메뉴 건너뛰기




Volumn 21, Issue 17, 2005, Pages 3548-3557

Local modeling of global interactome networks

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; BIOTECHNOLOGY; GENE EXPRESSION; MASS SPECTROMETRY; METHODOLOGY; MOLECULAR DYNAMICS; NONHUMAN; PREDICTION; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; SENSITIVITY AND SPECIFICITY;

EID: 24144486554     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti567     Document Type: Article
Times cited : (65)

References (30)
  • 1
    • 0032489015 scopus 로고    scopus 로고
    • The cell as a collection of protein machines: Preparing the next generation of molecular biologists
    • Alberts,B. (1998) The cell as a collection of protein machines: Preparing the next generation of molecular biologists, Cell, 92 291-294.
    • (1998) Cell , vol.92 , pp. 291-294
    • Alberts, B.1
  • 2
    • 0027306799 scopus 로고
    • Genetics of eukaryotic RNA polymerase I, II, and III
    • Archambault,J. and Friesen,J.D. (1993) Genetics of eukaryotic RNA polymerase I, II, and III, Microbiol. Rev., 57, 703-724.
    • (1993) Microbiol. Rev. , vol.57 , pp. 703-724
    • Archambault, J.1    Friesen, J.D.2
  • 3
    • 0036789265 scopus 로고    scopus 로고
    • Analyzing yeast protein-protein interaction data obtained from different sources
    • Bader,G. and Hogue,C.W. (2002) Analyzing yeast protein-protein interaction data obtained from different sources, Nat. Biotechnol. 20, 991-997.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 991-997
    • Bader, G.1    Hogue, C.W.2
  • 4
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader,G. and Hogue,C.W. (2003) An automated method for finding molecular complexes in large protein interaction networks, BMC Bioinformatics 4, 2.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.1    Hogue, C.W.2
  • 5
    • 0036087548 scopus 로고    scopus 로고
    • Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)
    • Dwight,S.S. et al. (2002) Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO), Nucleic Acids Res., 30, 69-72.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 69-72
    • Dwight, S.S.1
  • 6
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin,A.-C. et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes, Nature, 415, 141-147.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.-C.1
  • 7
    • 0035733690 scopus 로고    scopus 로고
    • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
    • Ge,H. et al. (2001) Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae, Nat. Genet., 29, 482-486.
    • (2001) Nat. Genet. , vol.29 , pp. 482-486
    • Ge, H.1
  • 8
    • 0345600247 scopus 로고    scopus 로고
    • A protein interaction map of Drosophila melanogaster
    • Giot,L. et al. (2003) A protein interaction map of Drosophila melanogaster, Science, 302, 1727-1736.
    • (2003) Science , vol.302 , pp. 1727-1736
    • Giot, L.1
  • 9
    • 0035445792 scopus 로고    scopus 로고
    • A relationship between gene expression and protein interactions on the proteome scale: Analysis of bacteriophase T7 and the yeast Saccharomyces cerevisiae
    • Grigoriev,A. (2001) A relationship between gene expression and protein interactions on the proteome scale: Analysis of bacteriophase T7 and the yeast Saccharomyces cerevisiae, Nucleic Acids Res., 29, 3513-3519.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 3513-3519
    • Grigoriev, A.1
  • 10
    • 0035933149 scopus 로고    scopus 로고
    • Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I
    • Gross,S. and Moore,C. (2001) Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I, Proc. Natl Acad. Sci. USA, 98, 6080-6085.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 6080-6085
    • Gross, S.1    Moore, C.2
  • 11
    • 0033518234 scopus 로고    scopus 로고
    • From molecular to modular cell biology
    • Hartwell,L. et al. (1999) From molecular to modular cell biology, Nature, 402, C47-C52.
    • (1999) Nature , vol.402
    • Hartwell, L.1
  • 12
    • 0032901198 scopus 로고    scopus 로고
    • SMC-mediated chromosome mechanics: A conserved scheme from bacteria to vertebrates?
    • Hirano,T. (1999) SMC-mediated chromosome mechanics: A conserved scheme from bacteria to vertebrates?, Genes Devel., 13, 11-19.
    • (1999) Genes Devel. , vol.13 , pp. 11-19
    • Hirano, T.1
  • 13
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho,Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry, Nature, 415, 180-183.
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1
  • 14
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • Ihaka,R. and Gentleman,R. (1996) R: A language for data analysis and graphics, J. Comp. Graph. Stat., 5, 299-314.
    • (1996) J. Comp. Graph. Stat. , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 15
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito,T. et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome, Proc. Natl Acad. Sci. USA, 98, 4569-4574.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4569-4574
    • Ito, T.1
  • 16
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong,H. et al. (2001) Lethality and centrality in protein networks, Nature, 411, 41-42.
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1
  • 17
    • 0033577745 scopus 로고    scopus 로고
    • Tor proteins and protein phosphatase 2A reciprocally regulate Tap42 in controlling cell growth in yeast
    • Jiang,Y. and Broach,J. (1999) Tor proteins and protein phosphatase 2A reciprocally regulate Tap42 in controlling cell growth in yeast, EMBO J, 18, 2782-2792.
    • (1999) EMBO J. , vol.18 , pp. 2782-2792
    • Jiang, Y.1    Broach, J.2
  • 18
    • 0036279153 scopus 로고    scopus 로고
    • Protein interaction verification and functional annotation by integrated analysis of genome-scale data
    • Kemmeren,P. et al. (2002) Protein interaction verification and functional annotation by integrated analysis of genome-scale data, Mol. Cell, 9, 1133-1143.
    • (2002) Mol. Cell , vol.9 , pp. 1133-1143
    • Kemmeren, P.1
  • 19
    • 0142148210 scopus 로고    scopus 로고
    • A comprehensive set of protein complexes in yeast: Mining large scale protein-protein interaction screens
    • Krause,R. et al. (2003) A comprehensive set of protein complexes in yeast: Mining large scale protein-protein interaction screens, Bioinformatics, 19, 1901-1908.
    • (2003) Bioinformatics , vol.19 , pp. 1901-1908
    • Krause, R.1
  • 20
    • 9144264169 scopus 로고    scopus 로고
    • A map of the interactome network of the metazoan C. elegans
    • Li,S. et al. (2004) A map of the interactome network of the metazoan C. elegans, Science, 303, 540-543.
    • (2004) Science , vol.303 , pp. 540-543
    • Li, S.1
  • 21
    • 0031876171 scopus 로고    scopus 로고
    • Identification of a translation initiation factor 3 (eIF3) core complex, conserved in yeast and mammals, that interacts with eIF5
    • Phan,L. et al. (1998) Identification of a translation initiation factor 3 (eIF3) core complex, conserved in yeast and mammals, that interacts with eIF5, Mol. Cell. Biol., 18, 4935-4946.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 4935-4946
    • Phan, L.1
  • 22
    • 0035355352 scopus 로고    scopus 로고
    • met
    • met, EMBO J., 20, 2954-2965.
    • (2001) EMBO J. , vol.20 , pp. 2954-2965
    • Phan, L.1
  • 23
    • 0038709277 scopus 로고    scopus 로고
    • Catabolite degradation of fructose-1,6-biphosphatase in the yeast Saccharomyces cerevisiae: A genome-wide screen idenitifes eight nodel GID genes and indicates the existence of two degradation pathways
    • Regelmann,J. et al. (2003) Catabolite degradation of fructose-1,6-biphosphatase in the yeast Saccharomyces cerevisiae: a genome-wide screen idenitifes eight nodel GID genes and indicates the existence of two degradation pathways, Mol. Biol. Cell, 14, 1652-1663.
    • (2003) Mol. Biol. Cell , vol.14 , pp. 1652-1663
    • Regelmann, J.1
  • 24
    • 0037832188 scopus 로고    scopus 로고
    • Computational methods of analysis of protein-protein interactions
    • Salwinski,L. and Eisenberg,D. (2003) Computational methods of analysis of protein-protein interactions, Curr. Opin. Struct. Biol., 13 377-382.
    • (2003) Curr. Opin. Struct. Biol. , vol.13 , pp. 377-382
    • Salwinski, L.1    Eisenberg, D.2
  • 25
    • 33645595576 scopus 로고    scopus 로고
    • Making sense of high-throughput protein-protein interaction data
    • Article 39
    • Scholtens,D. and Gentleman,R. (2004) Making sense of high-throughput protein-protein interaction data. Stat. App. in Genetics and Mol. Biol. 3, Article 39.
    • (2004) Stat. App. in Genetics and Mol. Biol. , vol.3
    • Scholtens, D.1    Gentleman, R.2
  • 26
    • 0033028596 scopus 로고    scopus 로고
    • Systematic determination of genetic network architecture
    • Tavazoie,S. et al. (1999) Systematic determination of genetic network architecture, Nat. Genet., 22, 281-285.
    • (1999) Nat. Genet. , vol.22 , pp. 281-285
    • Tavazoie, S.1
  • 27
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz,P. et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae, Nature, 403, 623-627.
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1
  • 28
    • 0035830505 scopus 로고    scopus 로고
    • A biological atlas of functional maps
    • Vidal,M. (2001) A biological atlas of functional maps, Cell, 104, 333-339.
    • (2001) Cell , vol.104 , pp. 333-339
    • Vidal, M.1
  • 29
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • von Mering,C. et al. (2002) Comparative assessment of large-scale data sets of protein-protein interactions, Nature, 417, 399-403.
    • (2002) Nature , vol.417 , pp. 399-403
    • von Mering, C.1
  • 30
    • 0031193920 scopus 로고    scopus 로고
    • The complex containing actin-related proteins Arp2 and Arp3 is required for the motility and integrity of yeast actin patches
    • Winter,D. et al. (1997) The complex containing actin-related proteins Arp2 and Arp3 is required for the motility and integrity of yeast actin patches, Curr. Biol., 7, 519-529.
    • (1997) Curr. Biol. , vol.7 , pp. 519-529
    • Winter, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.