-
1
-
-
0026049422
-
Activation of the Pseudomonas TOL plasmid upper pathway operon
-
Abril MA, Buck M, Ramos JL. 1991. Activation of the Pseudomonas TOL plasmid upper pathway operon. J. Biol. Chem. 266:15832-38
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 15832-15838
-
-
Abril, M.A.1
Buck, M.2
Ramos, J.L.3
-
2
-
-
0024357889
-
Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway
-
Abril MA, Michán C, Timmis KN, Ramos JL. 1989. Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J. Bacteriol. 171:6782-90
-
(1989)
J. Bacteriol.
, vol.171
, pp. 6782-6790
-
-
Abril, M.A.1
Michán, C.2
Timmis, K.N.3
Ramos, J.L.4
-
3
-
-
0027240872
-
Physical organization of the upper pathway operon promoter of the Pseudomonas TOL plasmid. Sequence and positional requirements for XylR-dependent activation of transcription
-
Abril MA, Ramos JL. 1993. Physical organization of the upper pathway operon promoter of the Pseudomonas TOL plasmid. Sequence and positional requirements for XylR-dependent activation of transcription. Mol. Gen. Genet. 239:281-88
-
(1993)
Mol. Gen. Genet.
, vol.239
, pp. 281-288
-
-
Abril, M.A.1
Ramos, J.L.2
-
5
-
-
0025005226
-
The TOL plasmids: Determinants of the catabolism of toluene and xylenes
-
Assinder SJ, Williams PA. 1990. The TOL plasmids: determinants of the catabolism of toluene and xylenes. Adv. Microb. Physiol. 31:1-69
-
(1990)
Adv. Microb. Physiol.
, vol.31
, pp. 1-69
-
-
Assinder, S.J.1
Williams, P.A.2
-
6
-
-
0026581288
-
The prokaryotic enhancer binding protein NtrC has an ATPase activity which is phosphorylation and DNA dependent
-
Austin S, Dixon R. 1992. The prokaryotic enhancer binding protein NtrC has an ATPase activity which is phosphorylation and DNA dependent. EMBO J. 11:2219-28
-
(1992)
EMBO J.
, vol.11
, pp. 2219-2228
-
-
Austin, S.1
Dixon, R.2
-
7
-
-
0017374604
-
Two modes of loss of the TOL function from Pseudomonas putida mt-2
-
Bailey SA, Duggleby C, Worsey MJ, Williams PA, Hardy KG, Broda P. 1977. Two modes of loss of the TOL function from Pseudomonas putida mt-2. Mol. Gen. Genet. 154:203-4
-
(1977)
Mol. Gen. Genet.
, vol.154
, pp. 203-204
-
-
Bailey, S.A.1
Duggleby, C.2
Worsey, M.J.3
Williams, P.A.4
Hardy, K.G.5
Broda, P.6
-
8
-
-
0018095944
-
TOL is a broad-host-range plasmid
-
Benson S, Shapiro J. 1978. TOL is a broad-host-range plasmid. J. Bacteriol. 135:278-80
-
(1978)
J. Bacteriol.
, vol.135
, pp. 278-280
-
-
Benson, S.1
Shapiro, J.2
-
9
-
-
0027958569
-
The isolated catalytic domain of NifA, a bacterial enhancer-binding protein, activates transcription in vitro: Activation is inhibited by NifL
-
Berger D, Narberhaus F, Kustu S. 1994. The isolated catalytic domain of NifA, a bacterial enhancer-binding protein, activates transcription in vitro: Activation is inhibited by NifL. Proc. Natl. Acad. Sci. USA 91:103-7
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 103-107
-
-
Berger, D.1
Narberhaus, F.2
Kustu, S.3
-
10
-
-
0020407693
-
The TOL plasmid is naturally-derepressed for transfer
-
Bradley DE, Williams PA. 1982. The TOL plasmid is naturally-derepressed for transfer. J. Gen. Microbiol. 128:3019-24
-
(1982)
J. Gen. Microbiol.
, vol.128
, pp. 3019-3024
-
-
Bradley, D.E.1
Williams, P.A.2
-
11
-
-
0023425411
-
Missing contact probing of DNA-protein interactions
-
Brunelle A, Schleif RF. 1987. Missing contact probing of DNA-protein interactions. Proc. Natl. Acad. Sci. USA 84:6673-76
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 6673-6676
-
-
Brunelle, A.1
Schleif, R.F.2
-
12
-
-
0024357841
-
Determining residue-base interactions between AraC protein and oral DNA
-
Brunelle A, Schleif RF. 1989. Determining residue-base interactions between AraC protein and oral DNA. J. Mol. Biol. 209:607-22
-
(1989)
J. Mol. Biol.
, vol.209
, pp. 607-622
-
-
Brunelle, A.1
Schleif, R.F.2
-
14
-
-
10344229939
-
Structure and function of the Pseudomonas putida integration host factor
-
Calb R, Davidovitch A, Koby S, Giladi H, Goldenberg D, et al. 1996. Structure and function of the Pseudomonas putida integration host factor. J. Bacteriol. 178:6319-26
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6319-6326
-
-
Calb, R.1
Davidovitch, A.2
Koby, S.3
Giladi, H.4
Goldenberg, D.5
-
16
-
-
0022641868
-
Mutations in the araC regulatory gene of Escherichia coli B/r that affect repressor and activator functions of AraC protein
-
Cass LG, Wilcox G. 1986. Mutations in the araC regulatory gene of Escherichia coli B/r that affect repressor and activator functions of AraC protein. J. Bacteriol. 166:892-900
-
(1986)
J. Bacteriol.
, vol.166
, pp. 892-900
-
-
Cass, L.G.1
Wilcox, G.2
-
17
-
-
0015424751
-
Genetic basis of the biodegradation of salicylate in Pseudomonas
-
Chakrabarty AM. 1972. Genetic basis of the biodegradation of salicylate in Pseudomonas. J. Bacteriol. 112:815-23
-
(1972)
J. Bacteriol.
, vol.112
, pp. 815-823
-
-
Chakrabarty, A.M.1
-
18
-
-
0026003072
-
Control site location and transcriptional regulation in Escherichia coli
-
Collado-Vides J, Magasanik B, Gralla JD. 1991. Control site location and transcriptional regulation in Escherichia coli. Microbiol. Rev. 55:371-94
-
(1991)
Microbiol. Rev.
, vol.55
, pp. 371-394
-
-
Collado-Vides, J.1
Magasanik, B.2
Gralla, J.D.3
-
19
-
-
0028244041
-
Genetic evidence for activation of the positive transcriptional regulator XylR, a member of the NtrC family of regulators, by effector binding
-
Delgado A, Ramos JL. 1994. Genetic evidence for activation of the positive transcriptional regulator XylR, a member of the NtrC family of regulators, by effector binding. J. Biol. Chem. 269:8059-62
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 8059-8062
-
-
Delgado, A.1
Ramos, J.L.2
-
20
-
-
0028912178
-
Single amino acid changes in the signal receptor domain of XylR resulted in mutants that stimulate transcription in the absence of effectors
-
Delgado A, Salto R, Marqués S, Ramos JL. 1995. Single amino acid changes in the signal receptor domain of XylR resulted in mutants that stimulate transcription in the absence of effectors. J. Biol. Chem. 270:5144-50
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 5144-5150
-
-
Delgado, A.1
Salto, R.2
Marqués, S.3
Ramos, J.L.4
-
21
-
-
0027390501
-
Analysis of Pseudomonas gene products using lacN/Ptrp-lac plasmids and transposons that confer conditional phenotypes
-
de Lorenzo V, Eltis L, Kessler B, Timmis KN. 1993. Analysis of Pseudomonas gene products using lacN/Ptrp-lac plasmids and transposons that confer conditional phenotypes. Gene 123:17-24
-
(1993)
Gene
, vol.123
, pp. 17-24
-
-
De Lorenzo, V.1
Eltis, L.2
Kessler, B.3
Timmis, K.N.4
-
23
-
-
0029881189
-
Regulatory noise in prokaryotic promoters: How bacteria learn to respond to novel environmental signals
-
de Lorenzo V, Pérez-Martín J. 1996. Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals. Mol. Microbiol. 19:1177-84
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 1177-1184
-
-
De Lorenzo, V.1
Pérez-Martín, J.2
-
24
-
-
0022558422
-
The xylABC promoter from the Pseudomonas putida TOL plasmid is activated by nitrogen regulatory genes in Escherichia coli
-
Dixon R. 1986. The xylABC promoter from the Pseudomonas putida TOL plasmid is activated by nitrogen regulatory genes in Escherichia coli. Mol. Gen. Genet. 206:129-36
-
(1986)
Mol. Gen. Genet.
, vol.206
, pp. 129-136
-
-
Dixon, R.1
-
25
-
-
0018573595
-
A cleavage map of the TOL plasmid of Pseudomonas putida mt-2
-
Downing RG, Broda PA. 1979. A cleavage map of the TOL plasmid of Pseudomonas putida mt-2. Mol. Gen. Genet. 68:189-91
-
(1979)
Mol. Gen. Genet.
, vol.68
, pp. 189-191
-
-
Downing, R.G.1
Broda, P.A.2
-
26
-
-
0029670234
-
54-dependent transcription of the Pseudomonas putida xylS operon is influenced by the IISNtr protein of the phosphotransferase system in Escherichia coli
-
54-dependent transcription of the Pseudomonas putida xylS operon is influenced by the IISNtr protein of the phosphotransferase system in Escherichia coli. Res. Microbiol. 147:129-32
-
(1996)
Res. Microbiol.
, vol.147
, pp. 129-132
-
-
Du, Y.1
Holtel, A.2
Reizer, J.3
Saier Jr., M.H.4
-
28
-
-
0028226744
-
Inducibility of the TOL catabolic pathway in Pseudomonas putida (pWW0) growing on succinate in continuous culture: Evidence of carbon catabolite repression control
-
Duetz WA, Marqués S, de Jong C, Ramos JL, van Andel JG. 1994. Inducibility of the TOL catabolic pathway in Pseudomonas putida (pWW0) growing on succinate in continuous culture: evidence of carbon catabolite repression control. J. Bacteriol. 176:2354-61
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2354-2361
-
-
Duetz, W.A.1
Marqués, S.2
De Jong, C.3
Ramos, J.L.4
Van Andel, J.G.5
-
29
-
-
0030052826
-
Catabolite repression of the toluene degradation pathway in Pseudomonas putida harboring pWW0 under various conditions of nutrient limitation in chemostat culture
-
Duetz WA, Marqués S, Wind B, Ramos JL, van Andel JG. 1996. Catabolite repression of the toluene degradation pathway in Pseudomonas putida harboring pWW0 under various conditions of nutrient limitation in chemostat culture. Appl. Environ. Microbiol. 62:601-6
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 601-606
-
-
Duetz, W.A.1
Marqués, S.2
Wind, B.3
Ramos, J.L.4
Van Andel, J.G.5
-
30
-
-
0025856969
-
Stability of TOL plasmid pWW0 in Pseudomonas putida mt-2 under nonselective conditions in continuous culture
-
Duetz WA, van Andel JG. 1991. Stability of TOL plasmid pWW0 in Pseudomonas putida mt-2 under nonselective conditions in continuous culture. J. Gen. Microbiol. 137:1369-74
-
(1991)
J. Gen. Microbiol.
, vol.137
, pp. 1369-1374
-
-
Duetz, W.A.1
Van Andel, J.G.2
-
31
-
-
0025863668
-
Mathematical analysis of catabolic function loss in a population of Pseudomonas putida mt-2 during nonlimited growth on benzoate
-
Duetz WA, Winson MK, van Andel JG, Williams PA. 1991. Mathematical analysis of catabolic function loss in a population of Pseudomonas putida mt-2 during nonlimited growth on benzoate. J. Gen. Microbiol. 137:1363-68
-
(1991)
J. Gen. Microbiol.
, vol.137
, pp. 1363-1368
-
-
Duetz, W.A.1
Winson, M.K.2
Van Andel, J.G.3
Williams, P.A.4
-
32
-
-
0015781618
-
Transmissible plasmid coding of early enzymes of naphthalene oxidation in Pseudomonas putida
-
Dunn NW, Gunsalus IC. 1973. Transmissible plasmid coding of early enzymes of naphthalene oxidation in Pseudomonas putida. J. Bacteriol. 114:974-79
-
(1973)
J. Bacteriol.
, vol.114
, pp. 974-979
-
-
Dunn, N.W.1
Gunsalus, I.C.2
-
33
-
-
0025173245
-
How Escherichia coli RNA polymerase can negatively regulate transcription from a constitutive promoter
-
Duval-Valentin G, Reiss C. 1990. How Escherichia coli RNA polymerase can negatively regulate transcription from a constitutive promoter. Mol. Microbiol. 4:1465-75
-
(1990)
Mol. Microbiol.
, vol.4
, pp. 1465-1475
-
-
Duval-Valentin, G.1
Reiss, C.2
-
34
-
-
0028034697
-
Locating and lengthening the interdomain linker in AraC protein
-
Eustance RJ, Bustos SA, Schleif RF. 1994. Locating and lengthening the interdomain linker in AraC protein. J. Mol. Biol. 242:330-38
-
(1994)
J. Mol. Biol.
, vol.242
, pp. 330-338
-
-
Eustance, R.J.1
Bustos, S.A.2
Schleif, R.F.3
-
35
-
-
0029063837
-
Activation of the transcription regulator XylR of Pseudomonas putida by release of repression between functional domains
-
Fernández S, de Lorenzo V, Pérez-Martín J. 1995. Activation of the transcription regulator XylR of Pseudomonas putida by release of repression between functional domains. Mol. Microbiol. 16:205-13
-
(1995)
Mol. Microbiol.
, vol.16
, pp. 205-213
-
-
Fernández, S.1
De Lorenzo, V.2
Pérez-Martín, J.3
-
36
-
-
0005536404
-
Molecular and functional analysis of the TOL plasmid pWW0 from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta-cleavage pathway
-
Franklin FCH, Bagdasarian MM, Timmis KN. 1981. Molecular and functional analysis of the TOL plasmid pWW0 from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta-cleavage pathway. Proc. Natl. Acad. Sci. USA 78:7458-62
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 7458-7462
-
-
Franklin, F.C.H.1
Bagdasarian, M.M.2
Timmis, K.N.3
-
37
-
-
0020567580
-
Localization and functional analysis of transposon mutations in regulatory genes of the TOL catabolic pathway
-
Franklin FCH, Lehrbach PR, Lurz R, Rueckert B, Bagdasarian M, Timmis KN. 1983. Localization and functional analysis of transposon mutations in regulatory genes of the TOL catabolic pathway. J. Bacteriol. 154:676-85
-
(1983)
J. Bacteriol.
, vol.154
, pp. 676-685
-
-
Franklin, F.C.H.1
Lehrbach, P.R.2
Lurz, R.3
Rueckert, B.4
Bagdasarian, M.5
Timmis, K.N.6
-
39
-
-
0029920970
-
54-dependent tandem promoters according to the aromatic compound used for growth
-
54-dependent tandem promoters according to the aromatic compound used for growth. J. Bacteriol. 178:2356-61
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2356-2361
-
-
Gallegos, M.T.1
Marqués, S.2
Ramos, J.L.3
-
40
-
-
0029658258
-
s-dependent Pm promoter of the TOL plasmid is the minimum DNA segment required for transcription stimulation by XylS regulators
-
s-dependent Pm promoter of the TOL plasmid is the minimum DNA segment required for transcription stimulation by XylS regulators. J. Bacteriol. 178:6427-34
-
(1997)
J. Bacteriol.
, vol.178
, pp. 6427-6434
-
-
Gallegos, M.T.1
Marqués, S.2
Ramos, J.L.3
-
42
-
-
0028004389
-
Analysis of DNA bend structure of promoter regulatory regions of xylene-metabolizing genes on the Pseudomonas TOL plasmid
-
Gomada M, Imaishi H, Miura S, Inouye S, Nakazawa T, Nakazawa A. 1994. Analysis of DNA bend structure of promoter regulatory regions of xylene-metabolizing genes on the Pseudomonas TOL plasmid. J. Biochem. 116:1096-104
-
(1994)
J. Biochem.
, vol.116
, pp. 1096-1104
-
-
Gomada, M.1
Imaishi, H.2
Miura, S.3
Inouye, S.4
Nakazawa, T.5
Nakazawa, A.6
-
43
-
-
0026776253
-
Analysis of an upstream regulatory sequence required for activation of the regulatory gene xylS in xylene metabolism directed by the TOL plasmid of Pseudomonas putida
-
Gomada M, Inouye S, Imaishi H, Nakazawa A, Nakazawa T. 1992. Analysis of an upstream regulatory sequence required for activation of the regulatory gene xylS in xylene metabolism directed by the TOL plasmid of Pseudomonas putida. Mol. Gen. Genet. 233:419-26
-
(1992)
Mol. Gen. Genet.
, vol.233
, pp. 419-426
-
-
Gomada, M.1
Inouye, S.2
Imaishi, H.3
Nakazawa, A.4
Nakazawa, T.5
-
44
-
-
0025651190
-
The Tn21 subgroup of bacterial transposable elements
-
Grinsted J, de la Cruz F, Schmitt R. 1990. The Tn21 subgroup of bacterial transposable elements. Plasmid 24:163-89
-
(1990)
Plasmid
, vol.24
, pp. 163-189
-
-
Grinsted, J.1
De La Cruz, F.2
Schmitt, R.3
-
45
-
-
0028286432
-
54-dependent transcriptional activator, may be negatively controlled by a subdomain in the C-terminal end of its two-component receiver module
-
54-dependent transcriptional activator, may be negatively controlled by a subdomain in the C-terminal end of its two-component receiver module. Mol. Microbiol. 13:51-66
-
(1994)
Mol. Microbiol.
, vol.13
, pp. 51-66
-
-
Gu, B.1
Lee, J.H.2
Hoover, T.R.3
Scholl, D.4
Nixon, B.T.5
-
46
-
-
0026634128
-
Activation defects caused by mutations in Escherichia coli rpoA are promoter specific
-
Gussin GN, Olson C, Igarashi K, Ishihama A. 1992. Activation defects caused by mutations in Escherichia coli rpoA are promoter specific. J. Bacteriol. 174:5156-60
-
(1992)
J. Bacteriol.
, vol.174
, pp. 5156-5160
-
-
Gussin, G.N.1
Olson, C.2
Igarashi, K.3
Ishihama, A.4
-
47
-
-
9844228536
-
-
Harayama S. 1995. Gene bank. DDB5 Acc. no. D63341 (NID g 939832)
-
Harayama S. 1995. Gene bank. DDB5 Acc. no. D63341 (NID g 939832).
-
-
-
-
48
-
-
0021124798
-
Transposon mutagenesis analysis of the meta-cleavage pathway operon genes of the TOL plasmid of Pseudomonas putida mt-2
-
Harayama S, Lehrbach PR, Timmis KN. 1984. Transposon mutagenesis analysis of the meta-cleavage pathway operon genes of the TOL plasmid of Pseudomonas putida mt-2. J. Bacteriol. 160:251-55
-
(1984)
J. Bacteriol.
, vol.160
, pp. 251-255
-
-
Harayama, S.1
Lehrbach, P.R.2
Timmis, K.N.3
-
49
-
-
0023141066
-
Role of the divergent branches of the meta-cleavage pathway in degradation of benzoate and substituted benzoates
-
Harayama S, Mermod N, Rekik M, Lehrbach PR, Timmis KN. 1987. Role of the divergent branches of the meta-cleavage pathway in degradation of benzoate and substituted benzoates. J. Bacteriol. 169:558-64
-
(1987)
J. Bacteriol.
, vol.169
, pp. 558-564
-
-
Harayama, S.1
Mermod, N.2
Rekik, M.3
Lehrbach, P.R.4
Timmis, K.N.5
-
50
-
-
0025318026
-
The meta-cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes
-
Harayama S, Rekik M. 1990. The meta-cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes. Mol. Gen. Genet. 221:113-20
-
(1990)
Mol. Gen. Genet.
, vol.221
, pp. 113-120
-
-
Harayama, S.1
Rekik, M.2
-
51
-
-
0024328134
-
Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products
-
Harayama S, Rekik M, Wubbolts M, Rose K, Leppik RA, Timmis KN. 1989. Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products. J. Bacteriol. 171:5048-55
-
(1989)
J. Bacteriol.
, vol.171
, pp. 5048-5055
-
-
Harayama, S.1
Rekik, M.2
Wubbolts, M.3
Rose, K.4
Leppik, R.A.5
Timmis, K.N.6
-
52
-
-
0000494359
-
Catabolism of aromatic hydrocarbons by Pseudomonas
-
ed. D Hopwood, K Chater, New York: Academic
-
Harayama S, Timmis KN. 1989. Catabolism of aromatic hydrocarbons by Pseudomonas. In Genetics of Bacterial Diversity, ed. D Hopwood, K Chater, 151-174. New York: Academic
-
(1989)
Genetics of Bacterial Diversity
, pp. 151-174
-
-
Harayama, S.1
Timmis, K.N.2
-
53
-
-
0025185118
-
Promoter-upstream activator sequences are required for expression of the xylS gene and upper-pathway operon on the Pseudomonas TOL plasmid
-
Holtel A, Abril MA, Marqués S, Timmis KN, Ramos JL. 1990. Promoter-upstream activator sequences are required for expression of the xylS gene and upper-pathway operon on the Pseudomonas TOL plasmid. Mol. Microbiol. 4:1551-56
-
(1990)
Mol. Microbiol.
, vol.4
, pp. 1551-1556
-
-
Holtel, A.1
Abril, M.A.2
Marqués, S.3
Timmis, K.N.4
Ramos, J.L.5
-
54
-
-
0029014389
-
Involvement of IHF protein in expression of the Ps promoter of the Pseudomonas putida TOL plasmid
-
Holtel A, Goldenberg D, Giladi H, Oppenheim AB, Timmis KN. 1995. Involvement of IHF protein in expression of the Ps promoter of the Pseudomonas putida TOL plasmid. J. Bacteriol. 177:3312-15
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3312-3315
-
-
Holtel, A.1
Goldenberg, D.2
Giladi, H.3
Oppenheim, A.B.4
Timmis, K.N.5
-
55
-
-
0028204795
-
Carbon source-dependent inhibition of xyl operon expression of the Pseudomonas putida TOL plasmid
-
Holtel A, Marqués S, Möhler I, Jakubzik U, Timmis KN. 1994. Carbon source-dependent inhibition of xyl operon expression of the Pseudomonas putida TOL plasmid. J. Bacteriol. 176:1773-76
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1773-1776
-
-
Holtel, A.1
Marqués, S.2
Möhler, I.3
Jakubzik, U.4
Timmis, K.N.5
-
56
-
-
0026572610
-
Upstream binding sequences of the XylR activator protein and integration host factor in the xylS gene promoter region of the Pseudomonas TOL plasmid
-
Holtel A, Timmis KN, Ramos JL. 1992. Upstream binding sequences of the XylR activator protein and integration host factor in the xylS gene promoter region of the Pseudomonas TOL plasmid. Nucleic Acids Res. 20:1755-62
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1755-1762
-
-
Holtel, A.1
Timmis, K.N.2
Ramos, J.L.3
-
57
-
-
0029044907
-
54-dependent transcriptional activator Fh1A from Escherichia coli
-
54-dependent transcriptional activator Fh1A from Escherichia coli. J. Bacteriol. 177:2798-803
-
(1995)
J. Bacteriol.
, vol.177
, pp. 2798-2803
-
-
Hopper, S.1
Bock, A.2
-
58
-
-
0025604499
-
Growth-phase-dependent expression of the Pseudomonas putida TOL plasmid pWW0 catabolic genes
-
Hugouvieux-Cotte-Pattat N, Köhler T, Rekik M, Harayama S. 1990. Growth-phase-dependent expression of the Pseudomonas putida TOL plasmid pWW0 catabolic genes. J. Bacteriol. 172:6651-60
-
(1990)
J. Bacteriol.
, vol.172
, pp. 6651-6660
-
-
Hugouvieux-Cotte-Pattat, N.1
Köhler, T.2
Rekik, M.3
Harayama, S.4
-
59
-
-
0021279852
-
Nucleotide sequence surrounding transcription initiation site of xyl/ABC operon on TOL plasmid of Pseudomonas putida
-
Inouye S, Ebina Y, Nakazawa A, Nakazawa T. 1984. Nucleotide sequence surrounding transcription initiation site of xyl/ABC operon on TOL plasmid of Pseudomonas putida. Proc. Natl. Acad. Sci. USA 81:1688-91
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 1688-1691
-
-
Inouye, S.1
Ebina, Y.2
Nakazawa, A.3
Nakazawa, T.4
-
60
-
-
0025675633
-
Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid
-
Inouye S, Gomada M, Sangodar UMX, Nakazawa A, Nakazawa T. 1990. Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid. J. Mol. Biol. 216:251-60
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 251-260
-
-
Inouye, S.1
Gomada, M.2
Sangodar, U.M.X.3
Nakazawa, A.4
Nakazawa, T.5
-
61
-
-
0019844981
-
Molecular cloning of gene xylS of the TOL plasmid: Evidence for positive regulation of the xylDEGF operon by xylS
-
Inouye S, Nakazawa A, Nakazawa T. 1981. Molecular cloning of gene xylS of the TOL plasmid: evidence for positive regulation of the xylDEGF operon by xylS. J. Bacteriol. 148:413-18
-
(1981)
J. Bacteriol.
, vol.148
, pp. 413-418
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
62
-
-
0020520053
-
Molecular cloning of regulatory gene JtWR and operator-promoter regions of the xylABC and xylDEGF operons of the TOL plasmid
-
Inouye S, Nakazawa A, Nakazawa T. 1983. Molecular cloning of regulatory gene JtWR and operator-promoter regions of the xylABC and xylDEGF operons of the TOL plasmid. J. Bacteriol. 155:1192-99
-
(1983)
J. Bacteriol.
, vol.155
, pp. 1192-1199
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
63
-
-
0021198329
-
Nucleotide sequence of the promoter region of the xylDEGF operon on TOL plasmid of Pseudomonas putida
-
Inouye S, Nakazawa A, Nakazawa T. 1984. Nucleotide sequence of the promoter region of the xylDEGF operon on TOL plasmid of Pseudomonas putida. Gene 29:323-30
-
(1984)
Gene
, vol.29
, pp. 323-330
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
64
-
-
0021994728
-
Determination of the transcription initiation site and identification of the protein product of the regulatory gene xylR for xyl operons on the TOL plasmid
-
Inouye S, Nakazawa A, Nakazawa T. 1985. Determination of the transcription initiation site and identification of the protein product of the regulatory gene xylR for xyl operons on the TOL plasmid. J. Bacteriol. 163:863-69
-
(1985)
J. Bacteriol.
, vol.163
, pp. 863-869
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
65
-
-
0022502348
-
Nucleotide sequence of the regulatory gene xylS on the Pseudomonas putida TOL plasmid and identification of the protein product
-
Inouye S, Nakazawa A, Nakazawa T. 1986. Nucleotide sequence of the regulatory gene xylS on the Pseudomonas putida TOL plasmid and identification of the protein product. Gene 44:235-42
-
(1986)
Gene
, vol.44
, pp. 235-242
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
66
-
-
0023394536
-
Expression of the regulatory gene xylS on the TOL plasmid is positively controlled by the xylR gene product
-
Inouye S, Nakazawa A, Nakazawa T. 1987. Expression of the regulatory gene xylS on the TOL plasmid is positively controlled by the xylR gene product. Proc. Natl. Acad. Sci. USA 84:5182-86
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 5182-5186
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
67
-
-
0023393135
-
Overproduction of the xylS gene product and activation of the xylDLEGF operon on the TOL plasmid
-
Inouye S, Nakazawa A, Nakazawa T. 1987. Overproduction of the xylS gene product and activation of the xylDLEGF operon on the TOL plasmid. J. Bacteriol. 169:3587-92
-
(1987)
J. Bacteriol.
, vol.169
, pp. 3587-3592
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
68
-
-
0023945801
-
Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida
-
Inouye S, Nakazawa A, Nakazawa T. 1988. Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida. Gene 66:301-6
-
(1988)
Gene
, vol.66
, pp. 301-306
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
69
-
-
0024842443
-
Cloning and sequence analysis of the ntrA (rpoN) gene of Pseudomonas putida
-
Inouye S, Yamada M, Nakazawa A, Nakazawa T. 1989. Cloning and sequence analysis of the ntrA (rpoN) gene of Pseudomonas putida. Gene 85:145-52
-
(1989)
Gene
, vol.85
, pp. 145-152
-
-
Inouye, S.1
Yamada, M.2
Nakazawa, A.3
Nakazawa, T.4
-
70
-
-
0027262508
-
Protein-protein communication within the transcription apparatus
-
Ishihama A. 1993. Protein-protein communication within the transcription apparatus. J. Bacteriol. 175:2483-89
-
(1993)
J. Bacteriol.
, vol.175
, pp. 2483-2489
-
-
Ishihama, A.1
-
71
-
-
0017841989
-
Transposition of Pseudomonas toluene-degrading genes and expression in Escherichia coli
-
Jacoby GA, Rogers JE, Jacob AE, Hedges RW. 1978 Transposition of Pseudomonas toluene-degrading genes and expression in Escherichia coli. Nature 274:179-80
-
(1978)
Nature
, vol.274
, pp. 179-180
-
-
Jacoby, G.A.1
Rogers, J.E.2
Jacob, A.E.3
Hedges, R.W.4
-
72
-
-
0026718930
-
Characterization of Pseudomonas putida mutants unable to catabolize benzoate: Cloning and characterization of Pseudamonas genes involved in benzoate catabolism and isolation of a chromosomal DNA fragment able to substitute for xylS in activation of the TOL lower-pathway promoter
-
Jeffrey WH, Cuskey SM, Chapman PJ, Resnick S, Olsen RH. 1992. Characterization of Pseudomonas putida mutants unable to catabolize benzoate: cloning and characterization of Pseudamonas genes involved in benzoate catabolism and isolation of a chromosomal DNA fragment able to substitute for xylS in activation of the TOL lower-pathway promoter. J. Bacteriol. 174:4986-94
-
(1992)
J. Bacteriol.
, vol.174
, pp. 4986-4994
-
-
Jeffrey, W.H.1
Cuskey, S.M.2
Chapman, P.J.3
Resnick, S.4
Olsen, R.H.5
-
73
-
-
0029880775
-
TOL plasmid transcription factor XylS binds specifically to the Pm operator sequence
-
Kaldalu N, Mandel T, Ustav M. 1996. TOL plasmid transcription factor XylS binds specifically to the Pm operator sequence. Mol. Microbiol. 20:569-79
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 569-579
-
-
Kaldalu, N.1
Mandel, T.2
Ustav, M.3
-
74
-
-
0022375254
-
Evolutionary conservation of genes coding for meta pathways enzymes within TOL plasmids pWW0 and pWW53
-
Keil H, Keil S, Pickup RW, Williams PA. 1985. Evolutionary conservation of genes coding for meta pathways enzymes within TOL plasmids pWW0 and pWW53. J. Bacteriol. 164:887-95
-
(1985)
J. Bacteriol.
, vol.164
, pp. 887-895
-
-
Keil, H.1
Keil, S.2
Pickup, R.W.3
Williams, P.A.4
-
75
-
-
0026780837
-
A general system to integrate lacZ fusions into the chromosomes of gram-negative eubacteria: Regulation of the Pm promoter of the TOL plasmid studied with all controlling elements in monocopy
-
Kessler B, de Lorenzo V, Timmis KN. 1992. A general system to integrate lacZ fusions into the chromosomes of gram-negative eubacteria: regulation of the Pm promoter of the TOL plasmid studied with all controlling elements in monocopy. Mol. Gen. Genet. 233:293-303
-
(1992)
Mol. Gen. Genet.
, vol.233
, pp. 293-303
-
-
Kessler, B.1
De Lorenzo, V.2
Timmis, K.N.3
-
76
-
-
0027324747
-
Identification of a cis-acting sequence within the Pm promoter of the TOL plasmid which confers XylS-mediated responsiveness to substituted benzoates
-
Kessler B, de Lorenzo V, Timmis KN. 1993. Identification of a cis-acting sequence within the Pm promoter of the TOL plasmid which confers XylS-mediated responsiveness to substituted benzoates. J. Mol. Biol. 230:699-703
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 699-703
-
-
Kessler, B.1
De Lorenzo, V.2
Timmis, K.N.3
-
77
-
-
0028068737
-
Cross talk between catabolic pathways in Pseudomonas putida: XylS-dependent and -independent activation of the TOL meta operon requires the same cis-acting sequences within the Pm promoter
-
Kessler B, Marqués S, Köhler T, Ramos JL, Timmis KN, de Lorenzo V. 1994. Cross talk between catabolic pathways in Pseudomonas putida: XylS-dependent and -independent activation of the TOL meta operon requires the same cis-acting sequences within the Pm promoter. J. Bacteriol. 176:5578-82
-
(1994)
J. Bacteriol.
, vol.176
, pp. 5578-5582
-
-
Kessler, B.1
Marqués, S.2
Köhler, T.3
Ramos, J.L.4
Timmis, K.N.5
De Lorenzo, V.6
-
78
-
-
0024720114
-
Involvement of Pseudomonas putida rpoN sigma factor in regulation of various metabolic functions
-
Köhler T, Harayama S, Ramos JL, Timmis KN. 1989. Involvement of Pseudomonas putida rpoN sigma factor in regulation of various metabolic functions. J. Bacteriol. 171:4326-33
-
(1989)
J. Bacteriol.
, vol.171
, pp. 4326-4333
-
-
Köhler, T.1
Harayama, S.2
Ramos, J.L.3
Timmis, K.N.4
-
79
-
-
0019486545
-
Catabolism of pseudocumene and 3-ethyltoluene by Pseudomonas putida (arvilla) mt-2: Evidence for new functions of the TOL (pWW0) plasmid
-
Kunz DA, Chapman PJ. 1981. Catabolism of pseudocumene and 3-ethyltoluene by Pseudomonas putida (arvilla) mt-2: evidence for new functions of the TOL (pWW0) plasmid. J. Bacteriol. 146:179-91
-
(1981)
J. Bacteriol.
, vol.146
, pp. 179-191
-
-
Kunz, D.A.1
Chapman, P.J.2
-
80
-
-
0024728119
-
Expression of sigma -54 (ntrA)-dependent genes is probably united by a common mechanism
-
Kustu S, Santero E, Keener J, Popham D, Weiss D. 1989. Expression of sigma -54 (ntrA)-dependent genes is probably united by a common mechanism. Microbiol. Rev. 53:367-76
-
(1989)
Microbiol. Rev.
, vol.53
, pp. 367-376
-
-
Kustu, S.1
Santero, E.2
Keener, J.3
Popham, D.4
Weiss, D.5
-
81
-
-
0024443341
-
Studies on the domain structure of the Salmonella typhimurium AraC protein
-
Lauble H, Georgalis Y, Heinemann U. 1989. Studies on the domain structure of the Salmonella typhimurium AraC protein. Eur. J. Biochem. 185:319-25
-
(1989)
Eur. J. Biochem.
, vol.185
, pp. 319-325
-
-
Lauble, H.1
Georgalis, Y.2
Heinemann, U.3
-
82
-
-
0027468370
-
Activity of purified NifA, a transcriptional activator of nitrogen fixation genes
-
Lee HS, Berger DK, Kustu S. 1993. Activity of purified NifA, a transcriptional activator of nitrogen fixation genes. Proc. Natl. Acad. Sci. USA 90:2266-70
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 2266-2270
-
-
Lee, H.S.1
Berger, D.K.2
Kustu, S.3
-
83
-
-
0029174957
-
s in transcription from the positively controlled Pm promoter of the TOL plasmid of Pseudomonas putida
-
s in transcription from the positively controlled Pm promoter of the TOL plasmid of Pseudomonas putida. Mol. Microbiol. 18:851-57
-
(1995)
Mol. Microbiol.
, vol.18
, pp. 851-857
-
-
Marqués, S.1
Gallegos, M.T.2
Ramos, J.L.3
-
84
-
-
0028274784
-
Transcriptional induction kinetics from the promoters of the catabolic pathways of TOL plasmid pWW0 of Pseudomonas putida for metabolism of aromatics
-
Marqués S, Holtel A, Timmis KN, Ramos JL. 1994. Transcriptional induction kinetics from the promoters of the catabolic pathways of TOL plasmid pWW0 of Pseudomonas putida for metabolism of aromatics. J Bacteriol. 176:2517-24
-
(1994)
J Bacteriol.
, vol.176
, pp. 2517-2524
-
-
Marqués, S.1
Holtel, A.2
Timmis, K.N.3
Ramos, J.L.4
-
85
-
-
0027282545
-
Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways
-
Marqués S, Ramos JL. 1993. Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways. Mol. Microbiol. 9:923-29
-
(1993)
Mol. Microbiol.
, vol.9
, pp. 923-929
-
-
Marqués, S.1
Ramos, J.L.2
-
86
-
-
0027367102
-
Analysis of the mRNA structure of the Pseudomonas putida meta-fission pathway operon around the transcription initiation point, the xylTE and the xylFJ regions
-
Marqués S, Ramos JL, Timmis KN. 1993. Analysis of the mRNA structure of the Pseudomonas putida meta-fission pathway operon around the transcription initiation point, the xylTE and the xylFJ regions. Biochim. Biophys. Acta 1216:227-37
-
(1993)
Biochim. Biophys. Acta
, vol.1216
, pp. 227-237
-
-
Marqués, S.1
Ramos, J.L.2
Timmis, K.N.3
-
87
-
-
0025357958
-
Activation of ara operons by a truncated AraC protein does not require inducer
-
Menon KP, Lee NL. 1990. Activation of ara operons by a truncated AraC protein does not require inducer. Proc. Natl. Acad. Sci. USA 87:3708-12
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 3708-3712
-
-
Menon, K.P.1
Lee, N.L.2
-
88
-
-
0021530830
-
Transcription of the TOL plasmid toluate catabolic pathway operon of Pseudomonas putida is determined by a pair of co-ordinately and positively regulated overlapping promoters
-
Mermod N, Lehrbach PR, Reineke W, Timmis KN. 1984. Transcription of the TOL plasmid toluate catabolic pathway operon of Pseudomonas putida is determined by a pair of co-ordinately and positively regulated overlapping promoters. EMBO J. 3:2461-66
-
(1984)
EMBO J.
, vol.3
, pp. 2461-2466
-
-
Mermod, N.1
Lehrbach, P.R.2
Reineke, W.3
Timmis, K.N.4
-
89
-
-
0023190414
-
The XylS gene positive regulator of TOL plasmid pWW0: Identification, sequence analysis and over-producing leading to constitutive expression of meta cleavage operon
-
Mermod N, Ramos JL, Bairoch A, Timmis KN. 1987. The XylS gene positive regulator of TOL plasmid pWW0: identification, sequence analysis and over-producing leading to constitutive expression of meta cleavage operon. Mol. Gen. Genet. 207:349-54
-
(1987)
Mol. Gen. Genet.
, vol.207
, pp. 349-354
-
-
Mermod, N.1
Ramos, J.L.2
Bairoch, A.3
Timmis, K.N.4
-
90
-
-
0019774547
-
Excision of the 40 kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats
-
Meulien P, Downing RG, Broda P. 1981. Excision of the 40 kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats. Mol. Gen. Genet. 184:97-101
-
(1981)
Mol. Gen. Genet.
, vol.184
, pp. 97-101
-
-
Meulien, P.1
Downing, R.G.2
Broda, P.3
-
91
-
-
0026679759
-
XylS domain interactions can be deduced from intraallelic dominance in double mutants
-
Michán C, Kessler B, de Lorenzo V, Timmis KN, Ramos JL. 1992. XylS domain interactions can be deduced from intraallelic dominance in double mutants. Mol. Gen. Genet. 235:406-12
-
(1992)
Mol. Gen. Genet.
, vol.235
, pp. 406-412
-
-
Michán, C.1
Kessler, B.2
De Lorenzo, V.3
Timmis, K.N.4
Ramos, J.L.5
-
92
-
-
0026440111
-
Identification of critical amino-terminal regions of XylS. The positive regulator encoded by the TOL plasmid
-
Michán C, Zhou L, Gallegos MT, Timmis KN, Ramos JL. 1992. Identification of critical amino-terminal regions of XylS. The positive regulator encoded by the TOL plasmid. J. Biol. Chem. 267:22897-901
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 22897-22901
-
-
Michán, C.1
Zhou, L.2
Gallegos, M.T.3
Timmis, K.N.4
Ramos, J.L.5
-
93
-
-
0027340543
-
54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
-
54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J. Bacteriol. 175:6067-74
-
(1993)
J. Bacteriol.
, vol.175
, pp. 6067-6074
-
-
Morett, E.1
Segovia, L.2
-
94
-
-
0029874406
-
Carbon catabolite repression of phenol degradation in Pseudomonas putida is mediated by the inhibition of the activator protein PhlR
-
Müller C, Petruschka L, Cuypers H, Burchhardt G, Herrmann H. 1996. Carbon catabolite repression of phenol degradation in Pseudomonas putida is mediated by the inhibition of the activator protein PhlR. J. Bacteriol. 178:2030-36
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2030-2036
-
-
Müller, C.1
Petruschka, L.2
Cuypers, H.3
Burchhardt, G.4
Herrmann, H.5
-
95
-
-
0020560883
-
Complete nucleotide sequence of the metapyrocatechase gene on the TOL plasmid of Pseudomonas putida mt-2
-
Nakai C, Kagamiyama H, Nozaki M. 1983. Complete nucleotide sequence of the metapyrocatechase gene on the TOL plasmid of Pseudomonas putida mt-2. J. Biol. Chem. 258:2923-28
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 2923-2928
-
-
Nakai, C.1
Kagamiyama, H.2
Nozaki, M.3
-
96
-
-
9844241611
-
TOL plasmid in Pseudomonas aeruginosa PAO: Thermosensitivity of self-maintenance and inhibition of host cell growth
-
Nakazawa T. 1978. TOL plasmid in Pseudomonas aeruginosa PAO: thermosensitivity of self-maintenance and inhibition of host cell growth. J. Bacteriol. 132:1347-58
-
(1978)
J. Bacteriol.
, vol.132
, pp. 1347-1358
-
-
Nakazawa, T.1
-
97
-
-
0015797220
-
Benzoate metabolism in Pseudomonas putida (arvilla) mt-2: Demonstration of two benzoate pathways
-
Nakazawa T, Yokota T. 1973. Benzoate metabolism in Pseudomonas putida (arvilla) mt-2: demonstration of two benzoate pathways. J. Bacteriol. 115:262-67
-
(1973)
J. Bacteriol.
, vol.115
, pp. 262-267
-
-
Nakazawa, T.1
Yokota, T.2
-
98
-
-
0014429573
-
Metapyrocatechase. II. The role of iron and sulfhydryl groups
-
Nozaki M, Ono K, Nakazawa T, Kotani S, Hayaishi O. 1968. Metapyrocatechase. II. The role of iron and sulfhydryl groups. J. Biol. Chem. 243:2682-90
-
(1968)
J. Biol. Chem.
, vol.243
, pp. 2682-2690
-
-
Nozaki, M.1
Ono, K.2
Nakazawa, T.3
Kotani, S.4
Hayaishi, O.5
-
99
-
-
0028100756
-
54-dependent promoter Pu of the upper-TOL operon by intrinsically curved sequences
-
54-dependent promoter Pu of the upper-TOL operon by intrinsically curved sequences. J. Biol. Chem. 269:22657-62
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 22657-22662
-
-
Pérez-Martín, J.1
De Lorenzo, V.2
-
100
-
-
0029073435
-
The amino-terminal domain of the prokaryotic enhancer-binding protein XylR is a specific intramolecular repressor
-
Peréz-Martín J, de Lorenzo V. 1995. The amino-terminal domain of the prokaryotic enhancer-binding protein XylR is a specific intramolecular repressor. Proc. Natl. Acad. Sci. USA 92:9392-96
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 9392-9396
-
-
Peréz-Martín, J.1
De Lorenzo, V.2
-
101
-
-
0028980296
-
54-dependent promoter Ps of the TOL plasmid of Pseudomonas putida requires HU for transcriptional activation in vivo by XylR
-
54-dependent promoter Ps of the TOL plasmid of Pseudomonas putida requires HU for transcriptional activation in vivo by XylR. J. Bacteriol. 177:3758-63
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3758-3763
-
-
Pérez-Martín, J.1
De Lorenzo, V.2
-
102
-
-
0029870669
-
Identification of the repressor subdomain within the signal reception module of the prokaryotic enhancer-binding protein XylR of Pseudomonas putida
-
Peréz-Martín J, de Lorenzo V. 1996. Identification of the repressor subdomain within the signal reception module of the prokaryotic enhancer-binding protein XylR of Pseudomonas putida. J. Biol. Chem. 271:7899-902
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 7899-7902
-
-
Peréz-Martín, J.1
De Lorenzo, V.2
-
104
-
-
0029919623
-
54-dependent transcriptional activator of Pseudomonas putida
-
54-dependent transcriptional activator of Pseudomonas putida. J. Mol. Biol. 258:575-87
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 575-587
-
-
Pérez-Martín, J.1
De Lorenzo, V.2
-
105
-
-
0030602821
-
54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA
-
54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA. Cell 86:331-39
-
(1996)
Cell
, vol.86
, pp. 331-339
-
-
Pérez-Martín, J.1
De Lorenzo, V.2
-
106
-
-
0027308193
-
In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin: A bacterial strategy to expand the substrate specificity of aromatic degradative pathways
-
Polissi A, Harayama S. 1993. In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin: a bacterial strategy to expand the substrate specificity of aromatic degradative pathways. EMBO J. 12:3339-47
-
(1993)
EMBO J.
, vol.12
, pp. 3339-3347
-
-
Polissi, A.1
Harayama, S.2
-
107
-
-
0028566365
-
The behavior of bacteria designed for biodegradation
-
Ramos JL, Díaz E, Dowling D, de Lorenzo V, Molin S, et al. 1994. The behavior of bacteria designed for biodegradation. Bio-Technology 13:35-37
-
(1994)
Bio-Technology
, vol.13
, pp. 35-37
-
-
Ramos, J.L.1
Díaz, E.2
Dowling, D.3
De Lorenzo, V.4
Molin, S.5
-
108
-
-
0002036840
-
Potential of toluene-degrading systems for the construction of hybrid pathways for nitrotoluene metabolism
-
ed. JC Spain, New York: Plenum
-
Ramos JL, Haïdour A, Delgado A, Duque E, Fandila MD, et al. 1995. Potential of toluene-degrading systems for the construction of hybrid pathways for nitrotoluene metabolism. In Biodegradation of Nitroaromatic Compounds, ed. JC Spain, pp. 53-68. New York: Plenum
-
(1995)
Biodegradation of Nitroaromatic Compounds
, pp. 53-68
-
-
Ramos, J.L.1
Haïdour, A.2
Delgado, A.3
Duque, E.4
Fandila, M.D.5
-
109
-
-
0023443646
-
Regulatory circuits controlling transcription of TOL plasmid operon encoding meta-cleavage pathway for degradation of alkylbenzoates by Pseudomonas
-
Ramos JL, Mermod N, Timmis KN. 1987. Regulatory circuits controlling transcription of TOL plasmid operon encoding meta-cleavage pathway for degradation of alkylbenzoates by Pseudomonas. Mol. Microbiol. 1:293-300
-
(1987)
Mol. Microbiol.
, vol.1
, pp. 293-300
-
-
Ramos, J.L.1
Mermod, N.2
Timmis, K.N.3
-
110
-
-
0025158998
-
Signal-regulator interactions: Genetic analysis of the effector binding site of xylS, the benzoate-activated positive regulator of Pseudomonas TOL plasmid meta-cleavage pathway operon
-
Ramos JL, Michán C, Rojo F, Dwyer D, Timmis KN. 1990. Signal-regulator interactions: genetic analysis of the effector binding site of xylS, the benzoate-activated positive regulator of Pseudomonas TOL plasmid meta-cleavage pathway operon. J. Mol. Biol. 211:373-82
-
(1990)
J. Mol. Biol.
, vol.211
, pp. 373-382
-
-
Ramos, J.L.1
Michán, C.2
Rojo, F.3
Dwyer, D.4
Timmis, K.N.5
-
111
-
-
0025299804
-
A family of positive regulators related to the Pseudomonas putida Plasmid XylS and the Escherichia coli AraC activators
-
Ramos JL, Rojo F, Zhou L, Timmis KN. 1990. A family of positive regulators related to the Pseudomonas putida Plasmid XylS and the Escherichia coli AraC activators. Nucleic Acids Res. 18:2149-52
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 2149-2152
-
-
Ramos, J.L.1
Rojo, F.2
Zhou, L.3
Timmis, K.N.4
-
112
-
-
0343419040
-
Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria
-
Ramos JL, Stolz A, Reineke W, Timmis KN. 1986. Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria. Proc. Natl. Acad. Sci. USA 83:8467-71
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 8467-8471
-
-
Ramos, J.L.1
Stolz, A.2
Reineke, W.3
Timmis, K.N.4
-
113
-
-
0023667753
-
Redesigning metabolic routes: Manipulation of TOL plasmid pathway for catabolism of alkylbenzoates
-
Ramos JL, Wasserfallen A, Rose K, Timmis KN. 1987. Redesigning metabolic routes: manipulation of TOL plasmid pathway for catabolism of alkylbenzoates. Science 235:593-96
-
(1987)
Science
, vol.235
, pp. 593-596
-
-
Ramos, J.L.1
Wasserfallen, A.2
Rose, K.3
Timmis, K.N.4
-
114
-
-
0026014234
-
Conjugational transfer of recombinant DNA in cultures and in soils: Host range of Pseudomonas putida TOL plasmids
-
Ramos-González MI, Duque E, Ramos JL. 1991. Conjugational transfer of recombinant DNA in cultures and in soils: host range of Pseudomonas putida TOL plasmids. Appl. Environ. Microbiol. 57:3020-27
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 3020-3027
-
-
Ramos-González, M.I.1
Duque, E.2
Ramos, J.L.3
-
115
-
-
0024990842
-
Purification and characterisation of TOL plasmid-encoded benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase of Pseudomonas putida
-
Shaw JP, Harayama S. 1990. Purification and characterisation of TOL plasmid-encoded benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase of Pseudomonas putida. Eur. J. Biochem. 191:705-14
-
(1990)
Eur. J. Biochem.
, vol.191
, pp. 705-714
-
-
Shaw, J.P.1
Harayama, S.2
-
116
-
-
0024074764
-
Physical and functional mapping of two cointegrate plasmids derived from RP4 and TOL plasmid pDK1
-
Shaw LE, Williams PA. 1988. Physical and functional mapping of two cointegrate plasmids derived from RP4 and TOL plasmid pDK1. J. Gen. Microbiol. 134:2463-74
-
(1988)
J. Gen. Microbiol.
, vol.134
, pp. 2463-2474
-
-
Shaw, L.E.1
Williams, P.A.2
-
117
-
-
0028325759
-
Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600
-
Shingler V, Moore T. 1994. Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600. J. Bacteriol. 176:1555-60
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1555-1560
-
-
Shingler, V.1
Moore, T.2
-
118
-
-
0029132191
-
Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds
-
Shingler V, Pavel H. 1995. Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds. Mol. Microbiol. 17:505-13
-
(1995)
Mol. Microbiol.
, vol.17
, pp. 505-513
-
-
Shingler, V.1
Pavel, H.2
-
119
-
-
0025772124
-
Chromosomal insertion of TOL transposons in Pseudomonas aeruginosa PAO
-
Sinclair MI, Holloway BW. 1991. Chromosomal insertion of TOL transposons in Pseudomonas aeruginosa PAO. J. Gen. Microbiol. 137:1111-20
-
(1991)
J. Gen. Microbiol.
, vol.137
, pp. 1111-1120
-
-
Sinclair, M.I.1
Holloway, B.W.2
-
120
-
-
0023395784
-
Activation of the xylDLEGF promoter of the TOL toluene-xylene degradation pathway by overproduction of the xylS regulatory gene product
-
Spooner RA, Bagdasarian M, Franklin FCH. 1987. Activation of the xylDLEGF promoter of the TOL toluene-xylene degradation pathway by overproduction of the xylS regulatory gene product. J. Bacteriol. 169:3581-86
-
(1987)
J. Bacteriol.
, vol.169
, pp. 3581-3586
-
-
Spooner, R.A.1
Bagdasarian, M.2
Fch, F.3
-
121
-
-
0022624526
-
Genetic, functional and sequence analysis of the xylR and xylS regulatory genes of the TOL plasmid pWW0
-
Spooner RA, Lindsay K, Franklin FCH. 1986. Genetic, functional and sequence analysis of the xylR and xylS regulatory genes of the TOL plasmid pWW0. J. Gen. Microbiol. 132:1347-58
-
(1986)
J. Gen. Microbiol.
, vol.132
, pp. 1347-1358
-
-
Spooner, R.A.1
Lindsay, K.2
Franklin, F.C.H.3
-
122
-
-
0029096994
-
Classification of multihelical DNA-binding domains and application to predict the DBD structures of sigma factor, LysR, OmpR/PhoB, CENP-B, Rap1, and XylS/Ada/AraC
-
Suzuki M, Brenner SE. 1995. Classification of multihelical DNA-binding domains and application to predict the DBD structures of sigma factor, LysR, OmpR/PhoB, CENP-B, Rap1, and XylS/Ada/AraC. FEBS Lett. 372:215-21
-
(1995)
FEBS Lett.
, vol.372
, pp. 215-221
-
-
Suzuki, M.1
Brenner, S.E.2
-
123
-
-
0025963052
-
Primary structure of xylene monooxygenase: Similarities to and differences from the alkane hydroxylation system
-
Suzuki M, Hayakawa T, Shaw JP, Rekik M, Harayama S. 1991. Primary structure of xylene monooxygenase: similarities to and differences from the alkane hydroxylation system. J. Bacteriol. 173:1690-95
-
(1991)
J. Bacteriol.
, vol.173
, pp. 1690-1695
-
-
Suzuki, M.1
Hayakawa, T.2
Shaw, J.P.3
Rekik, M.4
Harayama, S.5
-
124
-
-
0001493114
-
54-dependent Po promoter controlling the Pseudomonas derived (methyl)phenol dmp operon of pVI150
-
54-dependent Po promoter controlling the Pseudomonas derived (methyl)phenol dmp operon of pVI150. J. Bacteriol. 178:3727-35
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3727-3735
-
-
Sze, C.C.1
Moore, T.2
Shingler, V.3
-
126
-
-
0023504678
-
Genetic analysis of a transposon carrying toluene-degrading genes on TOL plasmid pWW0
-
Tsuda M, Iino T. 1987. Genetic analysis of a transposon carrying toluene-degrading genes on TOL plasmid pWW0. Mol. Gen. Genet. 210:270-71
-
(1987)
Mol. Gen. Genet.
, vol.210
, pp. 270-271
-
-
Tsuda, M.1
Iino, T.2
-
127
-
-
0024046404
-
Identification and characterization of Tn4653, a transposon covering the toluene transposon Tn4651 on TOL plasmid pWW0
-
Tsuda M, Iino T. 1988. Identification and characterization of Tn4653, a transposon covering the toluene transposon Tn4651 on TOL plasmid pWW0. Mol. Gen. Genet. 213:72-77
-
(1988)
Mol. Gen. Genet.
, vol.213
, pp. 72-77
-
-
Tsuda, M.1
Iino, T.2
-
128
-
-
0024574036
-
Toluene transposons Tn4651 and Tn4653 are class II transposons
-
Tsuda M, Minegishi KJ, Iino T. 1989. Toluene transposons Tn4651 and Tn4653 are class II transposons. J. Bacteriol. 171:1386-93
-
(1989)
J. Bacteriol.
, vol.171
, pp. 1386-1393
-
-
Tsuda, M.1
Minegishi, K.J.2
Iino, T.3
-
129
-
-
0026070143
-
The phosphorylated form of the enhancer-binding protein NtrC has an ATPase activity that is essential for activation of transcription
-
Weiss D, Batut J, Klose K, Kustu S. 1991. The phosphorylated form of the enhancer-binding protein NtrC has an ATPase activity that is essential for activation of transcription. Cell 67:155-67
-
(1991)
Cell
, vol.67
, pp. 155-167
-
-
Weiss, D.1
Batut, J.2
Klose, K.3
Kustu, S.4
-
130
-
-
0016197816
-
Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: Evidence for the existence of a TOL plasmid
-
Williams PA, Murray K. 1974. Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid. J. Bacteriol. 120:416-23
-
(1974)
J. Bacteriol.
, vol.120
, pp. 416-423
-
-
Williams, P.A.1
Murray, K.2
-
131
-
-
0031024264
-
xylUW, two genes at the start of the upper pathway operon of TOL plasmid pWW0, appear to play no essential part in determining its catabolic phenotype
-
Williams PA, Shaw LM, Pitt CW, Vrecl M. 1996. xylUW, two genes at the start of the upper pathway operon of TOL plasmid pWW0, appear to play no essential part in determining its catabolic phenotype. Microbiology 143:101-07
-
(1996)
Microbiology
, vol.143
, pp. 101-107
-
-
Williams, P.A.1
Shaw, L.M.2
Pitt, C.W.3
Vrecl, M.4
-
132
-
-
0024403543
-
The Q-linker: A class of interdomain sequences found in bacterial multidomain regulatory proteins
-
Wooton JC, Drummond MH. 1989. The Q-linker: a class of interdomain sequences found in bacterial multidomain regulatory proteins. Protein Eng. 2:535-43
-
(1989)
Protein Eng.
, vol.2
, pp. 535-543
-
-
Wooton, J.C.1
Drummond, M.H.2
-
133
-
-
0017888517
-
Regulation of the degradative pathway enzymes coded for by the TOL plasmid (pWW0) from Pseudomonas putida mt-2
-
Worsey MJ, Franklin FCH, Williams PA. 1978. Regulation of the degradative pathway enzymes coded for by the TOL plasmid (pWW0) from Pseudomonas putida mt-2. J. Bacteriol. 134:757-64
-
(1978)
J. Bacteriol.
, vol.134
, pp. 757-764
-
-
Worsey, M.J.1
Franklin, F.C.H.2
Williams, P.A.3
-
134
-
-
0016593935
-
Metabolism of toluene and xylenes by Pseudomimas putida (arvilla) mt-2: Evidence for a new function of the TOL plasmid
-
Worsey MJ, Williams PA. 1975. Metabolism of toluene and xylenes by Pseudomimas putida (arvilla) mt-2: evidence for a new function of the TOL plasmid. J. Bacteriol. 124:7-13
-
(1975)
J. Bacteriol.
, vol.124
, pp. 7-13
-
-
Worsey, M.J.1
Williams, P.A.2
-
135
-
-
0025371323
-
Mutations leading to constitutive expression from the TOL plasmid meta-cleavage pathway operon are located at the C-terminal end of the positive regulator XylS protein
-
Zhou L, Timmis KN, Ramos JL. 1990. Mutations leading to constitutive expression from the TOL plasmid meta-cleavage pathway operon are located at the C-terminal end of the positive regulator XylS protein. J. Bacteriol. 172:3707-10
-
(1990)
J. Bacteriol.
, vol.172
, pp. 3707-3710
-
-
Zhou, L.1
Timmis, K.N.2
Ramos, J.L.3
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