메뉴 건너뛰기




Volumn 66, Issue 2, 2004, Pages 209-216

Characterization in Pseudomonas putida Cg1 of nahR and its role in bacterial survival in soil

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CELL CULTURE; DATA ACQUISITION; NAPHTHALENE; SOILS; TOXICITY;

EID: 11244337594     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-004-1630-6     Document Type: Article
Times cited : (9)

References (43)
  • 1
    • 0032487127 scopus 로고    scopus 로고
    • Growth kinetics of Pseudomonas putida G7 on naphthalene and occurrence of naphthalene toxicity during nutrient deprivation
    • Ahn IS, Ghiorse WC, Lion LW, Shuler ML (1998) Growth kinetics of Pseudomonas putida G7 on naphthalene and occurrence of naphthalene toxicity during nutrient deprivation. Biotechnol Bioeng 59:587-594
    • (1998) Biotechnol Bioeng , vol.59 , pp. 587-594
    • Ahn, I.S.1    Ghiorse, W.C.2    Lion, L.W.3    Shuler, M.L.4
  • 2
    • 0031733597 scopus 로고    scopus 로고
    • Adaptation of Comamonas testosteroni TA441 to utilize phenol: Organization and regulation of the genes involved in phenol degradation
    • Arai H, Akahira S, Ohishi T, Maeda M, Kudo T (1998) Adaptation of Comamonas testosteroni TA441 to utilize phenol: organization and regulation of the genes involved in phenol degradation. Microbiology 144:2895-2903
    • (1998) Microbiology , vol.144 , pp. 2895-2903
    • Arai, H.1    Akahira, S.2    Ohishi, T.3    Maeda, M.4    Kudo, T.5
  • 4
    • 0343485080 scopus 로고    scopus 로고
    • Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10
    • Bosch R, Garcia-Valdes E, Moore ER (2000) Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10. Gene 245:65-74
    • (2000) Gene , vol.245 , pp. 65-74
    • Bosch, R.1    Garcia-Valdes, E.2    Moore, E.R.3
  • 5
    • 0031958208 scopus 로고    scopus 로고
    • Regulation of benzoate degradation in Acinetobacter sp. strain ADP1 by BenM, a LysR-type transcriptional activator
    • Collier LS, Gaines GL III, Neidle EL (1998) Regulation of benzoate degradation in Acinetobacter sp. strain ADP1 by BenM, a LysR-type transcriptional activator. J Bacteriol 180:2493-2501
    • (1998) J Bacteriol , vol.180 , pp. 2493-2501
    • Collier, L.S.1    Gaines III, G.L.2    Neidle, E.L.3
  • 6
    • 0033390088 scopus 로고    scopus 로고
    • Mechanisms of stationary phase mutation: A decade of adaptive mutation
    • Foster PL (1999) Mechanisms of stationary phase mutation: a decade of adaptive mutation. Annu Rev Genet 33:57-88
    • (1999) Annu Rev Genet , vol.33 , pp. 57-88
    • Foster, P.L.1
  • 7
    • 0031753730 scopus 로고    scopus 로고
    • Toxicity assay and naphthalene utilization by natural bacteria selected in marine environments
    • Garcia EM, Siegert IG, Suarez P (1998) Toxicity assay and naphthalene utilization by natural bacteria selected in marine environments. Bull Environ Contam Toxicol 61:370-377
    • (1998) Bull Environ Contam Toxicol , vol.61 , pp. 370-377
    • Garcia, E.M.1    Siegert, I.G.2    Suarez, P.3
  • 8
    • 0037133168 scopus 로고    scopus 로고
    • Amplification-mutagenesis: Evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification
    • Hendrickson H, Slechta ES, Bergthorsson U, Andersson DI, Roth JR (2002) Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification. Proc Natl Acad Sci USA 99:2164-2169
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 2164-2169
    • Hendrickson, H.1    Slechta, E.S.2    Bergthorsson, U.3    Andersson, D.I.4    Roth, J.R.5
  • 9
    • 0027502979 scopus 로고
    • Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria
    • Herrick JB, Madsen EL, Batt CA, Ghiorse WC (1993) Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria. Appl Environ Microbiol 59:687-694
    • (1993) Appl Environ Microbiol , vol.59 , pp. 687-694
    • Herrick, J.B.1    Madsen, E.L.2    Batt, C.A.3    Ghiorse, W.C.4
  • 10
    • 0030977550 scopus 로고    scopus 로고
    • Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal-tar-contaminated field site
    • Herrick JB, Stuart-Keil KG, Ghiorse WC, Madsen EL (1997) Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal-tar-contaminated field site. Appl Environ Microbiol 63:2330-2337
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2330-2337
    • Herrick, J.B.1    Stuart-Keil, K.G.2    Ghiorse, W.C.3    Madsen, E.L.4
  • 11
    • 0033916010 scopus 로고    scopus 로고
    • Naphthalene and donor cell density influence field conjugation of naphthalene catabolism plasmids
    • Hohnstock AM, Stuart-Keil KG, Kull EE, Madsen EL (2000) Naphthalene and donor cell density influence field conjugation of naphthalene catabolism plasmids. Appl Environ Microbiol 66:3088-3092
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3088-3092
    • Hohnstock, A.M.1    Stuart-Keil, K.G.2    Kull, E.E.3    Madsen, E.L.4
  • 12
    • 0025898907 scopus 로고
    • In vivo interactions of the NahR transcriptional activator with its target sequences. Inducer-mediated changes resulting in transcription activation
    • Huang JZ, Schell MA (1991) In vivo interactions of the NahR transcriptional activator with its target sequences. Inducer-mediated changes resulting in transcription activation. J Biol Chem 266:10830-10838
    • (1991) J Biol Chem , vol.266 , pp. 10830-10838
    • Huang, J.Z.1    Schell, M.A.2
  • 13
    • 0141504191 scopus 로고    scopus 로고
    • The naphthalene catabolic (nag) genes of Ralstonia sp. strain U2 are an operon that is regulated by NagR, a LysR-type transcriptional regulator
    • Jones RM, Britt-Compton B, Williams PA (2003) The naphthalene catabolic (nag) genes of Ralstonia sp. strain U2 are an operon that is regulated by NagR, a LysR-type transcriptional regulator. J Bacteriol 185:5847-5853
    • (2003) J Bacteriol , vol.185 , pp. 5847-5853
    • Jones, R.M.1    Britt-Compton, B.2    Williams, P.A.3
  • 14
    • 0030889554 scopus 로고    scopus 로고
    • Suicide plasmids containing promoterless reporter genes can simultaneously disrupt and create fusions to target genes of diverse bacteria
    • Kalogeraki VS, Winans SC (1997) Suicide plasmids containing promoterless reporter genes can simultaneously disrupt and create fusions to target genes of diverse bacteria. Gene 188:69-75
    • (1997) Gene , vol.188 , pp. 69-75
    • Kalogeraki, V.S.1    Winans, S.C.2
  • 15
    • 0027138818 scopus 로고
    • Regulation of the catechol 1,2-dioxygenase-and phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85
    • Kasak L, Horak R, Nurk A, Talvik K, Kivisaar M (1993) Regulation of the catechol 1,2-dioxygenase-and phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85. J Bacteriol 175:8038-8042
    • (1993) J Bacteriol , vol.175 , pp. 8038-8042
    • Kasak, L.1    Horak, R.2    Nurk, A.3    Talvik, K.4    Kivisaar, M.5
  • 16
    • 0345596412 scopus 로고    scopus 로고
    • Impact of inoculation protocols, salinity, and pH on the degradation of polycyclic aromatic hydrocarbons (PAHs) and survival of PAH-degrading bacteria introduced into soil
    • Kastner M, Breuer-Jammali M, Mahro B (1998) Impact of inoculation protocols, salinity, and pH on the degradation of polycyclic aromatic hydrocarbons (PAHs) and survival of PAH-degrading bacteria introduced into soil. Appl Environ Microbiol 64:359-362
    • (1998) Appl Environ Microbiol , vol.64 , pp. 359-362
    • Kastner, M.1    Breuer-Jammali, M.2    Mahro, B.3
  • 17
    • 0038377410 scopus 로고    scopus 로고
    • Expression of the nitroarene dioxygenase genes in Comamonas sp. Strain JS765 and Acidovorax sp. Strain JS42 is induced by multiple aromatic compounds
    • Lessner BJ, Parales RE, Narayan S, Gibson DT (2003) Expression of the nitroarene dioxygenase genes in Comamonas sp. Strain JS765 and Acidovorax sp. Strain JS42 is induced by multiple aromatic compounds. Appl Environ Microbiol 185:3895-3904
    • (2003) Appl Environ Microbiol , vol.185 , pp. 3895-3904
    • Lessner, B.J.1    Parales, R.E.2    Narayan, S.3    Gibson, D.T.4
  • 18
    • 0029852994 scopus 로고    scopus 로고
    • The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP (pJP4)
    • Leveau JH, Meer JR van der (1996) The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP (pJP4). J Bacteriol 178:6824-6932
    • (1996) J Bacteriol , vol.178 , pp. 6824-6932
    • Leveau, J.H.1    Van Der Meer, J.R.2
  • 20
    • 0029881189 scopus 로고    scopus 로고
    • Regulatory noise in prokaryotic promoters: How bacteria learn to respond to novel environmental signals
    • Lorenzo V de, Perez-Martin J (1996) Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals. Mol Microbiol 19:1177-1184
    • (1996) Mol Microbiol , vol.19 , pp. 1177-1184
    • De Lorenzo, V.1    Perez-Martin, J.2
  • 21
    • 0025918927 scopus 로고
    • In situ biodegradation: Microbiological patterns in a contaminated aquifer
    • Madsen EL, Sinclair JL, Ghiorse WC (1991) In situ biodegradation: microbiological patterns in a contaminated aquifer. Science 252:830-833
    • (1991) Science , vol.252 , pp. 830-833
    • Madsen, E.L.1    Sinclair, J.L.2    Ghiorse, W.C.3
  • 22
    • 0035144170 scopus 로고    scopus 로고
    • The adnA transcriptional factor affects persistence and spread of Pseudomonas fluorescens under natural field conditions
    • Marshall B, Robleto EA, Wetzler R, Kulle P, Casaz P, Levy SB (2001) The adnA transcriptional factor affects persistence and spread of Pseudomonas fluorescens under natural field conditions. Appl Environ Microbiol 67:852-857
    • (2001) Appl Environ Microbiol , vol.67 , pp. 852-857
    • Marshall, B.1    Robleto, E.A.2    Wetzler, R.3    Kulle, P.4    Casaz, P.5    Levy, S.B.6
  • 23
    • 0036212003 scopus 로고    scopus 로고
    • Inactivation of the regulatory gene algU or gacA can affect the ability of biocontrol Pseudomonas fluorescens CHA0 to persist as culturable cells in nonsterile soil
    • Mascher F, Moenne-Loccoz Y, Schnider-Keel U, Keel C, Haas D, Defago G (2002) Inactivation of the regulatory gene algU or gacA can affect the ability of biocontrol Pseudomonas fluorescens CHA0 to persist as culturable cells in nonsterile soil. Appl Environ Microbiol 68:2085-2088
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2085-2088
    • Mascher, F.1    Moenne-Loccoz, Y.2    Schnider-Keel, U.3    Keel, C.4    Haas, D.5    Defago, G.6
  • 25
    • 0028876485 scopus 로고
    • Survival of, and induced stress resistance in, carbonstarved Pseudomonas fluorescens cells residing in soil
    • Overbeek LS van, Eberl L, Givskov M, Molin S, Elsas JD van (1995) Survival of, and induced stress resistance in, carbonstarved Pseudomonas fluorescens cells residing in soil. Appl Environ Microbiol 61:4202-4208
    • (1995) Appl Environ Microbiol , vol.61 , pp. 4202-4208
    • Van Overbeek, L.S.1    Eberl, L.2    Givskov, M.3    Molin, S.4    Van Elsas, J.D.5
  • 26
    • 0037031193 scopus 로고    scopus 로고
    • Interaction of NahR, a LysR-type transcriptional regulator, with the alpha subunit of RNA polymerase in the naphthalene degrading bacterium, Pseudomonas putida NCIB 9816-4
    • Park W, Jeon C, Madsen EL (2002a) Interaction of NahR, a LysR-type transcriptional regulator, with the alpha subunit of RNA polymerase in the naphthalene degrading bacterium, Pseudomonas putida NCIB 9816-4. FEMS Microbiol Lett 213:159
    • (2002) FEMS Microbiol Lett , vol.213 , pp. 159
    • Park, W.1    Jeon, C.2    Madsen, E.L.3
  • 27
    • 0036667420 scopus 로고    scopus 로고
    • nahR, encoding a lysR-type transcriptional regulator, is highly conserved among naphthalene degrading bacteria isolated from a coal-tar waste-contaminated site and in extracted community DNA
    • Park W, Padmanabhan P, Padmanabhan S, Zylstra GJ, Madsen EL (2002b) nahR, encoding a lysR-type transcriptional regulator, is highly conserved among naphthalene degrading bacteria isolated from a coal-tar waste-contaminated site and in extracted community DNA. Microbiology 148:2319-2329
    • (2002) Microbiology , vol.148 , pp. 2319-2329
    • Park, W.1    Padmanabhan, P.2    Padmanabhan, S.3    Zylstra, G.J.4    Madsen, E.L.5
  • 28
    • 0037979182 scopus 로고    scopus 로고
    • Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalene-degrading Pseudomonas putida Cg1
    • Park W, Jeon CO, Hohnstock-Ashe AM, Winans SC, Zylstra GJ, Madsen EL (2003) Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalene-degrading Pseudomonas putida Cg1. Appl Environ Microbiol 69:3263-3271
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3263-3271
    • Park, W.1    Jeon, C.O.2    Hohnstock-Ashe, A.M.3    Winans, S.C.4    Zylstra, G.J.5    Madsen, E.L.6
  • 29
    • 2442593799 scopus 로고    scopus 로고
    • Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: Toxicity of naphthalene and its metabolites
    • Park W, Jeon CO, Cadillo H, Derito C, Madsen EL (2004) Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: toxicity of naphthalene and its metabolites. Appl Microbiol Biotechnol 64:429-435
    • (2004) Appl Microbiol Biotechnol , vol.64 , pp. 429-435
    • Park, W.1    Jeon, C.O.2    Cadillo, H.3    Derito, C.4    Madsen, E.L.5
  • 30
    • 0037342721 scopus 로고    scopus 로고
    • Gene plasticity in Acinetobacter: New degradative capabilities acquired by the spontaneous amplification of large chromosomal segments
    • Reams AB, Neidle EL (2003) Gene plasticity in Acinetobacter: new degradative capabilities acquired by the spontaneous amplification of large chromosomal segments. Mol Microbiol 47:1291-1304
    • (2003) Mol Microbiol , vol.47 , pp. 1291-1304
    • Reams, A.B.1    Neidle, E.L.2
  • 31
    • 0022243202 scopus 로고
    • Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product
    • Schell MA (1985) Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product. Gene 36:301-309
    • (1985) Gene , vol.36 , pp. 301-309
    • Schell, M.A.1
  • 32
    • 0027446708 scopus 로고
    • Molecular biology of the LysR family of transcriptional regulators
    • Schell MA (1993) Molecular biology of the LysR family of transcriptional regulators. Annu Rev Microbiol 47:597-626
    • (1993) Annu Rev Microbiol , vol.47 , pp. 597-626
    • Schell, M.A.1
  • 33
    • 0024567178 scopus 로고
    • Evidence that the transcription activator encoded by the Pseudomonas putida nahR gene is evolutionarily related to the transcription activators encoded by the Rhizobium nodD genes
    • Schell MA, Sukordhaman M (1989) Evidence that the transcription activator encoded by the Pseudomonas putida nahR gene is evolutionarily related to the transcription activators encoded by the Rhizobium nodD genes. J Bacteriol 171:1952-1959
    • (1989) J Bacteriol , vol.171 , pp. 1952-1959
    • Schell, M.A.1    Sukordhaman, M.2
  • 34
    • 0022481598 scopus 로고
    • Identification of the nahR gene product and nucleotide sequences required for its activation of the sal operon
    • Schell MA, Wender PE (1986) Identification of the nahR gene product and nucleotide sequences required for its activation of the sal operon. J Bacteriol 166:9-14
    • (1986) J Bacteriol , vol.166 , pp. 9-14
    • Schell, M.A.1    Wender, P.E.2
  • 35
    • 0025214239 scopus 로고
    • Use of saturation mutagenesis to localize probable functional domains in the NahR protein, a LysR-type transcription activator
    • Schell MA, Brown PH, Raju S (1990) Use of saturation mutagenesis to localize probable functional domains in the NahR protein, a LysR-type transcription activator. J Biol Chem 265:3844-3850
    • (1990) J Biol Chem , vol.265 , pp. 3844-3850
    • Schell, M.A.1    Brown, P.H.2    Raju, S.3
  • 36
    • 0024417506 scopus 로고
    • Studies of nucleotide sequence homology between naphthalene-utilizing strains of bacteria
    • Serdar CM, Gibson DT (1989) Studies of nucleotide sequence homology between naphthalene-utilizing strains of bacteria. Biochem Biophys Res Commun 164:772-779
    • (1989) Biochem Biophys Res Commun , vol.164 , pp. 772-779
    • Serdar, C.M.1    Gibson, D.T.2
  • 37
    • 0021027842 scopus 로고
    • A broad host-range mobilization system for in vivo genetic engineering: Transposon mutagenesis in gram-negative bacteria
    • Simon R, Priefer U, Puhler A (1983) A broad host-range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram-negative bacteria. Bio/Technology 1:784-791
    • (1983) Bio/Technology , vol.1 , pp. 784-791
    • Simon, R.1    Priefer, U.2    Puhler, A.3
  • 39
    • 0025739169 scopus 로고
    • Cis-acting ompF mutations that result in OmpR-dependent constitutive expression
    • Slauch JM, Silhavy TJ (1991) Cis-acting ompF mutations that result in OmpR-dependent constitutive expression. J Bacteriol 173:4039-4048
    • (1991) J Bacteriol , vol.173 , pp. 4039-4048
    • Slauch, J.M.1    Silhavy, T.J.2
  • 40
    • 0031710278 scopus 로고    scopus 로고
    • Plasmids responsible for horizontal transfer of naphthalene catabolism genes between bacteria at a coal-tar-contaminated site are homologous to pDTG1 from Pseudomonas putida NCIB 9816-4
    • Stuart-Keil KG, Hohnstock AM, Drees KP, Herrick JB, Madsen EL (1998) Plasmids responsible for horizontal transfer of naphthalene catabolism genes between bacteria at a coal-tar-contaminated site are homologous to pDTG1 from Pseudomonas putida NCIB 9816-4. Appl Environ Microbiol 64:3633-3640
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3633-3640
    • Stuart-Keil, K.G.1    Hohnstock, A.M.2    Drees, K.P.3    Herrick, J.B.4    Madsen, E.L.5
  • 42
    • 0021803921 scopus 로고
    • Regulation of naphthalene catabolic genes of plasmid NAH7
    • Yen KM, Gunsalus IC (1985) Regulation of naphthalene catabolic genes of plasmid NAH7. J Bacteriol 162:1008-1013
    • (1985) J Bacteriol , vol.162 , pp. 1008-1013
    • Yen, K.M.1    Gunsalus, I.C.2
  • 43
    • 0023705037 scopus 로고
    • Genetics of naphthalene catabolism in pseudomonads
    • Yen K-M, Serdar CM (1988) Genetics of naphthalene catabolism in pseudomonads. CRC Crit Rev Microbiol 15:247-268
    • (1988) CRC Crit Rev Microbiol , vol.15 , pp. 247-268
    • Yen, K.-M.1    Serdar, C.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.