, 61:370-377.
-
(1998)
Bull. Environ. Contam. Toxicol.
, vol.61
, pp. 370-377
-
-
Garcia, E.M.1
Siegert, I.G.2
Suarez, P.3
-
39
-
-
78650745591
-
Growth of Pseudomonas putida F1 on styrene requires increased catechol-2,3-dioxygenase activity, not a new hydrolase
-
George K.W., Kagle J., Junker L., Risen A., Hay A.G. Growth of Pseudomonas putida F1 on styrene requires increased catechol-2,3-dioxygenase activity, not a new hydrolase. Microbiology 2011, 157:89-98.
-
(2011)
Microbiology
, vol.157
, pp. 89-98
-
-
George, K.W.1
Kagle, J.2
Junker, L.3
Risen, A.4
Hay, A.G.5
-
40
-
-
0028915920
-
Spontaneous mutations in pcaH and -G, structural genes for protocatechuate 3,4-dioxygenase in Acinetobacter calcoaceticus
-
Gerischer U., Ornston L.N. Spontaneous mutations in pcaH and -G, structural genes for protocatechuate 3,4-dioxygenase in Acinetobacter calcoaceticus. J. Bacteriol. 1995, 177:1336-1347.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1336-1347
-
-
Gerischer, U.1
Ornston, L.N.2
-
41
-
-
0034029015
-
Aromatic hydrocarbon dioxygenases in environmental biotechnology
-
Gibson D.T., Parales R.E. Aromatic hydrocarbon dioxygenases in environmental biotechnology. Curr. Opin. Biotechnol. 2000, 11:236-243.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 236-243
-
-
Gibson, D.T.1
Parales, R.E.2
-
42
-
-
0000757667
-
Microbial degradation of aromatic hydrocarbons
-
Marcel Dekker, Inc., New York, D.T. Gibson (Ed.)
-
Gibson D.T., Subramanian V. Microbial degradation of aromatic hydrocarbons. Microbial Degradation of Organic Compounds 1984, 181-252. Marcel Dekker, Inc., New York. D.T. Gibson (Ed.).
-
(1984)
Microbial Degradation of Organic Compounds
, pp. 181-252
-
-
Gibson, D.T.1
Subramanian, V.2
-
43
-
-
0035997344
-
Error-prone repair DNA polymerases in prokaryotes and eukaryotes
-
Goodman M.F. Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu. Rev. Biochem. 2002, 71:17-50.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 17-50
-
-
Goodman, M.F.1
-
44
-
-
0024451702
-
Bacterial aromatic ring-cleavage enzymes are classified into two different gene families
-
Harayama S., Rekik M. Bacterial aromatic ring-cleavage enzymes are classified into two different gene families. J. Biol. Chem. 1989, 264:15328-15333.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 15328-15333
-
-
Harayama, S.1
Rekik, M.2
-
45
-
-
0026805891
-
Functional and evolutionary relationships among diverse oxygenases
-
Harayama S., Kok M., Neidle E.L. Functional and evolutionary relationships among diverse oxygenases. Annu. Rev. Microbiol. 1992, 46:565-601.
-
(1992)
Annu. Rev. Microbiol.
, vol.46
, pp. 565-601
-
-
Harayama, S.1
Kok, M.2
Neidle, E.L.3
-
46
-
-
0025056536
-
DNA sequences of genes encoding Acinetobacter calcoaceticus protocatechuate 3,4-dioxygenase: Evidence indicating shuffling of genes and of DNA sequences within genes during their evolutionary divergence
-
Hartnett C., Neidle E.L., Ngai K.L., Ornston L.N. DNA sequences of genes encoding Acinetobacter calcoaceticus protocatechuate 3,4-dioxygenase: Evidence indicating shuffling of genes and of DNA sequences within genes during their evolutionary divergence. J. Bacteriol. 1990, 172:956-966.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 956-966
-
-
Hartnett, C.1
Neidle, E.L.2
Ngai, K.L.3
Ornston, L.N.4
-
47
-
-
0029795374
-
The beta-ketoadipate pathway and the biology of self-identity
-
Harwood C.S., Parales R.E. The beta-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 1996, 50:553-590.
-
(1996)
Annu. Rev. Microbiol.
, vol.50
, pp. 553-590
-
-
Harwood, C.S.1
Parales, R.E.2
-
48
-
-
77956299931
-
Deep-sea oil plume enriches indigenous oil-degrading bacteria
-
330, 204-208
-
Hazen T.C., Dubinsky E.A., Desantis T.Z., Andersen G.L., Piceno Y.M., Singh N., Jansson J.K., Probst A., Borglin S.E., Fortney J.L., Stringfellow W.T., Bill M., et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science 2010, 330, 204-208.
-
(2010)
Science
-
-
Hazen, T.C.1
Dubinsky, E.A.2
Desantis, T.Z.3
Andersen, G.L.4
Piceno, Y.M.5
Singh, N.6
Jansson, J.K.7
Probst, A.8
Borglin, S.E.9
Fortney, J.L.10
Stringfellow, W.T.11
Bill, M.12
-
49
-
-
0030977550
-
Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site
-
Herrick J.B., Stuart-Keil K.G., Ghiorse W.C., Madsen E.L. Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site. Appl. Environ. Microbiol. 1997, 63:2330-2337.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2330-2337
-
-
Herrick, J.B.1
Stuart-Keil, K.G.2
Ghiorse, W.C.3
Madsen, E.L.4
-
50
-
-
0028944326
-
Localization and organization of phenol degradation genes of Pseudomonas putida strain H
-
Herrmann H., Muller C., Schmidt I., Mahnke J., Petruschka L., Hahnke K. Localization and organization of phenol degradation genes of Pseudomonas putida strain H. Mol. Gen. Genet. 1995, 247:240-246.
-
(1995)
Mol. Gen. Genet.
, vol.247
, pp. 240-246
-
-
Herrmann, H.1
Muller, C.2
Schmidt, I.3
Mahnke, J.4
Petruschka, L.5
Hahnke, K.6
-
51
-
-
0028287911
-
The biphenyl polychlorinated biphenyl-degradation locus (Bph) of Pseudomonas sp. LB400 encodes 4 additional metabolic enzymes
-
Hofer B., Backhaus S., Timmis K.N. The biphenyl polychlorinated biphenyl-degradation locus (Bph) of Pseudomonas sp. LB400 encodes 4 additional metabolic enzymes. Gene 1994, 144:9-16.
-
(1994)
Gene
, vol.144
, pp. 9-16
-
-
Hofer, B.1
Backhaus, S.2
Timmis, K.N.3
-
52
-
-
0014860437
-
Co-metabolism of methyl- and chloro-substituted catechols by an Achromobacter sp. possessing a new meta-cleaving oxygenase
-
Horvath R.S. Co-metabolism of methyl- and chloro-substituted catechols by an Achromobacter sp. possessing a new meta-cleaving oxygenase. Biochem. J. 1970, 119:871-876.
-
(1970)
Biochem. J.
, vol.119
, pp. 871-876
-
-
Horvath, R.S.1
-
53
-
-
0032924503
-
Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls
-
Hrywna Y., Tsoi T.V., Maltseva O.V., Quensen J.F., Tiedje J.M. Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls. Appl. Environ. Microbiol. 1999, 65:2163-2169.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2163-2169
-
-
Hrywna, Y.1
Tsoi, T.V.2
Maltseva, O.V.3
Quensen, J.F.4
Tiedje, J.M.5
-
54
-
-
0032540352
-
A novel [2Fe-2S] ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase
-
Hugo N., Armengaud J., Gaillard J., Timmis K.N., Jouanneau Y. A novel [2Fe-2S] ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase. J. Biol. Chem. 1998, 273:9622-9629.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 9622-9629
-
-
Hugo, N.1
Armengaud, J.2
Gaillard, J.3
Timmis, K.N.4
Jouanneau, Y.5
-
55
-
-
0033797755
-
Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: Evidence for their involvement in catechol dioxygenase reactivation
-
Hugo N., Meyer C., Armengaud J., Gaillard J., Timmis K.N., Jouanneau Y. Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: Evidence for their involvement in catechol dioxygenase reactivation. J. Bacteriol. 2000, 182:5580-5585.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5580-5585
-
-
Hugo, N.1
Meyer, C.2
Armengaud, J.3
Gaillard, J.4
Timmis, K.N.5
Jouanneau, Y.6
-
56
-
-
0345562652
-
-
Penwell Corporation, Oklahoma
-
Hyne N.J. Nontechnical Guide to Petroleum Geology, Exploration, Drilling, and Production 2001, Penwell Corporation, Oklahoma.
-
(2001)
Nontechnical Guide to Petroleum Geology, Exploration, Drilling, and Production
-
-
Hyne, N.J.1
-
57
-
-
0242608621
-
Pathways of oxidative damage
-
Imlay J.A. Pathways of oxidative damage. Annu. Rev. Microbiol. 2003, 57:395-418.
-
(2003)
Annu. Rev. Microbiol.
, vol.57
, pp. 395-418
-
-
Imlay, J.A.1
-
58
-
-
0033986392
-
HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1
-
Jaspers M.C., Suske W.A., Schmid A., Goslings D.A., Kohler H.P., van der Meer J.R. HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1. J. Bacteriol. 2000, 182:405-417.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 405-417
-
-
Jaspers, M.C.1
Suske, W.A.2
Schmid, A.3
Goslings, D.A.4
Kohler, H.P.5
van der Meer, J.R.6
-
59
-
-
77952926530
-
Nitroaromatic compounds, from synthesis to biodegradation
-
Ju K.S., Parales R.E. Nitroaromatic compounds, from synthesis to biodegradation. Microbiol. Mol. Biol. Rev. 2009, 74:250-272.
-
(2009)
Microbiol. Mol. Biol. Rev.
, vol.74
, pp. 250-272
-
-
Ju, K.S.1
Parales, R.E.2
-
60
-
-
60149088444
-
Genomic islands: Tools of bacterial horizontal gene transfer and evolution
-
Juhas M., van der Meer J.R., Gaillard M., Harding R.M., Hood D.W., Crook D.W. Genomic islands: Tools of bacterial horizontal gene transfer and evolution. FEMS Microbiol. Rev. 2009, 33:376-393.
-
(2009)
FEMS Microbiol. Rev.
, vol.33
, pp. 376-393
-
-
Juhas, M.1
van der Meer, J.R.2
Gaillard, M.3
Harding, R.M.4
Hood, D.W.5
Crook, D.W.6
-
61
-
-
0031684504
-
Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida
-
Kallastu A., Horak R., Kivisaar M. Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida. J. Bacteriol. 1998, 180:5306-5312.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 5306-5312
-
-
Kallastu, A.1
Horak, R.2
Kivisaar, M.3
-
62
-
-
33845592553
-
Characterization of naphthalene-degrading Pseudomonas species isolated from pollutant-contaminated sites: Oxidative stress during their growth on naphthalene
-
Kang Y.S., Kim Y.J., Jeon C.O., Park W. Characterization of naphthalene-degrading Pseudomonas species isolated from pollutant-contaminated sites: Oxidative stress during their growth on naphthalene. J. Microbiol. Biotechnol. 2006, 16:1819-1825.
-
(2006)
J. Microbiol. Biotechnol.
, vol.16
, pp. 1819-1825
-
-
Kang, Y.S.1
Kim, Y.J.2
Jeon, C.O.3
Park, W.4
-
63
-
-
35448988447
-
Overexpressing antioxidant enzymes enhances naphthalene biodegradation in Pseudomonas sp. strain As1
-
Kang Y.S., Lee Y., Jung H., Jeon C.O., Madsen E.L., Park W. Overexpressing antioxidant enzymes enhances naphthalene biodegradation in Pseudomonas sp. strain As1. Microbiology 2007, 153:3246-3254.
-
(2007)
Microbiology
, vol.153
, pp. 3246-3254
-
-
Kang, Y.S.1
Lee, Y.2
Jung, H.3
Jeon, C.O.4
Madsen, E.L.5
Park, W.6
-
64
-
-
0027138818
-
Regulation of the catechol 1,2-dioxygenase- and phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85
-
Kasak L., Horak R., Nurk A., Talvik K., Kivisaar M. Regulation of the catechol 1,2-dioxygenase- and phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85. J. Bacteriol. 1993, 175:8038-8042.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 8038-8042
-
-
Kasak, L.1
Horak, R.2
Nurk, A.3
Talvik, K.4
Kivisaar, M.5
-
65
-
-
0031006474
-
Promoter-creating mutations in Pseudomonas putida: A model system for the study of mutation in starving bacteria
-
Kasak L., Horak R., Kivisaar M. Promoter-creating mutations in Pseudomonas putida: A model system for the study of mutation in starving bacteria. Proc. Natl. Acad. Sci. USA 1997, 94:3134-3139.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 3134-3139
-
-
Kasak, L.1
Horak, R.2
Kivisaar, M.3
-
66
-
-
38949213307
-
Biodegradation of aromatic compounds: An overview of meta-fission product hydrolases
-
Khajamohiddin S., Repalle E.R., Pinjari A.B., Merrick M., Siddavattam D. Biodegradation of aromatic compounds: An overview of meta-fission product hydrolases. Crit. Rev. Microbiol. 2008, 34:13-31.
-
(2008)
Crit. Rev. Microbiol.
, vol.34
, pp. 13-31
-
-
Khajamohiddin, S.1
Repalle, E.R.2
Pinjari, A.B.3
Merrick, M.4
Siddavattam, D.5
-
67
-
-
41749112651
-
Organization of metabolic pathways and molecular-genetic mechanisms of xenobiotic degradation in microorganisms: A review
-
Khomenkov V.G., Shevelev A.B., Zhukov V.G., Zagustina N.A., Bezborodov A.M., Popov V.O. Organization of metabolic pathways and molecular-genetic mechanisms of xenobiotic degradation in microorganisms: A review. Appl. Biochem. Microbiol. 2008, 44:117-135.
-
(2008)
Appl. Biochem. Microbiol.
, vol.44
, pp. 117-135
-
-
Khomenkov, V.G.1
Shevelev, A.B.2
Zhukov, V.G.3
Zagustina, N.A.4
Bezborodov, A.M.5
Popov, V.O.6
-
68
-
-
0033402149
-
Functional analysis of genes involved in biphenyl, naphthalene, phenanthrene, and m-xylene degradation by Sphingomonas yanoikuyae B1
-
Kim E., Zylstra G.J. Functional analysis of genes involved in biphenyl, naphthalene, phenanthrene, and m-xylene degradation by Sphingomonas yanoikuyae B1. J. Ind. Microbiol. Biotechnol. 1999, 23:294-302.
-
(1999)
J. Ind. Microbiol. Biotechnol.
, vol.23
, pp. 294-302
-
-
Kim, E.1
Zylstra, G.J.2
-
69
-
-
0030837179
-
Evidence for the role of 2-hydroxychromene-2-carboxylate isomerase in the degradation of anthracene by Sphingomonas yanoikuyae B1
-
Kim E., Zylstra G.J., Freeman J.P., Heinze T.M., Deck J., Cerniglia C.E. Evidence for the role of 2-hydroxychromene-2-carboxylate isomerase in the degradation of anthracene by Sphingomonas yanoikuyae B1. FEMS Microbiol. Lett. 1997, 153:479-484.
-
(1997)
FEMS Microbiol. Lett.
, vol.153
, pp. 479-484
-
-
Kim, E.1
Zylstra, G.J.2
Freeman, J.P.3
Heinze, T.M.4
Deck, J.5
Cerniglia, C.E.6
-
70
-
-
0019457548
-
Inhibition of catechol 2,3-dioxygenase from Pseudomonas putida by 3-chlorocatechol
-
Klecka G.M., Gibson D.T. Inhibition of catechol 2,3-dioxygenase from Pseudomonas putida by 3-chlorocatechol. Appl. Environ. Microbiol. 1981, 41:1159-1165.
-
(1981)
Appl. Environ. Microbiol.
, vol.41
, pp. 1159-1165
-
-
Klecka, G.M.1
Gibson, D.T.2
-
71
-
-
0030986090
-
Biodegradation of 2,4-dichlorophenol through a distal meta-fission pathway
-
Koh S., McCullar M.V., Focht D.D. Biodegradation of 2,4-dichlorophenol through a distal meta-fission pathway. Appl. Environ. Microbiol. 1997, 63:2054-2057.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2054-2057
-
-
Koh, S.1
McCullar, M.V.2
Focht, D.D.3
-
72
-
-
0024119620
-
Degradation of 2-hydroxybiphenyl and 2,2'-dihydroxybiphenyl by Pseudomonas sp. strain HBP1
-
Kohler H.P., Kohler-Staub D., Focht D.D. Degradation of 2-hydroxybiphenyl and 2,2'-dihydroxybiphenyl by Pseudomonas sp. strain HBP1. Appl. Environ. Microbiol. 1988, 54:2683-2688.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 2683-2688
-
-
Kohler, H.P.1
Kohler-Staub, D.2
Focht, D.D.3
-
73
-
-
0027418864
-
Selection of Pseudomonas sp. strain HBP1 Prp for metabolism of 2-propylphenol and elucidation of the degradative pathway
-
Kohler H.P., van der Maarel M.J., Kohler-Staub D. Selection of Pseudomonas sp. strain HBP1 Prp for metabolism of 2-propylphenol and elucidation of the degradative pathway. Appl. Environ. Microbiol. 1993, 59:860-866.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 860-866
-
-
Kohler, H.P.1
van der Maarel, M.J.2
Kohler-Staub, D.3
-
74
-
-
0031874757
-
Enhanced degradation of polychlorinated biphenyls by directed evolution of biphenyl dioxygenase
-
Kumamaru T., Suenaga H., Mitsuoka M., Watanabe T., Furukawa K. Enhanced degradation of polychlorinated biphenyls by directed evolution of biphenyl dioxygenase. Nat. Biotechnol. 1998, 16:663-666.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 663-666
-
-
Kumamaru, T.1
Suenaga, H.2
Mitsuoka, M.3
Watanabe, T.4
Furukawa, K.5
-
75
-
-
2342419732
-
DNA replication fidelity
-
Kunkel T.A. DNA replication fidelity. J. Biol. Chem. 2004, 279:16895-16898.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 16895-16898
-
-
Kunkel, T.A.1
-
76
-
-
33744460220
-
The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins
-
Lacal J., Busch A., Guazzaroni M.E., Krell T., Ramos J.L. The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins. Proc. Natl. Acad. Sci. USA 2006, 103:8191-8196.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 8191-8196
-
-
Lacal, J.1
Busch, A.2
Guazzaroni, M.E.3
Krell, T.4
Ramos, J.L.5
-
77
-
-
38349194474
-
Hierarchical binding of the TodT response regulator to its multiple recognition sites at the tod pathway operon promoter
-
Lacal J., Guazzaroni M.E., Busch A., Krell T., Ramos J.L. Hierarchical binding of the TodT response regulator to its multiple recognition sites at the tod pathway operon promoter. J. Mol. Biol. 2008, 376:325-337.
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 325-337
-
-
Lacal, J.1
Guazzaroni, M.E.2
Busch, A.3
Krell, T.4
Ramos, J.L.5
-
78
-
-
0033912879
-
Characterization of a second tfd gene cluster for chlorophenol and chlorocatechol metabolism on plasmid pJP4 in Ralstonia eutropha JMP134(pJP4)
-
Laemmli C.M., Leveau J.H.J., Zehnder A.J.B., van der Meer J.R. Characterization of a second tfd gene cluster for chlorophenol and chlorocatechol metabolism on plasmid pJP4 in Ralstonia eutropha JMP134(pJP4). J. Bacteriol. 2000, 182:4165-4172.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 4165-4172
-
-
Laemmli, C.M.1
Leveau, J.H.J.2
Zehnder, A.J.B.3
van der Meer, J.R.4
-
79
-
-
0031038354
-
A bacterial basic region leucine zipper histidine kinase regulating toluene degradation
-
Lau P.C., Wang Y., Patel A., Labbe D., Bergeron H., Brousseau R., Konishi Y., Rawlings M. A bacterial basic region leucine zipper histidine kinase regulating toluene degradation. Proc. Natl. Acad. Sci. USA 1997, 94:1453-1458.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1453-1458
-
-
Lau, P.C.1
Wang, Y.2
Patel, A.3
Labbe, D.4
Bergeron, H.5
Brousseau, R.6
Konishi, Y.7
Rawlings, M.8
-
80
-
-
0028434213
-
Metabolic engineering of Pseudomonas putida for the simultaneous biodegradation of benzene, toluene, and p-xylene mixture
-
Lee J.Y., Roh J.R., Kim H.S. Metabolic engineering of Pseudomonas putida for the simultaneous biodegradation of benzene, toluene, and p-xylene mixture. Biotechnol. Bioeng. 1994, 43:1146-1152.
-
(1994)
Biotechnol. Bioeng.
, vol.43
, pp. 1146-1152
-
-
Lee, J.Y.1
Roh, J.R.2
Kim, H.S.3
-
81
-
-
0029045958
-
Combination of the tod and the tol pathways in redesigning a metabolic route of Pseudomonas putida for the mineralization of a benzene, toluene, and p-xylene mixture
-
Lee J.Y., Jung K.H., Choi S.H., Kim H.S. Combination of the tod and the tol pathways in redesigning a metabolic route of Pseudomonas putida for the mineralization of a benzene, toluene, and p-xylene mixture. Appl. Environ. Microbiol. 1995, 61:2211-2217.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2211-2217
-
-
Lee, J.Y.1
Jung, K.H.2
Choi, S.H.3
Kim, H.S.4
-
82
-
-
33745795591
-
Identification and expression of the cym, cmt, and tod catabolic genes from Pseudomonas putida KL47: Expression of the regulatory todST genes as a factor for catabolic adaptation
-
Lee K., Ryu E.K., Choi K.S., Cho M.C., Jeong J.J., Choi E.N., Lee S.O., Yoon D.Y., Hwang I., Kim C.K. Identification and expression of the cym, cmt, and tod catabolic genes from Pseudomonas putida KL47: Expression of the regulatory todST genes as a factor for catabolic adaptation. J. Microbiol. 2006, 44:192-199.
-
(2006)
J. Microbiol.
, vol.44
, pp. 192-199
-
-
Lee, K.1
Ryu, E.K.2
Choi, K.S.3
Cho, M.C.4
Jeong, J.J.5
Choi, E.N.6
Lee, S.O.7
Yoon, D.Y.8
Hwang, I.9
Kim, C.K.10
-
84
-
-
0026743341
-
The electron-transport proteins of hydroxylating bacterial dioxygenases
-
Mason J.R., Cammack R. The electron-transport proteins of hydroxylating bacterial dioxygenases. Annu. Rev. Microbiol. 1992, 46:277-305.
-
(1992)
Annu. Rev. Microbiol.
, vol.46
, pp. 277-305
-
-
Mason, J.R.1
Cammack, R.2
-
85
-
-
0031018281
-
Organisation of the bph gene cluster of transposon Tn4371, encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl compounds
-
Merlin C., Springael D., Mergeay M., Toussaint A. Organisation of the bph gene cluster of transposon Tn4371, encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl compounds. Mol. Gen. Genet. 1997, 253:499-506.
-
(1997)
Mol. Gen. Genet.
, vol.253
, pp. 499-506
-
-
Merlin, C.1
Springael, D.2
Mergeay, M.3
Toussaint, A.4
-
86
-
-
0032905533
-
Tn4371: A modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4/Ti-like transfer functions
-
Merlin C., Springael D., Toussaint A. Tn4371: A modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4/Ti-like transfer functions. Plasmid 1999, 41:40-54.
-
(1999)
Plasmid
, vol.41
, pp. 40-54
-
-
Merlin, C.1
Springael, D.2
Toussaint, A.3
-
87
-
-
0019774547
-
Excision of the 40kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats
-
Meulien P., Downing R.G., Broda P. Excision of the 40kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats. Mol. Gen. Genet. 1981, 184:97-101.
-
(1981)
Mol. Gen. Genet.
, vol.184
, pp. 97-101
-
-
Meulien, P.1
Downing, R.G.2
Broda, P.3
-
88
-
-
24144450920
-
-
Milennium Assessment, Island Press, Washington, DC
-
Ecosystems and Human Well-Being: Synthesis 2005, Milennium Assessment, Island Press, Washington, DC.
-
(2005)
Ecosystems and Human Well-Being: Synthesis
-
-
-
89
-
-
29144512759
-
Engineering Pseudomonas fluorescens for biodegradation of 2,4-dinitrotoluene
-
Monti M.R., Smania A.M., Fabro G., Alvarez M.E., Argarana C.E. Engineering Pseudomonas fluorescens for biodegradation of 2,4-dinitrotoluene. Appl. Environ. Microbiol. 2005, 71:8864-8872.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8864-8872
-
-
Monti, M.R.1
Smania, A.M.2
Fabro, G.3
Alvarez, M.E.4
Argarana, C.E.5
-
90
-
-
0037345571
-
Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia
-
Muller T.A., Werlen C., Spain J., van der Meer J.R. Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia. Environ. Microbiol. 2003, 5:163-173.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 163-173
-
-
Muller, T.A.1
Werlen, C.2
Spain, J.3
van der Meer, J.R.4
-
91
-
-
0036202173
-
Dispersal of plasmid pJP4 in unsaturated and saturated 2,4-dichlorophenoxyacetic acid contaminated soil
-
Newby D.T., Pepper I.L. Dispersal of plasmid pJP4 in unsaturated and saturated 2,4-dichlorophenoxyacetic acid contaminated soil. FEMS Microbiol. Ecol. 2002, 39:157-164.
-
(2002)
FEMS Microbiol. Ecol.
, vol.39
, pp. 157-164
-
-
Newby, D.T.1
Pepper, I.L.2
-
92
-
-
0033855541
-
Comparison of 2,4-dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors
-
Newby D.T., Gentry T.J., Pepper I.L. Comparison of 2,4-dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors. Appl. Environ. Microbiol. 2000, 66:3399-3407.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3399-3407
-
-
Newby, D.T.1
Gentry, T.J.2
Pepper, I.L.3
-
93
-
-
0033989202
-
Detection and characterization of plasmid pJP4 transfer to indigenous soil bacteria
-
Newby D.T., Josephson K.L., Pepper I.L. Detection and characterization of plasmid pJP4 transfer to indigenous soil bacteria. Appl. Environ. Microbiol. 2000, 66:290-296.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 290-296
-
-
Newby, D.T.1
Josephson, K.L.2
Pepper, I.L.3
-
94
-
-
0034019603
-
A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715
-
Nishi A., Tominaga K., Furukawa K. A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715. J. Bacteriol. 2000, 182:1949-1955.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1949-1955
-
-
Nishi, A.1
Tominaga, K.2
Furukawa, K.3
-
95
-
-
33750344433
-
Environmental stress and lesion-bypass DNA polymerases
-
Nohmi T. Environmental stress and lesion-bypass DNA polymerases. Annu. Rev. Microbiol. 2006, 60:231-253.
-
(2006)
Annu. Rev. Microbiol.
, vol.60
, pp. 231-253
-
-
Nohmi, T.1
-
96
-
-
0027287703
-
In-vivo-generated fusion promoters in Pseudomonas putida
-
Nurk A., Tamm A., Horak R., Kivisaar M. In-vivo-generated fusion promoters in Pseudomonas putida. Gene 1993, 127:23-29.
-
(1993)
Gene
, vol.127
, pp. 23-29
-
-
Nurk, A.1
Tamm, A.2
Horak, R.3
Kivisaar, M.4
-
97
-
-
0035151436
-
Pseudomonas putida CE2010 can degrade biphenyl by a mosaic pathway encoded by the tod operon and cmtE, which are identical to those of P. putida F1 except for a single base difference in the operator-promoter region of the cmt operon
-
Ohta Y., Maeda M., Kudo T. Pseudomonas putida CE2010 can degrade biphenyl by a mosaic pathway encoded by the tod operon and cmtE, which are identical to those of P. putida F1 except for a single base difference in the operator-promoter region of the cmt operon. Microbiology 2001, 147:31-41.
-
(2001)
Microbiology
, vol.147
, pp. 31-41
-
-
Ohta, Y.1
Maeda, M.2
Kudo, T.3
-
98
-
-
0031454105
-
Cloning and sequence analysis of a catechol 2,3-dioxygenase gene from the nitrobenzene-degrading strain Comamonas sp. JS765
-
Parales R.E., Ontl T.A., Gibson D.T. Cloning and sequence analysis of a catechol 2,3-dioxygenase gene from the nitrobenzene-degrading strain Comamonas sp. JS765. J. Ind. Microbiol. Biotechnol. 1997, 19:385-391.
-
(1997)
J. Ind. Microbiol. Biotechnol.
, vol.19
, pp. 385-391
-
-
Parales, R.E.1
Ontl, T.A.2
Gibson, D.T.3
-
99
-
-
0031958521
-
Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems
-
Parales R.E., Emig M.D., Lynch N.A., Gibson D.T. Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems. J. Bacteriol. 1998, 180:2337-2344.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2337-2344
-
-
Parales, R.E.1
Emig, M.D.2
Lynch, N.A.3
Gibson, D.T.4
-
100
-
-
11244337594
-
Characterization in Pseudomonas putida Cg1 of nahR and its role in bacterial survival in soil
-
Park W., Madsen E.L. Characterization in Pseudomonas putida Cg1 of nahR and its role in bacterial survival in soil. Appl. Microbiol. Biotechnol. 2004, 66:209-216.
-
(2004)
Appl. Microbiol. Biotechnol.
, vol.66
, pp. 209-216
-
-
Park, W.1
Madsen, E.L.2
-
101
-
-
0036023038
-
Chloroplast-type ferredoxin involved in reactivation of catechol 2,3-dioxygenase from Pseudomonas sp. S 47
-
Park D.W., Chae J.C., Kim Y., Iida T., Kudo T., Kim C.K. Chloroplast-type ferredoxin involved in reactivation of catechol 2,3-dioxygenase from Pseudomonas sp. S 47. J. Biochem. Mol. Biol. 2002, 35:432-436.
-
(2002)
J. Biochem. Mol. Biol.
, vol.35
, pp. 432-436
-
-
Park, D.W.1
Chae, J.C.2
Kim, Y.3
Iida, T.4
Kudo, T.5
Kim, C.K.6
-
102
-
-
2442593799
-
Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: Toxicity of naphthalene and its metabolites
-
Park W., Jeon C.O., Cadillo H., DeRito C., Madsen E.L. Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: Toxicity of naphthalene and its metabolites. Appl. Microbiol. Biotechnol. 2004, 64:429-435.
-
(2004)
Appl. Microbiol. Biotechnol.
, vol.64
, pp. 429-435
-
-
Park, W.1
Jeon, C.O.2
Cadillo, H.3
DeRito, C.4
Madsen, E.L.5
-
103
-
-
0027938931
-
An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols
-
Pavel H., Forsman M., Shingler V. An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols. J. Bacteriol. 1994, 176:7550-7557.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 7550-7557
-
-
Pavel, H.1
Forsman, M.2
Shingler, V.3
-
104
-
-
0037371162
-
Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134(pJP4) in 3-chlorobenzoic acid
-
Perez-Pantoja D., Ledger T., Pieper D.H., Gonzalez B. Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134(pJP4) in 3-chlorobenzoic acid. J. Bacteriol. 2003, 185:1534-1542.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1534-1542
-
-
Perez-Pantoja, D.1
Ledger, T.2
Pieper, D.H.3
Gonzalez, B.4
-
105
-
-
0030780752
-
Acquisition of a deliberately introduced phenol degradation operon, pheBA, by different indigenous Pseudomonas species
-
Peters M., Heinaru E., Talpsep E., Wand H., Stottmeister U., Heinaru A., Nurk A. Acquisition of a deliberately introduced phenol degradation operon, pheBA, by different indigenous Pseudomonas species. Appl. Environ. Microbiol. 1997, 63:4899-4906.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4899-4906
-
-
Peters, M.1
Heinaru, E.2
Talpsep, E.3
Wand, H.4
Stottmeister, U.5
Heinaru, A.6
Nurk, A.7
-
107
-
-
0027308193
-
In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin-A bacterial strategy to expand the substrate-specificity of aromatic degradative pathways
-
Polissi A., Harayama S. In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin-A bacterial strategy to expand the substrate-specificity of aromatic degradative pathways. EMBO J. 1993, 12:3339-3347.
-
(1993)
EMBO J.
, vol.12
, pp. 3339-3347
-
-
Polissi, A.1
Harayama, S.2
-
108
-
-
0028672047
-
Genetics and biochemistry of phenol degradation by Pseudomonas sp. CF600
-
Powlowski J., Shingler V. Genetics and biochemistry of phenol degradation by Pseudomonas sp. CF600. Biodegradation 1994, 5:219-236.
-
(1994)
Biodegradation
, vol.5
, pp. 219-236
-
-
Powlowski, J.1
Shingler, V.2
-
109
-
-
35448975374
-
Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2
-
Pumphrey G.M., Madsen E.L. Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2. Microbiology 2007, 153:3730-3738.
-
(2007)
Microbiology
, vol.153
, pp. 3730-3738
-
-
Pumphrey, G.M.1
Madsen, E.L.2
-
110
-
-
0343419040
-
Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria
-
Ramos J.L., Stolz A., Reineke W., Timmis K.N. Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria. Proc. Natl. Acad. Sci. USA 1986, 83:8467-8471.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 8467-8471
-
-
Ramos, J.L.1
Stolz, A.2
Reineke, W.3
Timmis, K.N.4
-
111
-
-
0023667753
-
Redesigning metabolic routes: Manipulation of TOL plasmid pathway for catabolism of alkylbenzoates
-
Ramos J.L., Wasserfallen A., Rose K., Timmis K.N. Redesigning metabolic routes: Manipulation of TOL plasmid pathway for catabolism of alkylbenzoates. Science 1987, 235:593-596.
-
(1987)
Science
, vol.235
, pp. 593-596
-
-
Ramos, J.L.1
Wasserfallen, A.2
Rose, K.3
Timmis, K.N.4
-
112
-
-
0030860391
-
Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
-
Ramos J.L., Marques S., Timmis K.N. Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Annu. Rev. Microbiol. 1997, 51:341-373.
-
(1997)
Annu. Rev. Microbiol.
, vol.51
, pp. 341-373
-
-
Ramos, J.L.1
Marques, S.2
Timmis, K.N.3
-
113
-
-
0036405482
-
Mechanisms of solvent tolerance in gram-negative bacteria
-
Ramos J.L., Duque E., Gallegos M.T., Godoy P., Ramos-Gonzalez M.I., Rojas A., Teran W., Segura A. Mechanisms of solvent tolerance in gram-negative bacteria. Annu. Rev. Microbiol. 2002, 56:743-768.
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 743-768
-
-
Ramos, J.L.1
Duque, E.2
Gallegos, M.T.3
Godoy, P.4
Ramos-Gonzalez, M.I.5
Rojas, A.6
Teran, W.7
Segura, A.8
-
114
-
-
0031751325
-
Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13
-
Ravatn R., Studer S., Springael D., Zehnder A.J., van der Meer J.R. Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13. J. Bacteriol. 1998, 180:4360-4369.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4360-4369
-
-
Ravatn, R.1
Studer, S.2
Springael, D.3
Zehnder, A.J.4
van der Meer, J.R.5
-
115
-
-
0031756487
-
Development of hybrid strains for the mineralization of chloroaromatics by patchwork assembly
-
Reineke W. Development of hybrid strains for the mineralization of chloroaromatics by patchwork assembly. Annu. Rev. Microbiol. 1998, 52:287-331.
-
(1998)
Annu. Rev. Microbiol.
, vol.52
, pp. 287-331
-
-
Reineke, W.1
-
116
-
-
34248577225
-
The ttgGHI solvent efflux pump operon of Pseudomonas putida DOT-T1E is located on a large self-transmissible plasmid
-
Rodríguez-Herva J., Garcia V., Hurtado A., Seguar A., Ramos J.L. The ttgGHI solvent efflux pump operon of Pseudomonas putida DOT-T1E is located on a large self-transmissible plasmid. Environ. Microbiol. 2007, 9:1550-1561.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1550-1561
-
-
Rodríguez-Herva, J.1
Garcia, V.2
Hurtado, A.3
Seguar, A.4
Ramos, J.L.5
-
117
-
-
0023644204
-
Assemblage of ortho cleavage route for simultaneous degradation of chloro- and methylaromatics
-
Rojo F., Pieper D.H., Engesser K.H., Knackmuss H.J., Timmis K.N. Assemblage of ortho cleavage route for simultaneous degradation of chloro- and methylaromatics. Science 1987, 238:1395-1398.
-
(1987)
Science
, vol.238
, pp. 1395-1398
-
-
Rojo, F.1
Pieper, D.H.2
Engesser, K.H.3
Knackmuss, H.J.4
Timmis, K.N.5
-
119
-
-
0015521997
-
The metabolic divergence in the meta cleavage of catechols by Pseudomonas putida NCIB 10015. Physiological significance and evolutionary implications
-
Sala-Trepat J.M., Murray K., Williams P.A. The metabolic divergence in the meta cleavage of catechols by Pseudomonas putida NCIB 10015. Physiological significance and evolutionary implications. Eur. J. Biochem. 1972, 28:347-356.
-
(1972)
Eur. J. Biochem.
, vol.28
, pp. 347-356
-
-
Sala-Trepat, J.M.1
Murray, K.2
Williams, P.A.3
-
120
-
-
0036178355
-
Occurrence and properties of glutathione S-transferases in phenol-degrading Pseudomonas strains
-
Santos P.M., Mignogna G., Heipieper H.J., Zennaro E. Occurrence and properties of glutathione S-transferases in phenol-degrading Pseudomonas strains. Res. Microbiol. 2002, 153:89-98.
-
(2002)
Res. Microbiol.
, vol.153
, pp. 89-98
-
-
Santos, P.M.1
Mignogna, G.2
Heipieper, H.J.3
Zennaro, E.4
-
121
-
-
4444316792
-
Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics
-
Santos P.M., Benndorf D., Sa-Correia I. Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics. Proteomics 2004, 4:2640-2652.
-
(2004)
Proteomics
, vol.4
, pp. 2640-2652
-
-
Santos, P.M.1
Benndorf, D.2
Sa-Correia, I.3
-
122
-
-
0035143589
-
Acute toxicity of (chloro-)catechols and (chloro-)catechol-copper combinations in Escherichia coli corresponds to their membrane toxicity in vitro
-
Schweigert N., Hunziker R.W., Escher B.I., Eggen R.I.L. Acute toxicity of (chloro-)catechols and (chloro-)catechol-copper combinations in Escherichia coli corresponds to their membrane toxicity in vitro. Environ. Toxicol. Chem. 2001, 20:239-247.
-
(2001)
Environ. Toxicol. Chem.
, vol.20
, pp. 239-247
-
-
Schweigert, N.1
Hunziker, R.W.2
Escher, B.I.3
Eggen, R.I.L.4
-
123
-
-
0035211211
-
Chemical properties of catechols and their molecular modes of toxic action in cells, from microorganisms to mammals
-
Schweigert N., Zehnder A.J.B., Eggen R.I.L. Chemical properties of catechols and their molecular modes of toxic action in cells, from microorganisms to mammals. Environ. Microbiol. 2001, 3:81-91.
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 81-91
-
-
Schweigert, N.1
Zehnder, A.J.B.2
Eggen, R.I.L.3
-
124
-
-
0344475305
-
Integrated regulation in response to aromatic compounds: From signal sensing to attractive behaviour
-
Shingler V. Integrated regulation in response to aromatic compounds: From signal sensing to attractive behaviour. Environ. Microbiol. 2003, 5:1226-1241.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 1226-1241
-
-
Shingler, V.1
-
125
-
-
0029132191
-
Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds
-
Shingler V., Pavel H. Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds. Mol. Microbiol. 1995, 17:505-513.
-
(1995)
Mol. Microbiol.
, vol.17
, pp. 505-513
-
-
Shingler, V.1
Pavel, H.2
-
127
-
-
0022886431
-
Chromosomal location of TOL plasmid DNA in Pseudomonas putida
-
Sinclair M.I., Maxwell P.C., Lyon B.R., Holloway B.W. Chromosomal location of TOL plasmid DNA in Pseudomonas putida. J. Bacteriol. 1986, 168:1302-1308.
-
(1986)
J. Bacteriol.
, vol.168
, pp. 1302-1308
-
-
Sinclair, M.I.1
Maxwell, P.C.2
Lyon, B.R.3
Holloway, B.W.4
-
128
-
-
0842303297
-
Horizontal gene transfer and microbial adaptation to xenobiotics: New types of mobile genetic elements and lessons from ecological studies
-
Springael D., Top E.M. Horizontal gene transfer and microbial adaptation to xenobiotics: New types of mobile genetic elements and lessons from ecological studies. Trends Microbiol. 2004, 12:53-58.
-
(2004)
Trends Microbiol.
, vol.12
, pp. 53-58
-
-
Springael, D.1
Top, E.M.2
-
129
-
-
0035166827
-
Occurrence of Tn4371-related mobile elements and sequences in (chloro)biphenyl-degrading bacteria
-
Springael D., Ryngaert A., Merlin C., Toussaint A., Mergeay M. Occurrence of Tn4371-related mobile elements and sequences in (chloro)biphenyl-degrading bacteria. Appl. Environ. Microbiol. 2001, 67:42-50.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 42-50
-
-
Springael, D.1
Ryngaert, A.2
Merlin, C.3
Toussaint, A.4
Mergeay, M.5
-
130
-
-
0034878844
-
Directed evolution of biphenyl dioxygenase: Emergence of enhanced degradation capacity for benzene, toluene, and alkylbenzenes
-
Suenaga H., Mitsuoka M., Ura Y., Watanabe T., Furukawa K. Directed evolution of biphenyl dioxygenase: Emergence of enhanced degradation capacity for benzene, toluene, and alkylbenzenes. J. Bacteriol. 2001, 183:5441-5444.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 5441-5444
-
-
Suenaga, H.1
Mitsuoka, M.2
Ura, Y.3
Watanabe, T.4
Furukawa, K.5
-
131
-
-
1942475764
-
Involvement of error-prone DNA polymerase IV in stationary-phase mutagenesis in Pseudomonas putida
-
Tegova R., Tover A., Tarassova K., Tark M., Kivisaar M. Involvement of error-prone DNA polymerase IV in stationary-phase mutagenesis in Pseudomonas putida. J. Bacteriol. 2004, 186:2735-2744.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2735-2744
-
-
Tegova, R.1
Tover, A.2
Tarassova, K.3
Tark, M.4
Kivisaar, M.5
-
132
-
-
0003681308
-
-
Tesoro Petroleum Companies, Inc., Accessed February 25, 2011
-
Material safety data sheet: gasoline 2003, Tesoro Petroleum Companies, Inc., Accessed February 25, 2011. http://firstfuelbank.com/msds/Tesoro.pdf.
-
(2003)
Material safety data sheet: gasoline
-
-
-
133
-
-
0003965498
-
-
Harwood Academic Publishers, Amsterdam, NL
-
Thomas C.M. The Horizontal Gene Pool 2000, Harwood Academic Publishers, Amsterdam, NL.
-
(2000)
The Horizontal Gene Pool
-
-
Thomas, C.M.1
-
134
-
-
0032795933
-
Bacteria designed for bioremediation
-
Timmis K.N., Pieper D.H. Bacteria designed for bioremediation. Trends Biotechnol. 1999, 17:201-204.
-
(1999)
Trends Biotechnol.
, vol.17
, pp. 201-204
-
-
Timmis, K.N.1
Pieper, D.H.2
-
135
-
-
0038820052
-
The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds
-
Top E.M., Springael D. The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr. Opin. Biotechnol. 2003, 14:262-269.
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 262-269
-
-
Top, E.M.1
Springael, D.2
-
136
-
-
0036848574
-
Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters
-
Top E.M., Springael D., Boon N. Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters. FEMS Microbiol. Ecol. 2002, 42:199-208.
-
(2002)
FEMS Microbiol. Ecol.
, vol.42
, pp. 199-208
-
-
Top, E.M.1
Springael, D.2
Boon, N.3
-
137
-
-
3042826882
-
Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways
-
Trefault N., De la Iglesia R., Molina A.M., Manzano M., Ledger T., Perez-Pantoja D., Sanchez M.A., Stuardo M., Gonzalez B. Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways. Environ. Microbiol. 2004, 6:655-668.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 655-668
-
-
Trefault, N.1
De la Iglesia, R.2
Molina, A.M.3
Manzano, M.4
Ledger, T.5
Perez-Pantoja, D.6
Sanchez, M.A.7
Stuardo, M.8
Gonzalez, B.9
-
138
-
-
4544275675
-
Bacterial transcriptional regulators for degradation pathways of aromatic compounds
-
Tropel D., van der Meer J.R. Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiol. Mol. Biol. Rev. 2004, 68:474-486.
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 474-486
-
-
Tropel, D.1
van der Meer, J.R.2
-
139
-
-
0036118468
-
Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31
-
Tropel D., Meyer C., Armengaud J., Jouanneau Y. Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31. Arch. Microbiol. 2002, 177:345-351.
-
(2002)
Arch. Microbiol.
, vol.177
, pp. 345-351
-
-
Tropel, D.1
Meyer, C.2
Armengaud, J.3
Jouanneau, Y.4
-
140
-
-
0032936104
-
Mobile catabolic genes in bacteria
-
Tsuda M., Tan H.M., Nishi A., Furukawa K. Mobile catabolic genes in bacteria. J. Biosci. Bioeng. 1999, 87:401-410.
-
(1999)
J. Biosci. Bioeng.
, vol.87
, pp. 401-410
-
-
Tsuda, M.1
Tan, H.M.2
Nishi, A.3
Furukawa, K.4
-
141
-
-
33750009593
-
Use of genetically engineered microorganisms (GEMs) for the bioremediation of contaminants
-
Urgun-Demirtas M., Stark B., Pagilla K. Use of genetically engineered microorganisms (GEMs) for the bioremediation of contaminants. Crit. Rev. Biotechnol. 2006, 26:145-164.
-
(2006)
Crit. Rev. Biotechnol.
, vol.26
, pp. 145-164
-
-
Urgun-Demirtas, M.1
Stark, B.2
Pagilla, K.3
-
142
-
-
0037127253
-
The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates
-
Vaillancourt F.H., Labbe G., Drouin N.M., Fortin P.D., Eltis L.D. The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates. J. Biol. Chem. 2002, 277:2019-2027.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 2019-2027
-
-
Vaillancourt, F.H.1
Labbe, G.2
Drouin, N.M.3
Fortin, P.D.4
Eltis, L.D.5
-
143
-
-
27544457806
-
Molecular basis for the substrate selectivity of bicyclic and monocyclic extradiol dioxygenases
-
Vaillancourt F.H., Fortin P.D., Labbe G., Drouin N.M., Karim Z., Agar N.Y., Eltis L.D. Molecular basis for the substrate selectivity of bicyclic and monocyclic extradiol dioxygenases. Biochem. Biophys. Res. Commun. 2005, 338:215-222.
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.338
, pp. 215-222
-
-
Vaillancourt, F.H.1
Fortin, P.D.2
Labbe, G.3
Drouin, N.M.4
Karim, Z.5
Agar, N.Y.6
Eltis, L.D.7
-
145
-
-
0038534159
-
Evolution of metabolic pathways for degradation of environmental pollutants
-
John Wiley & Sons, New York, G. Bitton (Ed.)
-
van der Meer J.R. Evolution of metabolic pathways for degradation of environmental pollutants. Encyclopedia of Environmental Microbiology 2002, 1194-1207. John Wiley & Sons, New York. G. Bitton (Ed.).
-
(2002)
Encyclopedia of Environmental Microbiology
, pp. 1194-1207
-
-
van der Meer, J.R.1
-
146
-
-
32444440701
-
Environmental pollution promotes selection of microbial degradation pathways
-
van der Meer J.R. Environmental pollution promotes selection of microbial degradation pathways. Front. Ecol. Environ. 2006, 4:35-42.
-
(2006)
Front. Ecol. Environ.
, vol.4
, pp. 35-42
-
-
van der Meer, J.R.1
-
147
-
-
0038504021
-
Genomic islands and the evolution of catabolic pathways in bacteria
-
van der Meer J.R., Sentchilo V. Genomic islands and the evolution of catabolic pathways in bacteria. Curr. Opin. Biotechnol. 2003, 14:248-254.
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 248-254
-
-
van der Meer, J.R.1
Sentchilo, V.2
-
148
-
-
0023637527
-
Degradation of low concentrations of dichlorobenzenes and 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 in nonsterile soil columns
-
van der Meer J.R., Roelofsen W., Schraa G., Zehnder A.J.B. Degradation of low concentrations of dichlorobenzenes and 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 in nonsterile soil columns. FEMS Microbiol. Lett. 1987, 45:333-341.
-
(1987)
FEMS Microbiol. Lett.
, vol.45
, pp. 333-341
-
-
van der Meer, J.R.1
Roelofsen, W.2
Schraa, G.3
Zehnder, A.J.B.4
-
149
-
-
0025719238
-
Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51
-
van der Meer J.R., Zehnder A.J., de Vos W.M. Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51. J. Bacteriol. 1991, 173:7077-7083.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 7077-7083
-
-
van der Meer, J.R.1
Zehnder, A.J.2
de Vos, W.M.3
-
150
-
-
0026480282
-
Molecular mechanisms of genetic adaptation to xenobiotic compounds
-
van der Meer J.R., Devos W.M., Harayama S., Zehnder A.J.B. Molecular mechanisms of genetic adaptation to xenobiotic compounds. Microbiol. Rev. 1992, 56:677-694.
-
(1992)
Microbiol. Rev.
, vol.56
, pp. 677-694
-
-
van der Meer, J.R.1
Devos, W.M.2
Harayama, S.3
Zehnder, A.J.B.4
-
151
-
-
0031765099
-
Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater
-
van der Meer J.R., Werlen C., Nishino S.F., Spain J.C. Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater. Appl. Environ. Microbiol. 1998, 64:4185-4193.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4185-4193
-
-
van der Meer, J.R.1
Werlen, C.2
Nishino, S.F.3
Spain, J.C.4
-
152
-
-
0035096460
-
The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases
-
van der Meer J.R., Ravatn R., Sentchilo V. The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases. Arch. Microbiol. 2001, 175:79-85.
-
(2001)
Arch. Microbiol.
, vol.175
, pp. 79-85
-
-
van der Meer, J.R.1
Ravatn, R.2
Sentchilo, V.3
-
153
-
-
4544356433
-
Biocatalytic synthesis of polycatechols from toxic aromatic compounds
-
Ward G., Parales R.E., Dosoretz C.G. Biocatalytic synthesis of polycatechols from toxic aromatic compounds. Environ. Sci. Technol. 2004, 38:4753-4757.
-
(2004)
Environ. Sci. Technol.
, vol.38
, pp. 4753-4757
-
-
Ward, G.1
Parales, R.E.2
Dosoretz, C.G.3
-
154
-
-
0029920974
-
The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradation
-
Werlen C., Kohler H.P.E., van derMeer J.R. The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradation. J. Biol. Chem. 1996, 271:4009-4016.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 4009-4016
-
-
Werlen, C.1
Kohler, H.P.E.2
van derMeer, J.R.3
-
155
-
-
0016593935
-
Metabolism of toluene and xylenes by Pseudomonas putida mt-2: Evidence for a new function of the TOL plasmid
-
Worsey M.J., Williams P.A. Metabolism of toluene and xylenes by Pseudomonas putida mt-2: Evidence for a new function of the TOL plasmid. J. Bacteriol. 1975, 124:7-13.
-
(1975)
J. Bacteriol.
, vol.124
, pp. 7-13
-
-
Worsey, M.J.1
Williams, P.A.2
-
156
-
-
0034032750
-
A biochemical mechanism for nonrandom mutations and evolution
-
Wright B.E. A biochemical mechanism for nonrandom mutations and evolution. J. Bacteriol. 2000, 182:2993-3001.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2993-3001
-
-
Wright, B.E.1
-
157
-
-
24944455200
-
Laboratory-directed protein evolution
-
Yuan L., Kurek I., English J., Keenan R. Laboratory-directed protein evolution. Microbiol. Mol. Biol. Rev. 2005, 69:373-392.
-
(2005)
Microbiol. Mol. Biol. Rev.
, vol.69
, pp. 373-392
-
-
Yuan, L.1
Kurek, I.2
English, J.3
Keenan, R.4
-
158
-
-
0025371323
-
Mutations leading to constitutive expression from the TOL plasmid meta-cleavage pathway operon are located at the C-terminal end of the positive regulator protein XylS
-
Zhou L.M., Timmis K.N., Ramos J.L. Mutations leading to constitutive expression from the TOL plasmid meta-cleavage pathway operon are located at the C-terminal end of the positive regulator protein XylS. J. Bacteriol 1990, 172:3707-3710.
-
(1990)
J. Bacteriol
, vol.172
, pp. 3707-3710
-
-
Zhou, L.M.1
Timmis, K.N.2
Ramos, J.L.3
-
159
-
-
0024427069
-
Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli
-
Zylstra G.J., Gibson D.T. Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli. J. Biol. Chem. 1989, 264:14940-14946.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 14940-14946
-
-
Zylstra, G.J.1
Gibson, D.T.2
-
160
-
-
0024025415
-
Toluene degradation by Pseudomonas putida F1: Genetic organization of the tod operon
-
Zylstra G.J., McCombie W.R., Gibson D.T., Finette B.A. Toluene degradation by Pseudomonas putida F1: Genetic organization of the tod operon. Appl. Environ. Microbiol. 1988, 54:1498-1503.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 1498-1503
-
-
Zylstra, G.J.1
McCombie, W.R.2
Gibson, D.T.3
Finette, B.A.4
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