메뉴 건너뛰기




Volumn 190, Issue 9, 2008, Pages 3118-3128

Roles of effectors in XylS-dependent transcription activation: Intramolecular domain derepression and DNA binding

Author keywords

[No Author keywords available]

Indexed keywords

3 METHYLBENZOIC ACID; ARAC PROTEIN; BENZOIC ACID; PROTEIN XYLS; RNA POLYMERASE; UNCLASSIFIED DRUG;

EID: 42549109171     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01784-07     Document Type: Article
Times cited : (27)

References (81)
  • 2
    • 0032860246 scopus 로고    scopus 로고
    • Amino acid-DNA contacts by RhaS: An AraC family transcription activator
    • Bhende, P. M., and S. M. Egan. 1999. Amino acid-DNA contacts by RhaS: an AraC family transcription activator. J. Bacteriol. 181:5185- 5192.
    • (1999) J. Bacteriol , vol.181 , pp. 5185-5192
    • Bhende, P.M.1    Egan, S.M.2
  • 3
    • 0033901463 scopus 로고    scopus 로고
    • Genetic evidence that transcription activation by RhaS involves specific amino acid contacts with sigma 70
    • Bhende, P. M., and S. M. Egan. 2000. Genetic evidence that transcription activation by RhaS involves specific amino acid contacts with sigma 70. J. Bacteriol. 182:4959-4969.
    • (2000) J. Bacteriol , vol.182 , pp. 4959-4969
    • Bhende, P.M.1    Egan, S.M.2
  • 4
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
    • (1976) Anal. Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 5
    • 0031026786 scopus 로고    scopus 로고
    • Transcription activation at class II CAP-dependent promoters
    • Busby, S., and R. H. Ebright. 1997. Transcription activation at class II CAP-dependent promoters. Mol. Microbiol. 23:853-859.
    • (1997) Mol. Microbiol , vol.23 , pp. 853-859
    • Busby, S.1    Ebright, R.H.2
  • 7
    • 0026658601 scopus 로고
    • Studies on the binding of the Escherichia coli MelR transcription activator protein to operator sequences at the MelAB promoter
    • Caswell, R., C. Webster, and S. Busby. 1992. Studies on the binding of the Escherichia coli MelR transcription activator protein to operator sequences at the MelAB promoter. Biochem. J. 287:501-508.
    • (1992) Biochem. J , vol.287 , pp. 501-508
    • Caswell, R.1    Webster, C.2    Busby, S.3
  • 8
    • 33744951971 scopus 로고    scopus 로고
    • Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene
    • Domínguez-Cuevas, P., J. E. González-Pastor, S. Marqués, J. L. Ramos, and V. de Lorenzo. 2006. Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene. J. Biol. Chem. 281:11981- 11991.
    • (2006) J. Biol. Chem , vol.281 , pp. 11981-11991
    • Domínguez-Cuevas, P.1    González-Pastor, J.E.2    Marqués, S.3    Ramos, J.L.4    de Lorenzo, V.5
  • 10
    • 0029798411 scopus 로고    scopus 로고
    • In vivo association of protein fragments giving active AraC
    • Eustance, R. J., and R. F. Schleif. 1996. In vivo association of protein fragments giving active AraC. Proteins 25:501-505.
    • (1996) Proteins , vol.25 , pp. 501-505
    • Eustance, R.J.1    Schleif, R.F.2
  • 11
    • 0029063837 scopus 로고
    • Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains
    • Fernández, S., V. de Lorenzo, and J. Pérez- Martín. 1995. Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains. Mol. Microbiol. 16:205-213.
    • (1995) Mol. Microbiol , vol.16 , pp. 205-213
    • Fernández, S.1    de Lorenzo, V.2    Pérez- Martín, J.3
  • 12
    • 0029920970 scopus 로고    scopus 로고
    • 54-dependent tandem promoters according to the compound used for growth
    • 54-dependent tandem promoters according to the compound used for growth. J. Bacteriol. 178:2356-2361.
    • (1996) J. Bacteriol , vol.178 , pp. 2356-2361
    • Gallegos, M.T.1    Marqués, S.2    Ramos, J.L.3
  • 13
    • 0029658258 scopus 로고    scopus 로고
    • S-dependent Pm promoter of the TOL plasmid is the minimum DNA segment required for transcription stimulation by XylS regulators
    • S-dependent Pm promoter of the TOL plasmid is the minimum DNA segment required for transcription stimulation by XylS regulators. J. Bacteriol. 178:6427-6434.
    • (1996) J. Bacteriol , vol.178 , pp. 6427-6434
    • Gallegos, M.T.1    Marqués, S.2    Ramos, J.L.3
  • 15
    • 0037157162 scopus 로고    scopus 로고
    • XylS activator and RNA polymerase binding sites at the Pm promoter overlap
    • González-Pérez, M. M., S. Marqués, P. Domínguez-Cuevas, and J. L. Ramos. 2002. XylS activator and RNA polymerase binding sites at the Pm promoter overlap. FEBS Lett. 519:117-122.
    • (2002) FEBS Lett , vol.519 , pp. 117-122
    • González-Pérez, M.M.1    Marqués, S.2    Domínguez-Cuevas, P.3    Ramos, J.L.4
  • 16
    • 0343330922 scopus 로고    scopus 로고
    • Critical nucleotides in the upstream region of the XylS-dependent TOL meta-cleavage pathway operon promoter as deduced from analysis of mutants
    • González-Pérez, M. M., J. L. Ramos, M. T. Gallegos, and S. Marqués. 1999. Critical nucleotides in the upstream region of the XylS-dependent TOL meta-cleavage pathway operon promoter as deduced from analysis of mutants. J. Biol. Chem. 274:2286-2290.
    • (1999) J. Biol. Chem , vol.274 , pp. 2286-2290
    • González-Pérez, M.M.1    Ramos, J.L.2    Gallegos, M.T.3    Marqués, S.4
  • 17
    • 1542286907 scopus 로고    scopus 로고
    • Cellular XylS levels are a function of transcription of xylS from two independent promoters and the differential efficiency of translation of the two mRNAs
    • González-Pérez, M. M., J. L. Ramos, and S. Marqués. 2004. Cellular XylS levels are a function of transcription of xylS from two independent promoters and the differential efficiency of translation of the two mRNAs. J. Bacteriol. 186:1898-1901.
    • (2004) J. Bacteriol , vol.186 , pp. 1898-1901
    • González-Pérez, M.M.1    Ramos, J.L.2    Marqués, S.3
  • 20
    • 1542616357 scopus 로고    scopus 로고
    • Transcription activation at the Escherichia coli melAB promoter: Interactions of MelR with its DNA target site and with domain 4 of the RNA polymerase sigma subunit
    • Grainger, D. C., C. L. Webster, T. A. Belyaeva, E. I. Hyde, and S. J. Busby. 2004. Transcription activation at the Escherichia coli melAB promoter: interactions of MelR with its DNA target site and with domain 4 of the RNA polymerase sigma subunit. Mol. Microbiol. 51:1297-1309.
    • (2004) Mol. Microbiol , vol.51 , pp. 1297-1309
    • Grainger, D.C.1    Webster, C.L.2    Belyaeva, T.A.3    Hyde, E.I.4    Busby, S.J.5
  • 21
    • 0036291298 scopus 로고    scopus 로고
    • Griffith, K. L., I. M. Shah, T. E. Myers, M. C. O'Neill, and R. E. Wolf, Jr. 2002. Evidence for pre-recruitment as a new mechanism of transcription activation in Escherichia coli: the large excess of SoxS binding sites per cell relative to the number of SoxS molecules per cell. Biochem. Biophys. Res. Commun. 291:979-986.
    • Griffith, K. L., I. M. Shah, T. E. Myers, M. C. O'Neill, and R. E. Wolf, Jr. 2002. Evidence for "pre-recruitment" as a new mechanism of transcription activation in Escherichia coli: the large excess of SoxS binding sites per cell relative to the number of SoxS molecules per cell. Biochem. Biophys. Res. Commun. 291:979-986.
  • 22
    • 1642524483 scopus 로고    scopus 로고
    • Griffith, K. L., I. M. Shah, and R. E. Wolf, Jr. 2004. Proteolytic degradation of Escherichia coli transcription activators SoxS and MarA as the mechanism for reversing the induction of the superoxide (SoxRS) and multiple antibiotic resistance (Mar) regulons. Mol. Microbiol. 51:1801-1816.
    • Griffith, K. L., I. M. Shah, and R. E. Wolf, Jr. 2004. Proteolytic degradation of Escherichia coli transcription activators SoxS and MarA as the mechanism for reversing the induction of the superoxide (SoxRS) and multiple antibiotic resistance (Mar) regulons. Mol. Microbiol. 51:1801-1816.
  • 23
    • 4744338150 scopus 로고    scopus 로고
    • Griffith, K. L., and R. E. Wolf, Jr. 2004. Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS. J. Mol. Biol. 344: 1-10.
    • Griffith, K. L., and R. E. Wolf, Jr. 2004. Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS. J. Mol. Biol. 344: 1-10.
  • 24
    • 0030002587 scopus 로고    scopus 로고
    • Untranslated sequence upstream of MarA in the multiple antibiotic resistance locus of Escherichia coli is related to the effector-binding domain of the XylS transcriptional activator
    • Hachler, H., S. P. Cohen, and S. B. Levy. 1996. Untranslated sequence upstream of MarA in the multiple antibiotic resistance locus of Escherichia coli is related to the effector-binding domain of the XylS transcriptional activator. J. Mol. Evol. 42:409-413.
    • (1996) J. Mol. Evol , vol.42 , pp. 409-413
    • Hachler, H.1    Cohen, S.P.2    Levy, S.B.3
  • 25
    • 0020959710 scopus 로고
    • Studies on transformation of Escherichia coli with Plasmids
    • Hanahan, D. 1983. Studies on transformation of Escherichia coli with Plasmids. J. Mol. Biol. 166:557-580.
    • (1983) J. Mol. Biol , vol.166 , pp. 557-580
    • Hanahan, D.1
  • 26
    • 0031025674 scopus 로고    scopus 로고
    • Chromosomal insertion of the entire Escherichia coli lactose operon, into two strains of Pseudomonas, using a modified mini-Tn5 delivery system
    • Hansen, L. H., S. J. Sorensen, and L. B. Jensen. 1997. Chromosomal insertion of the entire Escherichia coli lactose operon, into two strains of Pseudomonas, using a modified mini-Tn5 delivery system. Gene 186:167-173.
    • (1997) Gene , vol.186 , pp. 167-173
    • Hansen, L.H.1    Sorensen, S.J.2    Jensen, L.B.3
  • 27
    • 0034460874 scopus 로고    scopus 로고
    • Interdependence of activation at rhaSR by cyclic AMP receptor protein, the RNA polymerase alpha subunit C-terminal domain, and RhaR
    • Holcroft, C. C., and S. M. Egan. 2000. Interdependence of activation at rhaSR by cyclic AMP receptor protein, the RNA polymerase alpha subunit C-terminal domain, and RhaR. J. Bacteriol. 182:6774-6782.
    • (2000) J. Bacteriol , vol.182 , pp. 6774-6782
    • Holcroft, C.C.1    Egan, S.M.2
  • 28
    • 0028879546 scopus 로고    scopus 로고
    • Jair, K. W., R. G. Martin, J. L. Rosner, N. Fujita, A. Ishihama, and R. E. Wolf, Jr. 1995. Purification and regulatory properties of MarA protein, a transcriptional activator of Escherichia coli multiple antibiotic and superoxide resistance promoters. J. Bacteriol. 177:7100-7104.
    • Jair, K. W., R. G. Martin, J. L. Rosner, N. Fujita, A. Ishihama, and R. E. Wolf, Jr. 1995. Purification and regulatory properties of MarA protein, a transcriptional activator of Escherichia coli multiple antibiotic and superoxide resistance promoters. J. Bacteriol. 177:7100-7104.
  • 29
    • 0029863748 scopus 로고    scopus 로고
    • Jair, K. W., X. Yu, K. Skarstad, B. Thony, N. Fujita, A. Ishihama, and R. E. Wolf, Jr. 1996. Transcriptional activation of promoters of the superoxide and multiple antibiotic resistance regulons by Rob, a binding protein of the Escherichia coli origin of chromosomal replication. J. Bacteriol. 178:2507-2513.
    • Jair, K. W., X. Yu, K. Skarstad, B. Thony, N. Fujita, A. Ishihama, and R. E. Wolf, Jr. 1996. Transcriptional activation of promoters of the superoxide and multiple antibiotic resistance regulons by Rob, a binding protein of the Escherichia coli origin of chromosomal replication. J. Bacteriol. 178:2507-2513.
  • 30
    • 33646266716 scopus 로고    scopus 로고
    • Mutational analysis of the Escherichia coli melR gene suggests a two-state concerted model to explain transcriptional activation and repression in the melibiose operon
    • Kahramanoglou, C., C. L. Webster, M. S. El-Robh, T. A. Belyaeva, and S. J. Busby. 2006. Mutational analysis of the Escherichia coli melR gene suggests a two-state concerted model to explain transcriptional activation and repression in the melibiose operon. J. Bacteriol. 188:3199-3207.
    • (2006) J. Bacteriol , vol.188 , pp. 3199-3207
    • Kahramanoglou, C.1    Webster, C.L.2    El-Robh, M.S.3    Belyaeva, T.A.4    Busby, S.J.5
  • 31
    • 0029880775 scopus 로고    scopus 로고
    • TOL plasmid transcription factor XylS binds specifically to the Pm operator sequence
    • Kaldalu, N., T. Mandel, and M. Ustav. 1996. TOL plasmid transcription factor XylS binds specifically to the Pm operator sequence. Mol. Microbiol. 20:569-579.
    • (1996) Mol. Microbiol , vol.20 , pp. 569-579
    • Kaldalu, N.1    Mandel, T.2    Ustav, M.3
  • 32
    • 0033967976 scopus 로고    scopus 로고
    • Functional domains of the TOL plasmid transcription factor XylS
    • Kaldalu, N., U. Toots, V. de Lorenzo, and M. Ustav. 2000. Functional domains of the TOL plasmid transcription factor XylS. J. Bacteriol. 182:1118-1126.
    • (2000) J. Bacteriol , vol.182 , pp. 1118-1126
    • Kaldalu, N.1    Toots, U.2    de Lorenzo, V.3    Ustav, M.4
  • 33
    • 0028238964 scopus 로고
    • Genetic evidence that the XylS regulator of the Pseudomonas TOL meta operon controls the Pm promoter through weak DNA-protein interactions
    • Kessler, B., M. Herrero, K. N. Timmis, and V. de Lorenzo. 1994. Genetic evidence that the XylS regulator of the Pseudomonas TOL meta operon controls the Pm promoter through weak DNA-protein interactions. J. Bacteriol. 176:3171-3176.
    • (1994) J. Bacteriol , vol.176 , pp. 3171-3176
    • Kessler, B.1    Herrero, M.2    Timmis, K.N.3    de Lorenzo, V.4
  • 34
    • 0001759947 scopus 로고    scopus 로고
    • Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA
    • Kwon, H. J., M. H. Bennik, B. Demple, and T. Ellenberger. 2000. Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA. Nat. Struct. Biol 7:424-430.
    • (2000) Nat. Struct. Biol , vol.7 , pp. 424-430
    • Kwon, H.J.1    Bennik, M.H.2    Demple, B.3    Ellenberger, T.4
  • 35
    • 0033058086 scopus 로고    scopus 로고
    • 70 subunit of RNA polymerase according to promoter architecture: Identification of the target of Ada activation at the alkA promoter
    • 70 subunit of RNA polymerase according to promoter architecture: identification of the target of Ada activation at the alkA promoter. J. Bacteriol. 181:1524-1529.
    • (1999) J. Bacteriol , vol.181 , pp. 1524-1529
    • Landini, P.1    Busby, S.J.2
  • 36
    • 0030916180 scopus 로고    scopus 로고
    • The RNA polymerase alpha subunit carboxyl-terminal domain is required for both basal and activated transcription from the alkA promoter
    • Landini, P., T. Gaal, W. Ross, and M. R. Volkert. 1997. The RNA polymerase alpha subunit carboxyl-terminal domain is required for both basal and activated transcription from the alkA promoter. J. Biol. Chem. 272:15914-15919.
    • (1997) J. Biol. Chem , vol.272 , pp. 15914-15919
    • Landini, P.1    Gaal, T.2    Ross, W.3    Volkert, M.R.4
  • 37
    • 0025202249 scopus 로고
    • DNA looping and unlooping by AraC protein
    • Lobell, R. B., and R. F. Schleif. 1990. DNA looping and unlooping by AraC protein. Science 250:528-532.
    • (1990) Science , vol.250 , pp. 528-532
    • Lobell, R.B.1    Schleif, R.F.2
  • 38
    • 0034617418 scopus 로고    scopus 로고
    • Mutational analysis of the highly conserved C-terminal residues of the XylS protein, a member of the AraC family of transcriptional regulators
    • Manzanera, M., S. Marqués, and J. L. Ramos. 2000. Mutational analysis of the highly conserved C-terminal residues of the XylS protein, a member of the AraC family of transcriptional regulators. FEBS Lett. 476:312-317.
    • (2000) FEBS Lett , vol.476 , pp. 312-317
    • Manzanera, M.1    Marqués, S.2    Ramos, J.L.3
  • 39
    • 0032586644 scopus 로고    scopus 로고
    • The XylS-dependent Pm promoter is transcribed in vivo by RNA polymerase with sigma 32 or sigma 38 depending on the growth phase
    • Marqués, S., M. Manzanera, M. M. González-Pérez, M. T. Gallegos, and J. L. Ramos. 1999. The XylS-dependent Pm promoter is transcribed in vivo by RNA polymerase with sigma 32 or sigma 38 depending on the growth phase. Mol. Microbiol. 31:1105-1113.
    • (1999) Mol. Microbiol , vol.31 , pp. 1105-1113
    • Marqués, S.1    Manzanera, M.2    González-Pérez, M.M.3    Gallegos, M.T.4    Ramos, J.L.5
  • 40
    • 0027282545 scopus 로고
    • Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways
    • Marqués, S., and J. L. Ramos. 1993. Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways. Mol. Microbiol. 9:923-929.
    • (1993) Mol. Microbiol , vol.9 , pp. 923-929
    • Marqués, S.1    Ramos, J.L.2
  • 41
    • 0030915128 scopus 로고    scopus 로고
    • Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide
    • Marr, M. T., and J. W. Roberts. 1997. Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide. Science 276: 1258-1260.
    • (1997) Science , vol.276 , pp. 1258-1260
    • Marr, M.T.1    Roberts, J.W.2
  • 42
    • 0011064091 scopus 로고
    • The DNA loop model for ara repression: AraC protein occupies the proposed loop sites in vivo and repression-negative mutations lie in these same sites
    • Martin, K., L. Huo, and R. F. Schleif. 1986. The DNA loop model for ara repression: AraC protein occupies the proposed loop sites in vivo and repression-negative mutations lie in these same sites. Proc. Natl. Acad. Sci. USA 83:3654-3658.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 3654-3658
    • Martin, K.1    Huo, L.2    Schleif, R.F.3
  • 43
    • 0035067086 scopus 로고    scopus 로고
    • The AraC transcriptional activators
    • Martin, R. G., and J. L. Rosner. 2001. The AraC transcriptional activators. Curr. Opin. Microbiol. 4:132-137.
    • (2001) Curr. Opin. Microbiol , vol.4 , pp. 132-137
    • Martin, R.G.1    Rosner, J.L.2
  • 44
    • 42549148033 scopus 로고
    • Étude de l'expresion de gènes cataboliques chez
    • Ph.D. thesis. University of Geneva, Geneva, Switzerland
    • Mermod, N. 1986. Étude de l'expresion de gènes cataboliques chez Pseudomonas. Ph.D. thesis. University of Geneva, Geneva, Switzerland.
    • (1986) Pseudomonas
    • Mermod, N.1
  • 45
    • 0023190414 scopus 로고
    • The xylS gene positive regulator of TOL plasmid pWWO: Identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon
    • Mermod, N., J. L. Ramos, A. Bairoch, and K. N. Timmis. 1987. The xylS gene positive regulator of TOL plasmid pWWO: identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon. Mol. Gen. Genet. 207:349-354.
    • (1987) Mol. Gen. Genet , vol.207 , pp. 349-354
    • Mermod, N.1    Ramos, J.L.2    Bairoch, A.3    Timmis, K.N.4
  • 46
    • 0026679759 scopus 로고
    • XylS domain interactions can be deduced from intraallelic dominance in double mutants of Pseudomonas putida
    • Michán, C., B. Kessler, V. de Lorenzo, K. N. Timmis, and J. L. Ramos. 1992. XylS domain interactions can be deduced from intraallelic dominance in double mutants of Pseudomonas putida. Mol. Gen. Genet. 235:406-412.
    • (1992) Mol. Gen. Genet , vol.235 , pp. 406-412
    • Michán, C.1    Kessler, B.2    de Lorenzo, V.3    Timmis, K.N.4    Ramos, J.L.5
  • 47
    • 0026440111 scopus 로고
    • Identification of critical amino-terminal regions of XylS. The positive regulator encoded by the TOL plasmid
    • Michán, C., L. Zhou, M. T. Gallegos, K. N. Timmis, and J. L. Ramos. 1992. Identification of critical amino-terminal regions of XylS. The positive regulator encoded by the TOL plasmid. J. Biol. Chem. 267:22897-22901.
    • (1992) J. Biol. Chem , vol.267 , pp. 22897-22901
    • Michán, C.1    Zhou, L.2    Gallegos, M.T.3    Timmis, K.N.4    Ramos, J.L.5
  • 48
    • 0029068277 scopus 로고
    • The Escherichia coli MelR transcription activator: Production of a stable fragment containing the DNA-binding domain
    • Michán, C. M., S. J. Busby, and E. I. Hyde. 1995. The Escherichia coli MelR transcription activator: production of a stable fragment containing the DNA-binding domain. Nucleic Acids Res. 23:1518-1523.
    • (1995) Nucleic Acids Res , vol.23 , pp. 1518-1523
    • Michán, C.M.1    Busby, S.J.2    Hyde, E.I.3
  • 49
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in molecular genetics
    • Miller, J.1
  • 50
    • 0032949361 scopus 로고    scopus 로고
    • Binding site recognition by Rns, a virulence regulator in the AraC family
    • Munson, G. P., and J. R. Scott. 1999. Binding site recognition by Rns, a virulence regulator in the AraC family. J. Bacteriol. 181:2110-2117.
    • (1999) J. Bacteriol , vol.181 , pp. 2110-2117
    • Munson, G.P.1    Scott, J.R.2
  • 52
    • 0034936966 scopus 로고    scopus 로고
    • Identification of the domains of UreR, an AraC-like transcriptional regulator of the urease gene cluster in Proteus mirabilis
    • Poore, C. A., C. Coker, J. D. Dattelbaum, and H. L. Mobley. 2001. Identification of the domains of UreR, an AraC-like transcriptional regulator of the urease gene cluster in Proteus mirabilis. J. Bacteriol. 183:4526-4535.
    • (2001) J. Bacteriol , vol.183 , pp. 4526-4535
    • Poore, C.A.1    Coker, C.2    Dattelbaum, J.D.3    Mobley, H.L.4
  • 53
    • 27944462141 scopus 로고    scopus 로고
    • Characterization of functional domains of the Vibrio cholerae virulence regulator ToxT
    • Prouty, M. G., C. R. Osorio, and K. E. Klose. 2005. Characterization of functional domains of the Vibrio cholerae virulence regulator ToxT. Mol. Microbiol. 58:1143-1156.
    • (2005) Mol. Microbiol , vol.58 , pp. 1143-1156
    • Prouty, M.G.1    Osorio, C.R.2    Klose, K.E.3
  • 54
    • 0021668178 scopus 로고
    • Positive control of transcription initiation in bacteria
    • Raibaud, O., and M. Schwartz. 1984. Positive control of transcription initiation in bacteria. Annu. Rev. Genet. 18:173-206.
    • (1984) Annu. Rev. Genet , vol.18 , pp. 173-206
    • Raibaud, O.1    Schwartz, M.2
  • 55
    • 0030860391 scopus 로고    scopus 로고
    • Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
    • Ramos, J. L., S. Marqués, and K. N. Timmis. 1997. Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Annu. Rev. Microbiol. 51:341-373.
    • (1997) Annu. Rev. Microbiol , vol.51 , pp. 341-373
    • Ramos, J.L.1    Marqués, S.2    Timmis, K.N.3
  • 56
    • 0023443646 scopus 로고
    • Regulatory circuits controlling transcription of TOL plasmid operon encoding meta-cleavage pathway for degradation of alkylbenzoates by Pseudomonas
    • Ramos, J. L., N. Mermod, and K. N. Timmis. 1987. Regulatory circuits controlling transcription of TOL plasmid operon encoding meta-cleavage pathway for degradation of alkylbenzoates by Pseudomonas. Mol. Microbiol. 1:293-300.
    • (1987) Mol. Microbiol , vol.1 , pp. 293-300
    • Ramos, J.L.1    Mermod, N.2    Timmis, K.N.3
  • 57
    • 0025299804 scopus 로고
    • A family of positive regulators related to the Pseudomonas putida TOL plasmid XylS and the Escherichia coli AraC activators
    • Ramos, J. L., F. Rojo, L. Zhou, and K. N. Timmis. 1990. A family of positive regulators related to the Pseudomonas putida TOL plasmid XylS and the Escherichia coli AraC activators. Nucleic Acids Res. 18:2149-2152.
    • (1990) Nucleic Acids Res , vol.18 , pp. 2149-2152
    • Ramos, J.L.1    Rojo, F.2    Zhou, L.3    Timmis, K.N.4
  • 58
    • 0343419040 scopus 로고
    • Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria
    • Ramos, J. L., A. Stolz, W. Reineke, and K. N. Timmis. 1986. Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria. Proc. Natl. Acad. Sci. USA 83:8467-8471.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 8467-8471
    • Ramos, J.L.1    Stolz, A.2    Reineke, W.3    Timmis, K.N.4
  • 59
    • 0032169864 scopus 로고    scopus 로고
    • A novel DNA-binding motif in MarA: The first structure for an AraC family transcriptional activator
    • Rhee, S., R. G. Martin, J. L. Rosner, and D. R. Davies. 1998. A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator. Proc. Natl. Acad. Sci. USA 95:10413-10418.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 10413-10418
    • Rhee, S.1    Martin, R.G.2    Rosner, J.L.3    Davies, D.R.4
  • 60
    • 0030576519 scopus 로고    scopus 로고
    • Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase
    • Roberts, C. W., and J. W. Roberts. 1996. Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase. Cell 86:495-501.
    • (1996) Cell , vol.86 , pp. 495-501
    • Roberts, C.W.1    Roberts, J.W.2
  • 61
    • 0037628879 scopus 로고    scopus 로고
    • Leucines 193 and 194 at the N-terminal domain of the XylS protein, the positive transcriptional regulator of the TOL meta-cleavage pathway, are involved in dimerization
    • Ruíz, R., S. Marqués, and J. L. Ramos. 2003. Leucines 193 and 194 at the N-terminal domain of the XylS protein, the positive transcriptional regulator of the TOL meta-cleavage pathway, are involved in dimerization. J. Bacteriol. 185:3036-3041.
    • (2003) J. Bacteriol , vol.185 , pp. 3036-3041
    • Ruíz, R.1    Marqués, S.2    Ramos, J.L.3
  • 62
    • 0036510756 scopus 로고    scopus 로고
    • Residues 137 and 153 at the N terminus of the XylS protein influence the effector profile of this transcriptional regulator and the sigma factor used by RNA polymerase to stimulate transcription from its cognate promoter
    • Ruíz, R., and J. L. Ramos. 2002. Residues 137 and 153 at the N terminus of the XylS protein influence the effector profile of this transcriptional regulator and the sigma factor used by RNA polymerase to stimulate transcription from its cognate promoter. J. Biol. Chem. 277:7282-7286.
    • (2002) J. Biol. Chem , vol.277 , pp. 7282-7286
    • Ruíz, R.1    Ramos, J.L.2
  • 63
    • 0035793962 scopus 로고    scopus 로고
    • Interactions of the XylS regulators with the C-terminal domain of the RNA polymerase alpha subunit influence the expression level from the cognate Pm promoter
    • Ruíz, R., J. L. Ramos, and S. Egan. 2001. Interactions of the XylS regulators with the C-terminal domain of the RNA polymerase alpha subunit influence the expression level from the cognate Pm promoter. FEBS Lett. 491:207-211.
    • (2001) FEBS Lett , vol.491 , pp. 207-211
    • Ruíz, R.1    Ramos, J.L.2    Egan, S.3
  • 65
    • 0024474697 scopus 로고
    • KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo
    • Sasse-Dwight, S., and J. D. Gralla. 1989. KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo. J. Biol. Chem. 264:8074-8081.
    • (1989) J. Biol. Chem , vol.264 , pp. 8074-8081
    • Sasse-Dwight, S.1    Gralla, J.D.2
  • 66
    • 4744368729 scopus 로고    scopus 로고
    • Shah, I. M., and R. E. Wolf, Jr. 2004. Novel protein-protein interaction between Escherichia coli SoxS and the DNA binding determinant of the RNA polymerase alpha subunit: SoxS functions as a co-sigma factor and redeploys RNA polymerase from UP-element-containing promoters to SoxS-dependent promoters during oxidative stress. J. Mol. Biol. 343:513-532.
    • Shah, I. M., and R. E. Wolf, Jr. 2004. Novel protein-protein interaction between Escherichia coli SoxS and the DNA binding determinant of the RNA polymerase alpha subunit: SoxS functions as a co-sigma factor and redeploys RNA polymerase from UP-element-containing promoters to SoxS-dependent promoters during oxidative stress. J. Mol. Biol. 343:513-532.
  • 67
    • 0031576253 scopus 로고    scopus 로고
    • The 1.6 Å crystal structure of the AraC sugar-binding and dimerization domain complexed with D-fucose
    • Soisson, S. M., B. MacDougall-Shackleton, R. Schleif, and C. Wolberger. 1997. The 1.6 Å crystal structure of the AraC sugar-binding and dimerization domain complexed with D-fucose. J. Mol. Biol. 273:226-237.
    • (1997) J. Mol. Biol , vol.273 , pp. 226-237
    • Soisson, S.M.1    MacDougall-Shackleton, B.2    Schleif, R.3    Wolberger, C.4
  • 69
    • 0345863934 scopus 로고    scopus 로고
    • The CyberCell Database (CCDB): A comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
    • Sundararaj, S., A. Guo, B. Habibi-Nazhad, M. Rouani, P. Stothard, M. Ellison, and D. S. Wishart. 2004. The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Res. 32:D293-D295.
    • (2004) Nucleic Acids Res , vol.32
    • Sundararaj, S.1    Guo, A.2    Habibi-Nazhad, B.3    Rouani, M.4    Stothard, P.5    Ellison, M.6    Wishart, D.S.7
  • 70
    • 0021919826 scopus 로고
    • A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes
    • Tabor, S., and C. C. Richardson. 1985. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc. Natl. Acad. Sci. USA 82:1074-1078.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 1074-1078
    • Tabor, S.1    Richardson, C.C.2
  • 71
    • 0027669778 scopus 로고
    • Heterogeneity of the principal sigma factor in Escherichia coli: The rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli
    • Tanaka, K., Y. Takayanagi, N. Fujita, A. Ishihama, and H. Takahashi. 1993. Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli. Proc. Natl. Acad. Sci. USA 90:8303.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 8303
    • Tanaka, K.1    Takayanagi, Y.2    Fujita, N.3    Ishihama, A.4    Takahashi, H.5
  • 72
    • 0141960050 scopus 로고    scopus 로고
    • Antibiotic-dependent induction of Pseudomonas putida DOT-T1E TtgABC efflux pump is mediated by the drug binding repressor TtgR
    • Terán, W., A. Felipe, A. Segura, A. Rojas, J. L. Ramos, and M. T. Gallegos. 2003. Antibiotic-dependent induction of Pseudomonas putida DOT-T1E TtgABC efflux pump is mediated by the drug binding repressor TtgR. Antimicrob. Agents Chemother. 47:3067-3072.
    • (2003) Antimicrob. Agents Chemother , vol.47 , pp. 3067-3072
    • Terán, W.1    Felipe, A.2    Segura, A.3    Rojas, A.4    Ramos, J.L.5    Gallegos, M.T.6
  • 73
    • 3042610198 scopus 로고    scopus 로고
    • Biochemical and physiological properties of the DNA binding domain of AraC protein
    • Timmes, A., M. Rodgers, and R. Schleif. 2004. Biochemical and physiological properties of the DNA binding domain of AraC protein. J. Mol. Biol. 340:731-738.
    • (2004) J. Mol. Biol , vol.340 , pp. 731-738
    • Timmes, A.1    Rodgers, M.2    Schleif, R.3
  • 74
    • 0036083835 scopus 로고    scopus 로고
    • AraC-XylS database: A family of positive transcriptional regulators in bacteria
    • Tobes, R., and J. L. Ramos. 2002. AraC-XylS database: a family of positive transcriptional regulators in bacteria. Nucleic Acids Res. 30:318-321.
    • (2002) Nucleic Acids Res , vol.30 , pp. 318-321
    • Tobes, R.1    Ramos, J.L.2
  • 75
    • 0028826048 scopus 로고
    • Synergistic induction of the heat shock response in Escherichia coli by simultaneous treatment with chemical inducers
    • Van Dyk, T. K., T. R. Reed, A. C. Vollmer, and R. A. LaRossa. 1995. Synergistic induction of the heat shock response in Escherichia coli by simultaneous treatment with chemical inducers. J. Bacteriol. 177:6001-6004.
    • (1995) J. Bacteriol , vol.177 , pp. 6001-6004
    • Van Dyk, T.K.1    Reed, T.R.2    Vollmer, A.C.3    LaRossa, R.A.4
  • 76
    • 25144446779 scopus 로고    scopus 로고
    • Inferring the genetic network of m-xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt-2
    • Velazquez, F., V. Parro, and V. de Lorenzo. 2005. Inferring the genetic network of m-xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt-2. Mol. Microbiol. 57:1557-1569.
    • (2005) Mol. Microbiol , vol.57 , pp. 1557-1569
    • Velazquez, F.1    Parro, V.2    de Lorenzo, V.3
  • 77
    • 0034115895 scopus 로고    scopus 로고
    • Repression of the Escherichia coli melR promoter by MelR: Evidence that efficient repression requires the formation of a repression loop
    • Wade, J. T., T. A. Belyaeva, E. I. Hyde, and S. J. Busby. 2000. Repression of the Escherichia coli melR promoter by MelR: evidence that efficient repression requires the formation of a repression loop. Mol. Microbiol. 36:223-229.
    • (2000) Mol. Microbiol , vol.36 , pp. 223-229
    • Wade, J.T.1    Belyaeva, T.A.2    Hyde, E.I.3    Busby, S.J.4
  • 78
    • 4444255499 scopus 로고    scopus 로고
    • Amino acid contacts between sigma 70 domain 4 and the transcription activators RhaS and RhaR
    • Wickstrum, J. R., and S. M. Egan. 2004. Amino acid contacts between sigma 70 domain 4 and the transcription activators RhaS and RhaR. J. Bacteriol. 186:6277-6285.
    • (2004) J. Bacteriol , vol.186 , pp. 6277-6285
    • Wickstrum, J.R.1    Egan, S.M.2
  • 79
    • 34447527767 scopus 로고    scopus 로고
    • Transcription activation by the DNA-binding domain of the AraC family protein RhaS in the absence of its effector-binding domain
    • Wickstrum, J. R., J. M. Skredenske, A. Kolin, D. J. Jin, J. Fang, and S. M. Egan. 2007. Transcription activation by the DNA-binding domain of the AraC family protein RhaS in the absence of its effector-binding domain. J. Bacteriol. 189:4984-4993.
    • (2007) J. Bacteriol , vol.189 , pp. 4984-4993
    • Wickstrum, J.R.1    Skredenske, J.M.2    Kolin, A.3    Jin, D.J.4    Fang, J.5    Egan, S.M.6
  • 80
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3
  • 81
    • 0029928896 scopus 로고    scopus 로고
    • Transcription activation parameters at ara pBAD
    • Zhang, X., T. Reeder, and R. Schleif. 1996. Transcription activation parameters at ara pBAD. J. Mol. Biol. 258:14-24.
    • (1996) J. Mol. Biol , vol.258 , pp. 14-24
    • Zhang, X.1    Reeder, T.2    Schleif, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.