-
1
-
-
0035281870
-
Metabolic modeling of microbial strains in silico
-
Covert M.W., et al. Metabolic modeling of microbial strains in silico. Trends Biochem. Sci. 26:2001;179-186.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 179-186
-
-
Covert, M.W.1
-
2
-
-
0036001069
-
Metabolic modelling of microbes: The flux-balance approach
-
Edwards J.S., et al. Metabolic modelling of microbes: the flux-balance approach. Environ. Microbiol. 4:2002;133-140.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 133-140
-
-
Edwards, J.S.1
-
3
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
Stelling J., et al. Metabolic network structure determines key aspects of functionality and regulation. Nature. 420:2002;190-193.
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
-
5
-
-
0033168258
-
Integrated pathway-genome databases and their role in drug discovery
-
Karp P.D., et al. Integrated pathway-genome databases and their role in drug discovery. Trends Biotechnol. 17:1999;275-281.
-
(1999)
Trends Biotechnol.
, vol.17
, pp. 275-281
-
-
Karp, P.D.1
-
6
-
-
0035860545
-
Pathway databases: A case study in computational symbolic theories
-
Karp P.D. Pathway databases: a case study in computational symbolic theories. Science. 293:2001;2040-2044.
-
(2001)
Science
, vol.293
, pp. 2040-2044
-
-
Karp, P.D.1
-
7
-
-
0034020583
-
Global properties of the metabolic map of Escherichia coli
-
Ouzounis C.A., Karp P.D. Global properties of the metabolic map of Escherichia coli. Genome Res. 10:2000;568-576.
-
(2000)
Genome Res.
, vol.10
, pp. 568-576
-
-
Ouzounis, C.A.1
Karp, P.D.2
-
8
-
-
0035169963
-
An algebraic-combinatorial model for the identification and mapping of biochemical pathways
-
Oliveira J.S., et al. An algebraic-combinatorial model for the identification and mapping of biochemical pathways. Bull. Math. Biol. 63:2001;1163-1196.
-
(2001)
Bull. Math. Biol.
, vol.63
, pp. 1163-1196
-
-
Oliveira, J.S.1
-
9
-
-
0023995387
-
MPS: An artificially intelligent software system for the analysis and synthesis of metabolic pathways
-
Seressiotis A., Bailey J.E. MPS: an artificially intelligent software system for the analysis and synthesis of metabolic pathways. Biotechnol. Bioeng. 31:1988;587-602.
-
(1988)
Biotechnol. Bioeng.
, vol.31
, pp. 587-602
-
-
Seressiotis, A.1
Bailey, J.E.2
-
10
-
-
0025647585
-
Computer-aided synthesis of biochemical pathways
-
Mavrovouniotis M.L., et al. Computer-aided synthesis of biochemical pathways. Biotechnol. Bioeng. 36:1990;1119-1132.
-
(1990)
Biotechnol. Bioeng.
, vol.36
, pp. 1119-1132
-
-
Mavrovouniotis, M.L.1
-
11
-
-
0000029295
-
On elementary flux modes in biochemical reaction systems at steady state
-
Schuster S., Hilgetag C. On elementary flux modes in biochemical reaction systems at steady state. J. Biol. Syst. 2:1994;165-182.
-
(1994)
J. Biol. Syst.
, vol.2
, pp. 165-182
-
-
Schuster, S.1
Hilgetag, C.2
-
12
-
-
0034064689
-
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
-
Schuster S., et al. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat. Biotechnol. 18:2000;326-332.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 326-332
-
-
Schuster, S.1
-
13
-
-
0033136109
-
Metabolic pathway analysis: Basic concepts and scientific applications in the post-genomic era
-
Schilling C.H., et al. Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era. Biotechnol. Prog. 15:1999;296-303.
-
(1999)
Biotechnol. Prog.
, vol.15
, pp. 296-303
-
-
Schilling, C.H.1
-
14
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
-
Schilling C.H., et al. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theor. Biol. 203:2000;229-248.
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
-
15
-
-
0036330798
-
Genome-scale metabolic model of Helicobacterpylori 26695
-
Schilling C.H., et al. Genome-scale metabolic model of Helicobacterpylori 26695. J. Bacteriol. 184:2002;4582-4593.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4582-4593
-
-
Schilling, C.H.1
-
16
-
-
0034615788
-
Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis
-
Schilling C.H., Palsson B.O. Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis. J. Theor. Biol. 203:2000;249-283.
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 249-283
-
-
Schilling, C.H.1
Palsson, B.O.2
-
17
-
-
0036350955
-
The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy
-
Papin J.A., et al. The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy. J. Theor. Biol. 215:2002;67-82.
-
(2002)
J. Theor. Biol.
, vol.215
, pp. 67-82
-
-
Papin, J.A.1
-
18
-
-
0036100243
-
Determination of redundancy and systems properties of Helicobacterpylori's metabolic network using genome-scale extreme pathway analysis
-
Price N.D., et al. Determination of redundancy and systems properties of Helicobacterpylori's metabolic network using genome-scale extreme pathway analysis. Genome Res. 12:2002;760-769.
-
(2002)
Genome Res.
, vol.12
, pp. 760-769
-
-
Price, N.D.1
-
19
-
-
0026802334
-
Metabolic control analysis: A survey of its theoretical and experimental development
-
Fell D.A. Metabolic control analysis: a survey of its theoretical and experimental development. Biochem. J. 286:1992;313-330.
-
(1992)
Biochem. J.
, vol.286
, pp. 313-330
-
-
Fell, D.A.1
-
20
-
-
0023709196
-
Metabolic control theory: A structural approach
-
Reder C. Metabolic control theory: a structural approach. J. Theor. Biol. 135:1988;175-201.
-
(1988)
J. Theor. Biol.
, vol.135
, pp. 175-201
-
-
Reder, C.1
-
21
-
-
0017754837
-
Metabolic regulation and mathematical models
-
Heinrich R., et al. Metabolic regulation and mathematical models. Prog. Biophys. Mol. Biol. 32:1977;1-82.
-
(1977)
Prog. Biophys. Mol. Biol.
, vol.32
, pp. 1-82
-
-
Heinrich, R.1
-
25
-
-
0023714694
-
Stoichiometric network analysis
-
Clarke B.L. Stoichiometric network analysis. Cell Biophys. 12:1988;237-253.
-
(1988)
Cell Biophys.
, vol.12
, pp. 237-253
-
-
Clarke, B.L.1
-
26
-
-
0002013127
-
Stability of complex reaction networks
-
I.P.A.S.A. Rice. New York: John Wiley
-
Clarke B.L. Stability of complex reaction networks. Rice I.P.A.S.A. Advances in Chemical Physics. 1980;1-215 John Wiley, New York.
-
(1980)
Advances in Chemical Physics
, pp. 1-215
-
-
Clarke, B.L.1
-
28
-
-
0037197159
-
Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria
-
Klamt S. Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnol. Bioeng. 77:2002;734-751.
-
(2002)
Biotechnol. Bioeng.
, vol.77
, pp. 734-751
-
-
Klamt, S.1
-
29
-
-
0038335203
-
Elementary mode analysis illustrated with human red cell metabolism
-
D. et al. Larsson. Chalmers
-
Schuster S., et al. Elementary mode analysis illustrated with human red cell metabolism. Larsson D., et al. BioThermoKinetics in the Post Genomic Era. 1998;332-339 Chalmers.
-
(1998)
BioThermoKinetics in the Post Genomic Era
, pp. 332-339
-
-
Schuster, S.1
-
30
-
-
0035997009
-
Extreme pathway analysis of human red blood cell metabolism
-
Wiback S.J., Palsson B.O. Extreme pathway analysis of human red blood cell metabolism. Biophys. J. 83:2002;808-818.
-
(2002)
Biophys. J.
, vol.83
, pp. 808-818
-
-
Wiback, S.J.1
Palsson, B.O.2
-
31
-
-
0030571222
-
Pathway analysis, engineering and physiological considerations for redirecting central metabolism
-
Liao J.C., et al. Pathway analysis, engineering and physiological considerations for redirecting central metabolism. Biotechnol. Bioeng. 52:1996;129-140.
-
(1996)
Biotechnol. Bioeng.
, vol.52
, pp. 129-140
-
-
Liao, J.C.1
-
32
-
-
0034447725
-
Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
-
Schilling C.H., et al. Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. Biotechnol. Bioeng. 71:2000;286-306.
-
(2000)
Biotechnol. Bioeng.
, vol.71
, pp. 286-306
-
-
Schilling, C.H.1
-
33
-
-
0037023907
-
Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph Methylobacterium extorquens AM1, with application to reconstruction of C(3) and C(4) metabolism
-
Van Dien S.J., Lidstrom M.E. Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph Methylobacterium extorquens AM1, with application to reconstruction of C(3) and C(4) metabolism. Biotechnol. Bioeng. 78:2002;296-312.
-
(2002)
Biotechnol. Bioeng.
, vol.78
, pp. 296-312
-
-
Van Dien, S.J.1
Lidstrom, M.E.2
-
34
-
-
0037200931
-
A functional genomics approach using metabolomics and in silico pathway analysis
-
Forster J., et al. A functional genomics approach using metabolomics and in silico pathway analysis. Biotechnol. Bioeng. 79:2002;703-712.
-
(2002)
Biotechnol. Bioeng.
, vol.79
, pp. 703-712
-
-
Forster, J.1
-
35
-
-
0037142769
-
Metabolic pathway analysis of a recombinant yeast for rational strain development
-
Carlson R., et al. Metabolic pathway analysis of a recombinant yeast for rational strain development. Biotechnol. Bioeng. 79:2002;121-134.
-
(2002)
Biotechnol. Bioeng.
, vol.79
, pp. 121-134
-
-
Carlson, R.1
-
36
-
-
0033215210
-
Pathway alignment: Application to the comparative analysis of glycolytic enzymes
-
Dandekar T., et al. Pathway alignment: application to the comparative analysis of glycolytic enzymes. Biochem. J. 343:1999;115-124.
-
(1999)
Biochem. J.
, vol.343
, pp. 115-124
-
-
Dandekar, T.1
-
37
-
-
0036526245
-
Analysis of carbon metabolism in Escherichia coli strains with an inactive phosphotransferase system by (13)C labeling and NMR spectroscopy
-
Flores S., et al. Analysis of carbon metabolism in Escherichia coli strains with an inactive phosphotransferase system by (13)C labeling and NMR spectroscopy. Metab. Eng. 4:2002;124-137.
-
(2002)
Metab. Eng.
, vol.4
, pp. 124-137
-
-
Flores, S.1
-
38
-
-
0344052685
-
METATOOL: For studying metabolic networks
-
Pfeiffer T., et al. METATOOL: for studying metabolic networks. Bioinformatics. 15:1999;251-257.
-
(1999)
Bioinformatics
, vol.15
, pp. 251-257
-
-
Pfeiffer, T.1
-
39
-
-
0036916269
-
Extreme pathway lengths and reaction participation in genome-scale metabolic networks
-
Papin J.A., et al. Extreme pathway lengths and reaction participation in genome-scale metabolic networks. Genome Res. 12:2002;1889-1900.
-
(2002)
Genome Res.
, vol.12
, pp. 1889-1900
-
-
Papin, J.A.1
-
40
-
-
0035725112
-
Use of network analysis of metaoblic systems in bioengineering
-
Schuster S., et al. Use of network analysis of metaoblic systems in bioengineering. Bioprocess Biosyst. Eng. 24:2002;363-372.
-
(2002)
Bioprocess Biosyst. Eng.
, vol.24
, pp. 363-372
-
-
Schuster, S.1
-
41
-
-
0037424661
-
Constraints-based models: Regulation of gene expression reduces the steady-state solution space
-
Covert M.W., Palsson B.O. Constraints-based models: regulation of gene expression reduces the steady-state solution space. J. Theor. Biol. 221:2003;309-325.
-
(2003)
J. Theor. Biol.
, vol.221
, pp. 309-325
-
-
Covert, M.W.1
Palsson, B.O.2
-
42
-
-
0035071155
-
Dynamic simulation of the human red blood cell metabolic network
-
Jamshidi N., et al. Dynamic simulation of the human red blood cell metabolic network. Bioinformatics. 17:2001;286-287.
-
(2001)
Bioinformatics
, vol.17
, pp. 286-287
-
-
Jamshidi, N.1
-
43
-
-
0024842144
-
Metabolic dynamics in the human red cell. Part I-A comprehensive kinetic model
-
Joshi A., Palsson B.O. Metabolic dynamics in the human red cell. Part I-A comprehensive kinetic model. J. Theor. Biol. 141:1989;515-528.
-
(1989)
J. Theor. Biol.
, vol.141
, pp. 515-528
-
-
Joshi, A.1
Palsson, B.O.2
-
44
-
-
0033567930
-
Model of 2-3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed kinetic equations: Computer simulation and metabolic control analysis
-
Mulquiney P.J., Kuchel P.W. Model of 2-3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed kinetic equations: computer simulation and metabolic control analysis. Biochem. J. 342:1999;597-604.
-
(1999)
Biochem. J.
, vol.342
, pp. 597-604
-
-
Mulquiney, P.J.1
Kuchel, P.W.2
-
45
-
-
0016524924
-
Mathematical analysis of multienzyme systems. I: Modelling of glycolysis of human erythrocytes
-
Rapoport T.A., Heinrich R. Mathematical analysis of multienzyme systems. I: modelling of glycolysis of human erythrocytes. Biosystems. 7:1975;120-129.
-
(1975)
Biosystems
, vol.7
, pp. 120-129
-
-
Rapoport, T.A.1
Heinrich, R.2
-
46
-
-
0034995375
-
Complex biology with no parameters
-
Bailey J.E. Complex biology with no parameters. Nat. Biotechnol. 19:2001;503-504.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 503-504
-
-
Bailey, J.E.1
-
47
-
-
0001827017
-
Metabolic flux balance analysis
-
S.Y. Lee, & E.T. et al. Papoutsakis. Marcel Deker
-
Edwards J.S., et al. Metabolic flux balance analysis. Lee S.Y., Papoutsakis E.T., et al. Metabolic Engineering. 1999;Marcel Deker.
-
(1999)
Metabolic Engineering
-
-
Edwards, J.S.1
-
48
-
-
0033080396
-
Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
-
Schuster S., et al. Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. Trends Biotechnol. 17:1999;53-60.
-
(1999)
Trends Biotechnol.
, vol.17
, pp. 53-60
-
-
Schuster, S.1
-
51
-
-
0036188159
-
Exploring the pathway structure of metabolism: Decomposition into subnetworks and application to Mycoplasma pneumoniae
-
Schuster S., et al. Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. Bioinformatics. 18:2002;351-361.
-
(2002)
Bioinformatics
, vol.18
, pp. 351-361
-
-
Schuster, S.1
-
52
-
-
0036840340
-
Extreme pathways and Kirchhoff's second law
-
Price N.D., et al. Extreme pathways and Kirchhoff's second law. Biophys. J. 83:2002;2879-2882.
-
(2002)
Biophys. J.
, vol.83
, pp. 2879-2882
-
-
Price, N.D.1
-
53
-
-
0033764285
-
The challenges of in silico biology
-
Palsson B.O. The challenges of in silico biology. Nat. Biotechnol. 18:2000;1147-1150.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1147-1150
-
-
Palsson, B.O.1
-
55
-
-
0037304679
-
Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices
-
(2003)
Biophys. J.
, vol.84
, pp. 794-804
-
-
Price, N.D.1
|