-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. JMol Biol 1990, 215:403-410.
-
(1990)
JMol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, Mcgettigan PA, Mcwilliam H, et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
Mcwilliam, H.6
-
3
-
-
0036500993
-
Systems biology: a brief overview
-
Kitano H. Systems biology: a brief overview. Science 2002, 295:1662-1664.
-
(2002)
Science
, vol.295
, pp. 1662-1664
-
-
Kitano, H.1
-
4
-
-
0032524383
-
Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
-
Wang DG, Fan JB, Siao CJ, Berno A, Young P, et al. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 1998, 280:1077-1082.
-
(1998)
Science
, vol.280
, pp. 1077-1082
-
-
Wang, D.G.1
Fan, J.B.2
Siao, C.J.3
Berno, A.4
Young, P.5
-
5
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
Pollack JR, Perou CM, Alizadeh AA, EisenMB, Pergamenschikov A, et al. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat Genet 1999, 23:41-46.
-
(1999)
Nat Genet
, vol.23
, pp. 41-46
-
-
Pollack, J.R.1
Perou, C.M.2
Alizadeh, A.A.3
Eisen, M.B.4
Pergamenschikov, A.5
-
6
-
-
18144425478
-
A genome-wide scalable SNP genotyping assay using microarray technology
-
Gunderson KL, Steemers FJ, Lee G, Mendoza LG, Chee MS. A genome-wide scalable SNP genotyping assay using microarray technology. Nat Genet 2005, 37:549-554.
-
(2005)
Nat Genet
, vol.37
, pp. 549-554
-
-
Gunderson, K.L.1
Steemers, F.J.2
Lee, G.3
Mendoza, L.G.4
Chee, M.S.5
-
7
-
-
34347339520
-
Methods and strategies for analyzing copy number variation using DNA microarrays
-
Carter NP.Methods and strategies for analyzing copy number variation using DNA microarrays. Nat Genet 2007, (suppl 7):39.
-
(2007)
Nat Genet
, Issue.SUPPL. 7
, pp. 39
-
-
Carter, N.P.1
-
8
-
-
0034910345
-
Navigating gene expression using microarrays-a technology review
-
Schulze A, Downward J. Navigating gene expression using microarrays-a technology review. Nat Cell Biol 2001, 3: E190-E195.
-
(2001)
Nat Cell Biol
, vol.3
-
-
Schulze, A.1
Downward, J.2
-
9
-
-
0036899286
-
From patterns to pathways: gene expression data analysis comes of age
-
Slonim DK. From patterns to pathways: gene expression data analysis comes of age. Nat Genet 2002, 32(suppl):502-508.
-
(2002)
Nat Genet
, vol.32
, Issue.SUPPL.
, pp. 502-508
-
-
Slonim, D.K.1
-
10
-
-
0141920354
-
Comparing protein abundance and mRNA expression levels on a genomic scale
-
Greenbaum D, Colangelo C, Williams K, Gerstein M. Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 2003, 4(9) 117.
-
(2003)
Genome Biol
, vol.4
, Issue.9
, pp. 117
-
-
Greenbaum, D.1
Colangelo, C.2
Williams, K.3
Gerstein, M.4
-
11
-
-
23944483135
-
Post-transcriptional control of gene expression: a genome-wide perspective
-
Mata J, Marguerat S, Bähler J. Post-transcriptional control of gene expression: a genome-wide perspective. Trends Biochem Sci 2005, 30:506-514.
-
(2005)
Trends Biochem Sci
, vol.30
, pp. 506-514
-
-
Mata, J.1
Marguerat, S.2
Bähler, J.3
-
12
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, et al. Global analysis of protein expression in yeast. Nature 2003, 425:737-741
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
-
14
-
-
17644427718
-
Causal protein-signaling networks derived from multiparameter single-cell data
-
Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP. Causal protein-signaling networks derived from multiparameter single-cell data. Science 2005, 308:523-529.
-
(2005)
Science
, vol.308
, pp. 523-529
-
-
Sachs, K.1
Perez, O.2
Pe'er, D.3
Lauffenburger, D.A.4
Nolan, G.P.5
-
15
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci U S A 2001, 98:4569-4574.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
-
16
-
-
0034841844
-
The tandem affinity purification (TAP) method: a general procedure of protein complex purification
-
Puig O, Caspary F, Rigaut G, Rutz B, Bouveret E, et al. The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 2001, 24:218-229.
-
(2001)
Methods
, vol.24
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
-
17
-
-
24144486554
-
Local modeling of global interactome networks
-
Scholtens D, Vidal M, Gentleman R. Local modeling of global interactome networks. Bioinformatics 2005, 21:3548-3557.
-
(2005)
Bioinformatics
, vol.21
, pp. 3548-3557
-
-
Scholtens, D.1
Vidal, M.2
Gentleman, R.3
-
18
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C, Krause R, Snel B, Cornell M, Oliver SG, et al. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002, 417:399-403.
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
-
19
-
-
0036141992
-
Relating wholegenome expression data with protein-protein interactions
-
Jansen R, Greenbaum D, GersteinM. Relating wholegenome expression data with protein-protein interactions. Genome Res 2002, 12:37-46.
-
(2002)
Genome Res
, vol.12
, pp. 37-46
-
-
Jansen, R.1
Greenbaum, D.2
Gerstein, M.3
-
20
-
-
0037727678
-
Metabolic pathways in the post-genome era
-
Papin JA, Price ND, Wiback SJ, Fell DA, Palsson BO. Metabolic pathways in the post-genome era. Trends Biochem Sci 2003, 28:250-258.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 250-258
-
-
Papin, J.A.1
Price, N.D.2
Wiback, S.J.3
Fell, D.A.4
Palsson, B.O.5
-
22
-
-
13444278821
-
Reconstruction of cellular signalling networks and analysis of their properties
-
Papin JA, Hunter T, Palsson BO, Subramaniam S. Reconstruction of cellular signalling networks and analysis of their properties. Nat Rev Mol Cell Biol 2005, 6:99-111.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 99-111
-
-
Papin, J.A.1
Hunter, T.2
Palsson, B.O.3
Subramaniam, S.4
-
23
-
-
0036601150
-
Computational methods for the prediction of protein interactions
-
Valencia A, Pazos F. Computational methods for the prediction of protein interactions. Curr Opin Struct Biol 2002, 12:368-373.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 368-373
-
-
Valencia, A.1
Pazos, F.2
-
24
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles
-
PellegriniM,Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc Natl Acad Sci U S A 1999, 96:4285-4288.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
25
-
-
0042889111
-
Identification of functional links between genes using phylogenetic profiles
-
Wu J, Kasif S, DeLisi C. Identification of functional links between genes using phylogenetic profiles. Bioinformatics 2003, 19:1524-1530.
-
(2003)
Bioinformatics
, vol.19
, pp. 1524-1530
-
-
Wu, J.1
Kasif, S.2
DeLisi, C.3
-
26
-
-
29144461552
-
Predicting protein-protein interaction by searching evolutionary tree automorphism space
-
Jothi R, Kann MG, Przytycka TM. Predicting protein-protein interaction by searching evolutionary tree automorphism space. Bioinformatics 2005, 21(suppl 1):241-250.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
, pp. 241-250
-
-
Jothi, R.1
Kann, M.G.2
Przytycka, T.M.3
-
27
-
-
0035177259
-
Similarity of phylogenetic trees as indicator of protein-protein interaction
-
Pazos F, Valencia A. Similarity of phylogenetic trees as indicator of protein-protein interaction. Protein Eng 2001, 14:609-614.
-
(2001)
Protein Eng
, vol.14
, pp. 609-614
-
-
Pazos, F.1
Valencia, A.2
-
28
-
-
0033736476
-
Genetic network inference: from co-expression clustering to reverse engineering
-
D'Haeseleer P, Liang S, Somogyi R. Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics 2000, 16:707-726.
-
(2000)
Bioinformatics
, vol.16
, pp. 707-726
-
-
D'Haeseleer, P.1
Liang, S.2
Somogyi, R.3
-
29
-
-
0141993704
-
A Genecoexpression network for global discovery of conserved genetic modules
-
Stuart JM, Segal E, Koller D, Kim SK. A Genecoexpression network for global discovery of conserved genetic modules. Science 2003, 302:249-255.
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
32
-
-
9444239213
-
A probabilistic functional network of yeast genes
-
Lee I, Date SV, Adai AT, Marcotte EM. A probabilistic functional network of yeast genes. Science 2004, 306:1555-1558.
-
(2004)
Science
, vol.306
, pp. 1555-1558
-
-
Lee, I.1
Date, S.V.2
Adai, A.T.3
Marcotte, E.M.4
-
33
-
-
36348983834
-
Current progress in network research: toward reference networks for key model organisms
-
Srinivasan BSS, Shah NHH, Flannick JAA, Abeliuk E, Novak AFF, et al. Current progress in network research: toward reference networks for key model organisms. Brief Bioinform 2007, 8(5):318-332.
-
(2007)
Brief Bioinform
, vol.8
, Issue.5
, pp. 318-332
-
-
Srinivasan, B.S.S.1
Shah, N.H.H.2
Flannick, J.A.A.3
Abeliuk, E.4
Novak, A.F.F.5
-
34
-
-
36849004088
-
PathFinder: mining signal transduction pathway segments from protein-protein interaction networks
-
Bebek G, Yang J. PathFinder: mining signal transduction pathway segments from protein-protein interaction networks. BMC Bioinform 2007, 8:335.
-
(2007)
BMC Bioinform
, vol.8
, pp. 335
-
-
Bebek, G.1
Yang, J.2
-
35
-
-
9144257886
-
The Pfam protein families database
-
(Database issue)
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, et al. The Pfam protein families database. Nucleic Acids Res 2004, (Database issue) 32:D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
-
36
-
-
33644550021
-
Structural systems biology: modelling protein interactions
-
Aloy P, Russell RB. Structural systems biology: modelling protein interactions. Nat Rev Mol Cell Biol 2006, 7:188-197.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 188-197
-
-
Aloy, P.1
Russell, R.B.2
-
37
-
-
33644845048
-
Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships
-
Kim Y, Subramaniam S. Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships. Proteins 2006, 62:1115-1124.
-
(2006)
Proteins
, vol.62
, pp. 1115-1124
-
-
Kim, Y.1
Subramaniam, S.2
-
38
-
-
47249152384
-
Protein function prediction based on patterns in biological networks
-
Ki{dotless}raç M, Özsoyoǧlu G. Protein function prediction based on patterns in biological networks. Res Comput Mol Biol 2008, 197-213.
-
(2008)
Res Comput Mol Biol
, pp. 197-213
-
-
Kiraç, M.1
Özsoyoǧlu, G.2
-
39
-
-
0036568319
-
silico two-hybrid system for the selection of physically interacting protein pairs
-
Pazos F, Valencia A. In silico two-hybrid system for the selection of physically interacting protein pairs. Proteins Struct Function Genet 2002, 47:219-227.
-
(2002)
Proteins Struct Function Genet
, vol.47
, pp. 219-227
-
-
Pazos, F.1
Valencia, A.2
-
40
-
-
33745327144
-
An integrated approach to the prediction of domain-domain interactions
-
Lee H, Deng M, Sun F, Chen T. An integrated approach to the prediction of domain-domain interactions. BMC Bioinform 2006, 12:7.
-
(2006)
BMC Bioinform
, vol.12
, pp. 7
-
-
Lee, H.1
Deng, M.2
Sun, F.3
Chen, T.4
-
41
-
-
34548084807
-
Inferring protein domain interactions from databases of interacting proteins
-
Riley R, Lee C, Sabatti C, Eisenberg D. Inferring protein domain interactions from databases of interacting proteins. Genome Biol 2005, 6:R89.
-
(2005)
Genome Biol
, vol.6
-
-
Riley, R.1
Lee, C.2
Sabatti, C.3
Eisenberg, D.4
-
42
-
-
42949163440
-
Interrogating domain-domain interactions with parsimony based approaches
-
Guimaraes KS, Przytycka TM. Interrogating domain-domain interactions with parsimony based approaches. BMC Bioinform 2008, 9:171.
-
(2008)
BMC Bioinform
, vol.9
, pp. 171
-
-
Guimaraes, K.S.1
Przytycka, T.M.2
-
43
-
-
33748333117
-
Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain Interactions mediating protein-protein interactions
-
Jothi R, Cherukuri PF, Tasneem A, Przytycka TM. Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain Interactions mediating protein-protein interactions. J Mol Biol 2006, 362:861-875.
-
(2006)
J Mol Biol
, vol.362
, pp. 861-875
-
-
Jothi, R.1
Cherukuri, P.F.2
Tasneem, A.3
Przytycka, T.M.4
-
44
-
-
34547840240
-
Functional annotation of regulatory pathways
-
Pandey J, Koyutürk M, Kim Y, Szpankowski W, Subramaniam S, et al. Functional annotation of regulatory pathways. Bioinformatics 2007, 23:i377-i386.
-
(2007)
Bioinformatics
, vol.23
-
-
Pandey, J.1
Koyutü rk, M.2
Kim, Y.3
Szpankowski, W.4
Subramaniam, S.5
-
46
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 2002, 298:799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
-
47
-
-
0032616683
-
Identification of genetic networks from a small number of gene expression patterns under the Boolean network model
-
Maui, HI
-
Akutsu T, Miyano S, Kuhara S. Identification of genetic networks from a small number of gene expression patterns under the Boolean network model. Pacific Symposium on Biocomputing Pacific Symposium on Biocomputing, Maui, HI. 1999, 17-28.
-
(1999)
Pacific Symposium on Biocomputing Pacific Symposium on Biocomputing
, pp. 17-28
-
-
Akutsu, T.1
Miyano, S.2
Kuhara, S.3
-
48
-
-
0035999984
-
Binary analysis and optimization-based normalization of gene expression data
-
Shmulevich I, Zhang W. Binary analysis and optimization-based normalization of gene expression data. Bioinformatics 2002, 18:555-565.
-
(2002)
Bioinformatics
, vol.18
, pp. 555-565
-
-
Shmulevich, I.1
Zhang, W.2
-
49
-
-
0038047901
-
On Learning Gene Regulatory Networks Under the Boolean Network Model
-
Lähdesmäki H, Shmulevich I, Yli-Harja O. On Learning Gene Regulatory Networks Under the Boolean Network Model. Machine Learning 2003, 52:147-167.
-
(2003)
Machine Learning
, vol.52
, pp. 147-167
-
-
Lähdesmäki, H.1
Shmulevich, I.2
Yli-Harja, O.3
-
50
-
-
0345504891
-
Crosstalk in plant cell signaling: structure and function of the genetic network
-
Genoud T, Métraux JP. Crosstalk in plant cell signaling: structure and function of the genetic network. Trends Plant Sci 1999, 4:503-507.
-
(1999)
Trends Plant Sci
, vol.4
, pp. 503-507
-
-
Genoud, T.1
Métraux, J.P.2
-
51
-
-
0842288337
-
Inferring cellular networks using probabilistic graphicalmodels
-
Friedman N. Inferring cellular networks using probabilistic graphicalmodels. Science 2004, 303:799-805.
-
(2004)
Science
, vol.303
, pp. 799-805
-
-
Friedman, N.1
-
52
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
Friedman N, Linial M, Nachman I, Pe'er D. Using Bayesian networks to analyze expression data. J Comput Biol 2000, 7:601-620.
-
(2000)
J Comput Biol
, vol.7
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'er, D.4
-
53
-
-
0842309206
-
Inferring gene networks from time series microarray data using dynamic Bayesian networks
-
Kim SY, Imoto S, Miyano S. Inferring gene networks from time series microarray data using dynamic Bayesian networks. Brief Bioinform 2003, 4:228-235.
-
(2003)
Brief Bioinform
, vol.4
, pp. 228-235
-
-
Kim, S.Y.1
Imoto, S.2
Miyano, S.3
-
54
-
-
0036184629
-
Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks
-
Shmulevich I, Dougherty ER, Kim S, Zhang W. Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks. Bioinformatics 2002, 18:261-274.
-
(2002)
Bioinformatics
, vol.18
, pp. 261-274
-
-
Shmulevich, I.1
Dougherty, E.R.2
Kim, S.3
Zhang, W.4
-
55
-
-
0033518234
-
From molecular tomodular cell biology
-
Hartwell LH, Hopfield JJ, Leibler S, Murray AW. From molecular tomodular cell biology. Nature 1999, 402(suppl 6761):C47-52.
-
(1999)
Nature
, vol.402
, Issue.SUPPL. 6761
-
-
Hartwell, L.H.1
Hopfield, J.J.2
Leibler, S.3
Murray, A.W.4
-
56
-
-
1342330546
-
Functional topology in a network of protein interactions
-
Przulj N, Wigle DA, Jurisica I. Functional topology in a network of protein interactions. Bioinformatics 2004, 20:340-348.
-
(2004)
Bioinformatics
, vol.20
, pp. 340-348
-
-
Przulj, N.1
Wigle, D.A.2
Jurisica, I.3
-
57
-
-
33750991092
-
The degree distribution of the generalized duplication model
-
Bebek G, Berenbrink P, Cooper C, Friedetzky T, Nadeau J, et al. The degree distribution of the generalized duplication model. Theor Computer Sci 2006, 369:239-249.
-
(2006)
Theor Computer Sci
, vol.369
, pp. 239-249
-
-
Bebek, G.1
Berenbrink, P.2
Cooper, C.3
Friedetzky, T.4
Nadeau, J.5
-
58
-
-
0037460091
-
Evolving protein interaction networks through gene duplication
-
Pastor-Satorras R, Smith E, Solé RV. Evolving protein interaction networks through gene duplication. J Theor Biol 2003, 222:199-210.
-
(2003)
J Theor Biol
, vol.222
, pp. 199-210
-
-
Pastor-Satorras, R.1
Smith, E.2
Solé, R.V.3
-
59
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
Spirin V, Mirny LA. Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci U S A 2003, 100:12123-12128.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.A.2
-
60
-
-
0034515528
-
A clustering algorithm based on graph connectivity
-
Hartuv E, Shamir R. A clustering algorithm based on graph connectivity. Inform Processing Lett 2000, 76:175-181.
-
(2000)
Inform Processing Lett
, vol.76
, pp. 175-181
-
-
Hartuv, E.1
Shamir, R.2
-
61
-
-
42749099345
-
Subgraphs in random networks
-
Itzkovitz S, Milo R, Kashtan N, Ziv G, Alon U. Subgraphs in random networks. Phys Rev E 2003, 68:026127.
-
(2003)
Phys Rev E
, vol.68
, pp. 026127
-
-
Itzkovitz, S.1
Milo, R.2
Kashtan, N.3
Ziv, G.4
Alon, U.5
-
62
-
-
34547672876
-
Assessing significance of connectivity and conservation in protein interaction networks
-
Koyutürk M, Szpankowski W, Grama A. Assessing significance of connectivity and conservation in protein interaction networks. J Comput Biol 2007, 14:747-764.
-
(2007)
J Comput Biol
, vol.14
, pp. 747-764
-
-
Koyutürk, M.1
Szpankowski, W.2
Grama, A.3
-
63
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
64
-
-
79956150970
-
Improved detection of overrepresentation of gene-ontology annotations with parent-child analysis
-
Grossmann S, Bauer S, Robinson PNN, Vingron M. Improved detection of overrepresentation of gene-ontology annotations with parent-child analysis. Bioinformatics 2007, 24:1650-1651.
-
(2007)
Bioinformatics
, vol.24
, pp. 1650-1651
-
-
Grossmann, S.1
Bauer, S.2
Robinson, P.N.N.3
Vingron, M.4
-
65
-
-
23144442351
-
VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data
-
Hsiao A, Ideker T, Olefsky JM, Subramaniam S. VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. Nucleic Acids Res 2005, 33:W627-W632.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Hsiao, A.1
Ideker, T.2
Olefsky, J.M.3
Subramaniam, S.4
-
66
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader GD, Hogue CW. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinform 2003, 4 2.
-
(2003)
BMC Bioinform
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
67
-
-
0142241336
-
Greedily building protein networks with confidence
-
Bader JS. Greedily building protein networks with confidence. Bioinformatics 2003, 19:1869-1874.
-
(2003)
Bioinformatics
, vol.19
, pp. 1869-1874
-
-
Bader, J.S.1
-
68
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright AJ, Iliopoulos I, Kyrpides NC, Ouzounis CA. Protein interaction maps for complete genomes based on gene fusion events. Nature 1999, 402:86-90.
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
69
-
-
0038074373
-
Topological structure analysis of the protein-protein interaction network in budding yeast
-
Bu D, Zhao Y, Cai L, Xue H, Zhu X, et al. Topological structure analysis of the protein-protein interaction network in budding yeast. Nucl Acids Res 2003, 31:2443-2450.
-
(2003)
Nucl Acids Res
, vol.31
, pp. 2443-2450
-
-
Bu, D.1
Zhao, Y.2
Cai, L.3
Xue, H.4
Zhu, X.5
-
70
-
-
0038014879
-
Coclustering of biological networks and gene expression data
-
Hanisch D, Zien A, Zimmer R, Lengauer T. Coclustering of biological networks and gene expression data. Bioinformatics. 2002, 18(suppl 1):S145-S154.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Hanisch, D.1
Zien, A.2
Zimmer, R.3
Lengauer, T.4
-
71
-
-
33645732240
-
Modeling cellular machinery through biological network comparison
-
Sharan R, Ideker T. Modeling cellular machinery through biological network comparison. Nat Biotechnol 2006, 24:427-433.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 427-433
-
-
Sharan, R.1
Ideker, T.2
-
73
-
-
0141593601
-
Conserved pathways within bacteria and yeast as revealed by global protein network alignment
-
Kelley BP, Sharan R, Karp RM, Sittler T, Root DE, et al. Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc Natl Acad Sci U S A 2003, 100:11394-11399.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 11394-11399
-
-
Kelley, B.P.1
Sharan, R.2
Karp, R.M.3
Sittler, T.4
Root, D.E.5
-
74
-
-
23844447959
-
Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
-
Sharan R, Ideker T, Kelley B, Shamir R, Karp RM. Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. J Comput Biol 2005, 12:835-846.
-
(2005)
J Comput Biol
, vol.12
, pp. 835-846
-
-
Sharan, R.1
Ideker, T.2
Kelley, B.3
Shamir, R.4
Karp, R.M.5
-
75
-
-
33748257786
-
Graemlin: general and robust alignment of multiple large interaction networks
-
Flannick J, Novak A, Srinivasan BS, McAdams HH, Batzoglou S. Graemlin: general and robust alignment of multiple large interaction networks. Genome Res 2006, 16:1169-1181.
-
(2006)
Genome Res
, vol.16
, pp. 1169-1181
-
-
Flannick, J.1
Novak, A.2
Srinivasan, B.S.3
McAdams, H.H.4
Batzoglou, S.5
-
76
-
-
33645985807
-
Pairwise alignment of protein interaction networks
-
Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, et al. Pairwise alignment of protein interaction networks. J Comput Biol 2006, 13:182-199.
-
(2006)
J Comput Biol
, vol.13
, pp. 182-199
-
-
Koyutürk, M.1
Kim, Y.2
Topkara, U.3
Subramaniam, S.4
Szpankowski, W.5
-
77
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi AL, Albert R. Emergence of scaling in random networks. Science 1999, 286:509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
-
78
-
-
0242692460
-
Duplication models for biological networks
-
Chung F, Lu L, Dewey TG, Galas DJ. Duplication models for biological networks. J Comput Biol 2003, 10:677-687.
-
(2003)
J Comput Biol
, vol.10
, pp. 677-687
-
-
Chung, F.1
Lu, L.2
Dewey, T.G.3
Galas, D.J.4
-
79
-
-
61949235526
-
Dense graphlet statistics of protein interaction networks and random networks
-
Çolak R, Hormozdiari F, Moser F, Schonhuth A, Holman J, Ester M, Sahinalp C. Dense graphlet statistics of protein interaction networks and random networks. Pacific Symposium on Biocomputing, 2009.
-
(2009)
Pacific Symposium on Biocomputing
-
-
Çolak, R.1
Hormozdiari, F.2
Moser, F.3
Schonhuth, A.4
Holman, J.5
Ester, M.6
Sahinalp, C.7
-
80
-
-
34547558890
-
Not all scale-free networks are born equal: The role of the seed graph in PPI network evolution
-
Hormozdiari F, Berenbrink P, Przulj N, Sahinalp SC. Not all scale-free networks are born equal: The role of the seed graph in PPI network evolution. PLoS Comput Biol 2007, 3(7):e118.
-
(2007)
PLoS Comput Biol
, vol.3
, Issue.7
-
-
Hormozdiari, F.1
Berenbrink, P.2
Przulj, N.3
Sahinalp, S.C.4
-
82
-
-
84962671739
-
Fast and accurate alignment of multiple protein networks
-
Kalaev M, Bafna V, Sharan R. Fast and accurate alignment of multiple protein networks. Res Comput Mol Biol 2008, 12:246-256.
-
(2008)
Res Comput Mol Biol
, vol.12
, pp. 246-256
-
-
Kalaev, M.1
Bafna, V.2
Sharan, R.3
-
83
-
-
14844305006
-
An efficient algorithm for detecting frequent subgraphs in biological networks
-
Koyutürk M, Grama A, Szpankowski W. An efficient algorithm for detecting frequent subgraphs in biological networks. Bioinformatics 2004, 20:200-207.
-
(2004)
Bioinformatics
, vol.20
, pp. 200-207
-
-
Koyutürk, M.1
Grama, A.2
Szpankowski, W.3
-
84
-
-
47249149365
-
Automatic parameter learning for multiple network alignment
-
Flannick J, Novak A, Do JB, Srinivasan BS, Batzoglou S. Automatic parameter learning for multiple network alignment. Res Comput Mol Biol 2008, 4955:214-231.
-
(2008)
Res Comput Mol Biol
, vol.4955
, pp. 214-231
-
-
Flannick, J.1
Novak, A.2
Do, J.B.3
Srinivasan, B.S.4
Batzoglou, S.5
-
85
-
-
33646347364
-
QPath: a method for querying pathways in a protein-protein interaction network
-
Shlomi T, Segal D, Ruppin E, Sharan R. QPath: a method for querying pathways in a protein-protein interaction network. BMC Bioinform 2006, 7:199.
-
(2006)
BMC Bioinform
, vol.7
, pp. 199
-
-
Shlomi, T.1
Segal, D.2
Ruppin, E.3
Sharan, R.4
-
86
-
-
51349103135
-
QNet: a tool for querying protein interaction networks
-
Dost B, Shlomi T, Gupta N, Ruppin E, Bafna V, et al. QNet: a tool for querying protein interaction networks. J Comput Biol 2008, 15:913-925.
-
(2008)
J Comput Biol
, vol.15
, pp. 913-925
-
-
Dost, B.1
Shlomi, T.2
Gupta, N.3
Ruppin, E.4
Bafna, V.5
-
87
-
-
79956105675
-
Topology-free querying of protein interaction networks
-
Bruckner S, Hüffner F, Karp RM, Shamir R, Sharan R. Topology-free querying of protein interaction networks. Res Comput Mol Biol 2009, 13:74-89.
-
(2009)
Res Comput Mol Biol
, vol.13
, pp. 74-89
-
-
Bruckner, S.1
Hüffner, F.2
Karp, R.M.3
Shamir, R.4
Sharan, R.5
-
88
-
-
51349087811
-
Global alignment of multiple protein interaction networks with application to functional orthology detection
-
Singh R, Xu J, Berger B. Global alignment of multiple protein interaction networks with application to functional orthology detection. Proc Nat Acad Sci 2008, 105:12763-12768.
-
(2008)
Proc Nat Acad Sci
, vol.105
, pp. 12763-12768
-
-
Singh, R.1
Xu, J.2
Berger, B.3
-
89
-
-
49549096179
-
Pairwise global alignment of protein interaction networks by matching neighborhood topology
-
Singh R, Xu J, Berger B. Pairwise global alignment of protein interaction networks by matching neighborhood topology. Res Comput Mol Biol 2007, 11:16-31.
-
(2007)
Res Comput Mol Biol
, vol.11
, pp. 16-31
-
-
Singh, R.1
Xu, J.2
Berger, B.3
-
90
-
-
0037174670
-
Network motifs: simple building blocks of complex networks
-
Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, et al. Network motifs: simple building blocks of complex networks. Science 2002, 298:824-827.
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
-
91
-
-
0141484611
-
Evolutionary conservation of motif constituents in the yeast protein interaction network
-
Wuchty S, Oltvai ZN, Barabási AL. Evolutionary conservation of motif constituents in the yeast protein interaction network. Nat Genet 2003, 35:176-179.
-
(2003)
Nat Genet
, vol.35
, pp. 176-179
-
-
Wuchty, S.1
Oltvai, Z.N.2
Barabási, A.L.3
-
92
-
-
33846672214
-
Biological network comparison using graphlet degree distribution
-
Przulj Natasa. Biological network comparison using graphlet degree distribution. Bioinformatics 2007, 23:e177-e183.
-
(2007)
Bioinformatics
, vol.23
-
-
Natasa, P.1
-
93
-
-
14744273317
-
Inferring network mechanisms: the Drosophila melanogaster protein interaction network
-
Middendorf M, Ziv E, Wiggins CH. Inferring network mechanisms: the Drosophila melanogaster protein interaction network. Proc Natl Acad Sci 2005, 102:3192-3197.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 3192-3197
-
-
Middendorf, M.1
Ziv, E.2
Wiggins, C.H.3
-
94
-
-
27844551326
-
Dynamic properties of network motifs contribute to biological network organization
-
Prill RJJ, Iglesias PAA, Levchenko A. Dynamic properties of network motifs contribute to biological network organization. PLoS Biol 2005, 3(11):e343.
-
(2005)
PLoS Biol
, vol.3
, Issue.11
-
-
Prill, R.J.J.1
Iglesias, P.A.A.2
Levchenko, A.3
-
96
-
-
33747893280
-
Annotating proteins by mining protein interaction networks
-
Ki{dotless}raçM, Özsoyoglu G, Yang J. Annotating proteins by mining protein interaction networks. Bioinformatics 2006, 22:e260-e270.
-
(2006)
Bioinformatics
, vol.22
-
-
Kiraç, M.1
Özsoyoglu, G.2
Yang, J.3
-
97
-
-
35748980569
-
Mining biological networks for unknown pathways
-
Çakmak A, Özsoyodlu G. Mining biological networks for unknown pathways. Bioinformatics 2007, 23:2775-2783.
-
(2007)
Bioinformatics
, vol.23
, pp. 2775-2783
-
-
Çakmak, A.1
Özsoyodlu, G.2
-
98
-
-
84975860562
-
Biomolecular network motif counting and discovery by color coding
-
Alon N, Dao P, Hajirasouliha I, Hormozdiari F, Sahinalp CS. Biomolecular network motif counting and discovery by color coding. Bioinformatics 2008, 24:i241-i249.
-
(2008)
Bioinformatics
, vol.24
-
-
Alon, N.1
Dao, P.2
Hajirasouliha, I.3
Hormozdiari, F.4
Sahinalp, C.S.5
-
101
-
-
0038699587
-
Global protein function prediction from proteinprotein interaction networks
-
Vázquez A, Flammini A, Maritan A, Vespignani A. Global protein function prediction from proteinprotein interaction networks. Nat Biotechnol 2003, 21:697-700.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 697-700
-
-
Vázquez, A.1
Flammini, A.2
Maritan, A.3
Vespignani, A.4
-
102
-
-
0242268461
-
Predicting protein functions from redundancies in large-scale protein interaction networks
-
Samanta MP, Liang S. Predicting protein functions from redundancies in large-scale protein interaction networks. Proc Natl Acad Sci U S A 2003, 100:12579-12583.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12579-12583
-
-
Samanta, M.P.1
Liang, S.2
-
103
-
-
0742304254
-
Prediction of protein function using protein-protein interaction data
-
Deng M, Zhang K,Mehta S, Chen T, Sun F. Prediction of protein function using protein-protein interaction data. J Comput Biol 2003, 10:947-960.
-
(2003)
J Comput Biol
, vol.10
, pp. 947-960
-
-
Deng, M.1
Zhang, K.2
Mehta, S.3
Chen, T.4
Sun, F.5
-
104
-
-
1542327694
-
Whole-genome annotation by using evidence integration in functional-linkage networks
-
Karaoz U, Murali TM, Letovsky S, Zheng Y, Ding C, et al. Whole-genome annotation by using evidence integration in functional-linkage networks. Proc Natl Acad Sci U S A 2004, 101:2888-2893.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 2888-2893
-
-
Karaoz, U.1
Murali, T.M.2
Letovsky, S.3
Zheng, Y.4
Ding, C.5
-
105
-
-
41649119247
-
Protein networks in disease
-
Ideker T, Sharan R. Protein networks in disease. Genome Res 2008, 18:644-652.
-
(2008)
Genome Res
, vol.18
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
106
-
-
34547140875
-
The human disease network
-
Goh KI, Cusick ME, Valle D, Childs B, Vidal M, et al. The human disease network. Proc Natl Acad Sci 2007, 104:8685-8690.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 8685-8690
-
-
Goh, K.I.1
Cusick, M.E.2
Valle, D.3
Childs, B.4
Vidal, M.5
-
107
-
-
33747035889
-
Predicting disease genes using protein-protein interactions
-
Oti M, Snel B, Huynen MA, Brunner HG. Predicting disease genes using protein-protein interactions. J Med Genet 2006, 43:691-698.
-
(2006)
J Med Genet
, vol.43
, pp. 691-698
-
-
Oti, M.1
Snel, B.2
Huynen, M.A.3
Brunner, H.G.4
-
108
-
-
33947095027
-
A human phenomeinteractome network of protein complexes implicated in genetic disorders
-
Lage K, Karlberg OE, Størling ZM, Olason PI, Pedersen AG, Rigina O, et al. A human phenomeinteractome network of protein complexes implicated in genetic disorders. Nat Biotechnol 2007, 25:309-316.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 309-316
-
-
Lage, K.1
Karlberg, O.E.2
Størling, Z.M.3
Olason, P.I.4
Pedersen, A.G.5
Rigina, O.6
-
109
-
-
22844450110
-
Systematic interpretation of genetic interactions using protein networks
-
KelleyR, Ideker T. Systematic interpretation of genetic interactions using protein networks. Nat Biotechnol 2005, 23:561-566.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 561-566
-
-
Kelley, R.1
Ideker, T.2
-
110
-
-
0346095291
-
Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae
-
Ihmels J, Levy R, Barkai N. Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nat Biotechnol 2004, 22:86-92.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 86-92
-
-
Ihmels, J.1
Levy, R.2
Barkai, N.3
-
111
-
-
51349092391
-
Network-based prediction of human tissue-specific metabolism
-
Shlomi T, Cabili MN, Herrgard MJ, Palsson BO, Ruppin E. Network-based prediction of human tissue-specific metabolism. Nat Biotechnol 2008, 26:1003-1010.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1003-1010
-
-
Shlomi, T.1
Cabili, M.N.2
Herrgard, M.J.3
Palsson, B.O.4
Ruppin, E.5
-
112
-
-
4644326931
-
Genomic analysis of regulatory network dynamics reveals large topological changes
-
Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, et al. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 2004, 431:308-312.
-
(2004)
Nature
, vol.431
, pp. 308-312
-
-
Luscombe, N.M.1
Babu, M.M.2
Yu, H.3
Snyder, M.4
Teichmann, S.A.5
-
113
-
-
64349094767
-
Tissue specificity and the human protein interaction network
-
Bossi A, Lehner B. Tissue specificity and the human protein interaction network. Mol Syst Biol 2009, 5:260.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 260
-
-
Bossi, A.1
Lehner, B.2
-
114
-
-
0000801240
-
Discovering regulatory and signalling circuits in molecular interaction networks
-
Ideker T, Ozier O, Schwikowski B, Siegel AF. Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 2002, (supp. 1):S233-S240.
-
(2002)
Bioinformatics
, Issue.SUPP. 1
-
-
Ideker, T.1
Ozier, O.2
Schwikowski, B.3
Siegel, A.F.4
-
115
-
-
34248593385
-
Gene expression network analysis and applications to immunology
-
Nacu S, Critchley-Thorne R, Lee P, et al. Gene expression network analysis and applications to immunology. Bioinformatics 2007, 23:850-858.
-
(2007)
Bioinformatics
, vol.23
, pp. 850-858
-
-
Nacu, S.1
Critchley-Thorne, R.2
Lee, P.3
-
116
-
-
34347326247
-
Network-based analysis of affected biological processes in type 2 diabetes models
-
Liu M, Liberzon A, Kong SW, Lai WR, Park PJ, et al. Network-based analysis of affected biological processes in type 2 diabetes models. PLoS Genet 2007, 3:e96.
-
(2007)
PLoS Genet
, vol.3
-
-
Liu, M.1
Liberzon, A.2
Kong, S.W.3
Lai, W.R.4
Park, P.J.5
-
117
-
-
65449146537
-
Detecting diseasespecific dysregulated pathways via analysis of clinical expression profiles
-
Ulitsky I, Karp RM, Shamir R. Detecting diseasespecific dysregulated pathways via analysis of clinical expression profiles. Res Comput Mol Biol 2008, 12:347-359.
-
(2008)
Res Comput Mol Biol
, vol.12
, pp. 347-359
-
-
Ulitsky, I.1
Karp, R.M.2
Shamir, R.3
-
118
-
-
33847015674
-
Computational analysis of the synergy among multiple interacting genes
-
Anastassiou D. Computational analysis of the synergy among multiple interacting genes. Mol Syst Biol 2007, 3:83.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 83
-
-
Anastassiou, D.1
-
119
-
-
35348891430
-
Networkbased classification of breast cancer metastasis
-
Chuang HY, Lee E, Liu YT, LeeD, Ideker T.Networkbased classification of breast cancer metastasis. Mol Syst Biol 2007, 3:140.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
Lee, D.4
Ideker, T.5
-
120
-
-
40149090339
-
Identification of gene interactions associated with disease from gene expression data using synergy networks
-
Watkinson J,Wang X, Zheng T, Anastassiou D. Identification of gene interactions associated with disease from gene expression data using synergy networks. BMC Syst Biol 2008, 2:10.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 10
-
-
Watkinson, J.1
Wang, X.2
Zheng, T.3
Anastassiou, D.4
-
121
-
-
66149156998
-
Discovery and scoring of protein interaction subnetworks discriminative of late stage human colon cancer
-
Nibbe RK, Markowitz S,Myeroff L, Ewing R, Chance M. Discovery and scoring of protein interaction subnetworks discriminative of late stage human colon cancer.Mol Cell Prot 2009.
-
(2009)
Mol Cell Prot
-
-
Nibbe, R.K.1
Markowitz, S.2
Myeroff, L.3
Ewing, R.4
Chance, M.5
-
122
-
-
30344442462
-
Inferring functional information from domain co-evolution
-
Kim Y, KoyutürkM, Topkara U, Grama A, Subramaniam S. Inferring functional information from domain co-evolution. Bioinformatics 2006, 22:40-49.
-
(2006)
Bioinformatics
, vol.22
, pp. 40-49
-
-
Kim, Y.1
Koyutürk, M.2
Topkara, U.3
Grama, A.4
Subramaniam, S.5
-
123
-
-
0036799752
-
Inferring domaindomain interactions from protein-protein interactions
-
Deng M, Mehta S, Sun F, Chen T. Inferring domaindomain interactions from protein-protein interactions. Genome Res 2002, 12:1540-1548.
-
(2002)
Genome Res
, vol.12
, pp. 1540-1548
-
-
Deng, M.1
Mehta, S.2
Sun, F.3
Chen, T.4
-
124
-
-
34548742517
-
Identification of functional modules using network topology and high-throughput data
-
Ulitsky I, Shamir R. Identification of functional modules using network topology and high-throughput data. BMC Syst Biol 2007, 1:8.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 8
-
-
Ulitsky, I.1
Shamir, R.2
-
125
-
-
33846194268
-
Detecting conserved interaction patterns in biological networks
-
Koyutürk M, Kim Y, Subramaniam S, Szpankowski W, Grama A. Detecting conserved interaction patterns in biological networks. J Comput Biol 2006, 13:1299-1322.
-
(2006)
J Comput Biol
, vol.13
, pp. 1299-1322
-
-
Koyutürk, M.1
Kim, Y.2
Subramaniam, S.3
Szpankowski, W.4
Grama, A.5
-
126
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al. The COG database: an updated version includes eukaryotes. BMC Bioinform 2003, 4:41.
-
(2003)
BMC Bioinform
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
-
127
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright AJ, Van Dongen S, Ouzounis CA. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 2002, 30:1575-1584.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
129
-
-
37749031255
-
Next generation sequencing transforms today's biology
-
Schuster C. Next generation sequencing transforms today's biology. Nature Methods 2008, 5:16-18.
-
(2008)
Nature Methods
, vol.5
, pp. 16-18
-
-
Schuster, C.1
-
130
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004, 5: 101-113.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
131
-
-
33644527950
-
The model organism as a system: integrating 'omics' data sets
-
Joyce AR, Palsson BØ. The model organism as a system: integrating 'omics' data sets. Nat Rev Mol Cell Biol 2006, 7: 198-210.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 198-210
-
-
Joyce, A.R.1
Palsson, B.Ø.2
-
132
-
-
27144450537
-
Less is more in modelling large genetic networks
-
Bornholdt S. Less is more in modelling large genetic networks. Science 2005, 310: 449-451.
-
(2005)
Science
, vol.310
, pp. 449-451
-
-
Bornholdt, S.1
|