메뉴 건너뛰기




Volumn 16, Issue 11, 2006, Pages 1819-1825

Characterization of napthalene-degrading pseudomonas species isolated from pollutant-contaminated sites: Oxidative stress during their growth on napthalene

Author keywords

Ascorbate; Biodegradation; Oxidative stress; Salicylate; Transcriptional regulation

Indexed keywords

ASCORBIC ACID; CATALASE; FERROUS ION; GLUCOSE; NAPHTHALENE; SUPEROXIDE; SUPEROXIDE DISMUTASE;

EID: 33845592553     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (29)

References (38)
  • 1
    • 0032487127 scopus 로고    scopus 로고
    • Growth kinetics of Pseudomonas putida G7 on naphthalene and occurrence of naphthalene toxicity during nutrient deprivation
    • Ahn, I. S., W. C. Ghiorse, L. W. Lion, and M. L. Shuler. 1998. Growth kinetics of Pseudomonas putida G7 on naphthalene and occurrence of naphthalene toxicity during nutrient deprivation. Biotechnol. Bioeng. 59: 587-594.
    • (1998) Biotechnol. Bioeng. , vol.59 , pp. 587-594
    • Ahn, I.S.1    Ghiorse, W.C.2    Lion, L.W.3    Shuler, M.L.4
  • 3
    • 41049100518 scopus 로고
    • A spectrophotometric method for measuring the breakdown of hydrogen peroxide by catalase
    • Beers, Jr. R. F. and I. W. Sizer. 1952. A spectrophotometric method for measuring the breakdown of hydrogen peroxide by catalase. J. Biol. Chem. 195: 133-140.
    • (1952) J. Biol. Chem. , vol.195 , pp. 133-140
    • Beers Jr., R.F.1    Sizer, I.W.2
  • 4
    • 0015153416 scopus 로고
    • Superoxide dismutase: Improved assays and an assay applicable to acrylamide gels
    • Beauchamp, C. and I. Fridovich. 1971. Superoxide dismutase: Improved assays and an assay applicable to acrylamide gels. Anal. Biochem. 44: 276-287.
    • (1971) Anal. Biochem. , vol.44 , pp. 276-287
    • Beauchamp, C.1    Fridovich, I.2
  • 5
    • 0032562758 scopus 로고    scopus 로고
    • Growth in iron-enriched medium partially compensates Escherichia coli for the lack of manganese and iron superoxide dismutase
    • Benov, L. and I. Fridovich. 1998. Growth in iron-enriched medium partially compensates Escherichia coli for the lack of manganese and iron superoxide dismutase. J. Biol. Chem. 273: 10313-10316.
    • (1998) J. Biol. Chem. , vol.273 , pp. 10313-10316
    • Benov, L.1    Fridovich, I.2
  • 6
    • 0343485080 scopus 로고    scopus 로고
    • Complete nucleotide sequence and evolutionary implications of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10
    • Bosch, R., E. Garcia-Valdes, and E. R. Moore. 2000. Complete nucleotide sequence and evolutionary implications of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10. Gene 236: 65-74.
    • (2000) Gene , vol.236 , pp. 65-74
    • Bosch, R.1    Garcia-Valdes, E.2    Moore, E.R.3
  • 7
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248-254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 8
    • 0025121119 scopus 로고
    • Monitoring naphthalene catabolism by bioluminescence with nah-lux transcriptional fusions
    • Burlage, R. S., G. S. Sayler, and F. Larimer. 1990. Monitoring naphthalene catabolism by bioluminescence with nah-lux transcriptional fusions. J. Bacteriol. 172: 4749-4757.
    • (1990) J. Bacteriol. , vol.172 , pp. 4749-4757
    • Burlage, R.S.1    Sayler, G.S.2    Larimer, F.3
  • 9
    • 0027937786 scopus 로고
    • Organization and evolution of naphthalene catabolic pathways: Sequence of the DNA encoding 2-hydroxy-chromene-2-carboxylate isomerase and trans-o-hydroxybenzylidenepyruvate hydratase-aldolase from the NAH7 plasmid
    • Eaton, R. W. 1994. Organization and evolution of naphthalene catabolic pathways: Sequence of the DNA encoding 2-hydroxy-chromene-2-carboxylate isomerase and trans-o-hydroxybenzylidenepyruvate hydratase-aldolase from the NAH7 plasmid. J. Bacteriol. 176: 7757-7762.
    • (1994) J. Bacteriol. , vol.176 , pp. 7757-7762
    • Eaton, R.W.1
  • 11
    • 0031753730 scopus 로고    scopus 로고
    • Toxicity assay and naphthalene utilization by natural bacteria selected in marine environments
    • Garcia, E. M., I. G. Siegert, and P. Suarez. 1998. Toxicity assay and naphthalene utilization by natural bacteria selected in marine environments. Bull. Environ. Contain. Toxicol. 61: 370-377.
    • (1998) Bull. Environ. Contain. Toxicol. , vol.61 , pp. 370-377
    • Garcia, E.M.1    Siegert, I.G.2    Suarez, P.3
  • 12
    • 0033963899 scopus 로고    scopus 로고
    • Cytotoxicity of 1,2-epoxynapthalene is correlated with protein binding and in situ glutathione depletion in cytochrome P4501A1 expressing Sf-21 cells
    • Greene, J. F., J. Zheng, D. F. Grant, and B. D. Hammock. 2000. Cytotoxicity of 1,2-epoxynapthalene is correlated with protein binding and in situ glutathione depletion in cytochrome P4501A1 expressing Sf-21 cells. Toxicol. Sci. 53: 352-360.
    • (2000) Toxicol. Sci. , vol.53 , pp. 352-360
    • Greene, J.F.1    Zheng, J.2    Grant, D.F.3    Hammock, B.D.4
  • 13
    • 0242608621 scopus 로고    scopus 로고
    • Pathways of oxidative damage
    • Imlay, J. A. 2003. Pathways of oxidative damage. Annu. Rev. Microbiol. 57: 395-418.
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 395-418
    • Imlay, J.A.1
  • 14
    • 0023192484 scopus 로고
    • Mutagenesis and stress responses induced in Escherichia coli by hydrogen peroxide
    • Imaly, J. A. and S. Linn. 1987. Mutagenesis and stress responses induced in Escherichia coli by hydrogen peroxide. J. Bacteriol. 169: 2967-2976.
    • (1987) J. Bacteriol. , vol.169 , pp. 2967-2976
    • Imaly, J.A.1    Linn, S.2
  • 15
    • 0842345383 scopus 로고    scopus 로고
    • Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment
    • Jeon, C. O., W. Park, W. C. Ghiorese, and E. L. Masden. 2004. Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. Int. J. Sys. Evol. Microbiol. 54: 93-97.
    • (2004) Int. J. Sys. Evol. Microbiol. , vol.54 , pp. 93-97
    • Jeon, C.O.1    Park, W.2    Ghiorese, W.C.3    Masden, E.L.4
  • 16
    • 0141504191 scopus 로고    scopus 로고
    • The naphthalene catabolic (nag) genes of Ralstonia sp. strain U2 are an operon that is regulated by NagR, a LysR-type transcriptional regulator
    • Jones, R. M., B. Britt-Compton, and P. A. Williams. 2003. The naphthalene catabolic (nag) genes of Ralstonia sp. strain U2 are an operon that is regulated by NagR, a LysR-type transcriptional regulator. J. Bacteriol. 185: 5847-5853.
    • (2003) J. Bacteriol. , vol.185 , pp. 5847-5853
    • Jones, R.M.1    Britt-Compton, B.2    Williams, P.A.3
  • 17
    • 0036826502 scopus 로고    scopus 로고
    • Molecular characteristics of Pseudomonas rhodesiae strain KK1 in response to phenanthrene
    • Kahng, H. Y. and K. P. Nam. 2002. Molecular characteristics of Pseudomonas rhodesiae strain KK1 in response to phenanthrene. J. Microbiol. Biotechnol. 12: 729-734.
    • (2002) J. Microbiol. Biotechnol. , vol.12 , pp. 729-734
    • Kahng, H.Y.1    Nam, K.P.2
  • 18
    • 0347264753 scopus 로고    scopus 로고
    • Crystal structure of naphthalene dioxygenase: Side-on binding of dioxygen to iron
    • Karlsson, A., J. V. Parales, R. E. Parales, D. T. Gibson, H. Eklund, and S. Ramaswamy. 2003. Crystal structure of naphthalene dioxygenase: Side-on binding of dioxygen to iron. Science 299: 1039-1042.
    • (2003) Science , vol.299 , pp. 1039-1042
    • Karlsson, A.1    Parales, J.V.2    Parales, R.E.3    Gibson, D.T.4    Eklund, H.5    Ramaswamy, S.6
  • 19
    • 0032845123 scopus 로고    scopus 로고
    • Transcriptional regulation by iron of genes encoding iron- and manganese-superoxide dismutases from Pseudomonas putida
    • Kim, Y. C., C. D. Miller, and A. J. Anderson. 1999. Transcriptional regulation by iron of genes encoding iron- and manganese-superoxide dismutases from Pseudomonas putida. Gene 239: 129-135.
    • (1999) Gene , vol.239 , pp. 129-135
    • Kim, Y.C.1    Miller, C.D.2    Anderson, A.J.3
  • 20
    • 0041358749 scopus 로고    scopus 로고
    • Use of proteomics and physiological characteristics to elucidate ecotoxic effects of methyl tert-butyl ether in Pseudomonas putida KT2440
    • Krayl, M., D. Benndorf, N. Loffhagen, and W. Babel. 2003. Use of proteomics and physiological characteristics to elucidate ecotoxic effects of methyl tert-butyl ether in Pseudomonas putida KT2440. Proteomics 3: 1544-1552.
    • (2003) Proteomics , vol.3 , pp. 1544-1552
    • Krayl, M.1    Benndorf, D.2    Loffhagen, N.3    Babel, W.4
  • 21
    • 24944541498 scopus 로고    scopus 로고
    • Iron starvation leads to oxidative stress in Anabaena sp. strain PCC 7120
    • Latifi, A., R. Jeanjean, S. Lemeille, M. Havaux, and C.-C. Zhang. 2005. Iron starvation leads to oxidative stress in Anabaena sp. strain PCC 7120. J. Bacteriol. 187: 6596-6598.
    • (2005) J. Bacteriol. , vol.187 , pp. 6596-6598
    • Latifi, A.1    Jeanjean, R.2    Lemeille, S.3    Havaux, M.4    Zhang, C.-C.5
  • 22
    • 24644446444 scopus 로고    scopus 로고
    • Effects of salicylate and glucose on biodegradation of phenanthrene by Burkholderia cepacia PM07
    • Lee, D. S., M. W. Lee, S. H. Woo, and J. M. Park. 2005. Effects of salicylate and glucose on biodegradation of phenanthrene by Burkholderia cepacia PM07. J. Microbiol. Biotechnol. 15: 859-865.
    • (2005) J. Microbiol. Biotechnol. , vol.15 , pp. 859-865
    • Lee, D.S.1    Lee, M.W.2    Woo, S.H.3    Park, J.M.4
  • 25
    • 0032827088 scopus 로고    scopus 로고
    • Production of salicylic acid from naphthalene by immobilized Pseudomonas sp. strain NGK1
    • Manohar, S., C. K. Kim, and T. B. Karegouder. 1999. Production of salicylic acid from naphthalene by immobilized Pseudomonas sp. strain NGK1. J. Microbiol. Biotechnol. 9: 482-487.
    • (1999) J. Microbiol. Biotechnol. , vol.9 , pp. 482-487
    • Manohar, S.1    Kim, C.K.2    Karegouder, T.B.3
  • 26
    • 0031935122 scopus 로고    scopus 로고
    • Endogenous superoxide dismutase levels regulate iron-dependent hydroxyl radical formation in Escherichia coli exposed to hydrogen peroxide
    • McConmick, M. L., G. R. Buettner, and B. E. Britigan. 1998. Endogenous superoxide dismutase levels regulate iron-dependent hydroxyl radical formation in Escherichia coli exposed to hydrogen peroxide. J. Bacteriol. 180: 622-625.
    • (1998) J. Bacteriol. , vol.180 , pp. 622-625
    • McConmick, M.L.1    Buettner, G.R.2    Britigan, B.E.3
  • 27
    • 0036667420 scopus 로고    scopus 로고
    • nahR, encoding a LysR-type transcriptional regulator, is highly conserved among naphthalene-degrading bacteria isolated from a coal tar waste-contaminated site and in extracted community DNA
    • Park, W., P. Padmanabhan, S. Padmanabhan, G. J. Zylstra, and E. L. Madsen. 2002. nahR, encoding a LysR-type transcriptional regulator, is highly conserved among naphthalene-degrading bacteria isolated from a coal tar waste-contaminated site and in extracted community DNA. Microbiology 148: 2319-2329.
    • (2002) Microbiology , vol.148 , pp. 2319-2329
    • Park, W.1    Padmanabhan, P.2    Padmanabhan, S.3    Zylstra, G.J.4    Madsen, E.L.5
  • 28
    • 0037031193 scopus 로고    scopus 로고
    • Interaction of NahR, a LysR-type transcriptional regulator, with the α-subunit of RNA polymerase in the naphthalene degrading bacterium, Pseudomonas putida NCIB 9816-4
    • Park, W., C. O. Jeon, and E. L. Madsen. 2002. Interaction of NahR, a LysR-type transcriptional regulator, with the α-subunit of RNA polymerase in the naphthalene degrading bacterium, Pseudomonas putida NCIB 9816-4. FEMS Microbiol. Lett. 213: 59-165.
    • (2002) FEMS Microbiol. Lett. , vol.213 , pp. 59-165
    • Park, W.1    Jeon, C.O.2    Madsen, E.L.3
  • 29
    • 2442593799 scopus 로고    scopus 로고
    • Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: Toxicity of naphthalene and its metabolites Appl
    • Park, W., C. O. Jeon, H. Cadillo, C. DeRito, and E. L. Madsen. 2004. Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: Toxicity of naphthalene and its metabolites. Appl. Microbiol. Biotechnol. 64: 429-435.
    • (2004) Microbiol. Biotechnol. , vol.64 , pp. 429-435
    • Park, W.1    Jeon, C.O.2    Cadillo, H.3    DeRito, C.4    Madsen, E.L.5
  • 31
    • 4444316792 scopus 로고    scopus 로고
    • Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics
    • Santos, P. M., D. Benndorf, and I. Sa-Correia. 2004. Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics. Proteomics 4: 2640-2652.
    • (2004) Proteomics , vol.4 , pp. 2640-2652
    • Santos, P.M.1    Benndorf, D.2    Sa-Correia, I.3
  • 32
    • 0025214239 scopus 로고
    • Use of saturation mutagenesis to localize probable functional domain in the NahR protein, a LysR-type transcriptional activator
    • Schell, M. A., P. H. Brown, and S. Raju. 1990. Use of saturation mutagenesis to localize probable functional domain in the NahR protein, a LysR-type transcriptional activator. J. Biol. Chem. 265: 3844-3850.
    • (1990) J. Biol. Chem. , vol.265 , pp. 3844-3850
    • Schell, M.A.1    Brown, P.H.2    Raju, S.3
  • 34
    • 0037201961 scopus 로고    scopus 로고
    • Naphthalene toxicity and antioxidant nutrients
    • Stohs, S. J., S. Ohia, and D. Bagchi. 2002. Naphthalene toxicity and antioxidant nutrients. Toxicology 180: 97-105.
    • (2002) Toxicology , vol.180 , pp. 97-105
    • Stohs, S.J.1    Ohia, S.2    Bagchi, D.3
  • 35
    • 0032906465 scopus 로고    scopus 로고
    • In situ, real-time catabolic gene expression: Extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater
    • Wilson, M. S., C. Bakermans, and E. L. Madsen. 1999. In situ, real-time catabolic gene expression: Extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater. Appl. Environ. Microbiol. 65: 80-87.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 80-87
    • Wilson, M.S.1    Bakermans, C.2    Madsen, E.L.3
  • 36
    • 0023705037 scopus 로고
    • Genetics of napthalene catabolism in pseudomonads
    • Yen, K. M. and C. M. Serdar. 1988. Genetics of napthalene catabolism in pseudomonads. CRC Crit. Rev. Microbiol. 15: 247-268.
    • (1988) CRC Crit. Rev. Microbiol. , vol.15 , pp. 247-268
    • Yen, K.M.1    Serdar, C.M.2
  • 37
    • 0035167509 scopus 로고    scopus 로고
    • nag Genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism
    • Zhou, N.-Y., S. L. Fuenmayor, and P. A. Williams. 2001. nag Genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism. J. Bacteriol. 183: 700-708.
    • (2001) J. Bacteriol. , vol.183 , pp. 700-708
    • Zhou, N.-Y.1    Fuenmayor, S.L.2    Williams, P.A.3
  • 38
    • 4344678209 scopus 로고    scopus 로고
    • Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4
    • Zylstra, G. J. and J. J. Dennis. 2004. Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4. J. Mol. Biol. 341: 753-768.
    • (2004) J. Mol. Biol. , vol.341 , pp. 753-768
    • Zylstra, G.J.1    Dennis, J.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.