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Volumn 12, Issue 6, 2005, Pages 835-846

Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data

Author keywords

Heavy subgraph; Probabilistic model; Protein interaction network

Indexed keywords

BACTERIAL PROTEIN; FUNGAL PROTEIN;

EID: 23844447959     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2005.12.835     Document Type: Conference Paper
Times cited : (138)

References (27)
  • 2
    • 0036789265 scopus 로고    scopus 로고
    • Analyzing yeast protein-protein data obtained from different sources
    • Bader, G.D., and Hogue, C.W.V. 2002. Analyzing yeast protein-protein data obtained from different sources. Nature Biotechnol. 20, 991-997.
    • (2002) Nature Biotechnol. , vol.20 , pp. 991-997
    • Bader, G.D.1    Hogue, C.W.V.2
  • 3
    • 0033861549 scopus 로고    scopus 로고
    • Human and mouse gene structure: Comparative analysis and application to exon prediction
    • Batzoglou, S., Pachter, L., Mesirov, J.P., Berger, B., and Lander, E.S. 2000. Human and mouse gene structure: Comparative analysis and application to exon prediction. Genome Res. 10(7), 950-958.
    • (2000) Genome Res. , vol.10 , Issue.7 , pp. 950-958
    • Batzoglou, S.1    Pachter, L.2    Mesirov, J.P.3    Berger, B.4    Lander, E.S.5
  • 4
    • 0037016444 scopus 로고    scopus 로고
    • Combined functional genomic maps of the C. elegans DNA damage response
    • Boulton, S.J., et al. 2001. Combined functional genomic maps of the C. elegans DNA damage response. Science 295, 127-131.
    • (2001) Science , vol.295 , pp. 127-131
    • Boulton, S.J.1
  • 5
    • 0037482108 scopus 로고    scopus 로고
    • Assessment of the reliability of protein-protein interactions and protein function prediction
    • Deng, M., Sun, F., and Chen, T. 2003. Assessment of the reliability of protein-protein interactions and protein function prediction. 8th Pac. Symp. on Biocomputing, 140-151.
    • (2003) 8th Pac. Symp. on Biocomputing , pp. 140-151
    • Deng, M.1    Sun, F.2    Chen, T.3
  • 6
    • 0345600247 scopus 로고    scopus 로고
    • A protein interaction map of Drosophila melanogaster
    • Giot, L., et al. 2003. A protein interaction map of Drosophila melanogaster. Science 302(5651), 1727-1736.
    • (2003) Science , vol.302 , Issue.5651 , pp. 1727-1736
    • Giot, L.1
  • 7
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho, Y., et al. 2002. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180-183.
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1
  • 8
    • 0010656061 scopus 로고    scopus 로고
    • Exploring the protein interactome using comprehensive two-hybrid projects
    • Ito, T., Chiba, T., and Yoshida, M. 2001. Exploring the protein interactome using comprehensive two-hybrid projects. Trends Biotechnol. 19, S23-S27.
    • (2001) Trends Biotechnol. , vol.19
    • Ito, T.1    Chiba, T.2    Yoshida, M.3
  • 10
    • 0141593601 scopus 로고    scopus 로고
    • Conserved pathways within bacteria and yeast as revealed by global protein network alignment
    • Kelley, B.P., Sharan, R., Karp, R.M., et al. 2003. Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc. Natl. Acad. Sci. USA 100, 11394-11399.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 11394-11399
    • Kelley, B.P.1    Sharan, R.2    Karp, R.M.3
  • 11
    • 9144264169 scopus 로고    scopus 로고
    • A map of the interactome network of the metazoan C. elegans
    • Li, S., et al. 2004. A map of the interactome network of the metazoan C. elegans. Science 303(5657), 540-543.
    • (2004) Science , vol.303 , Issue.5657 , pp. 540-543
    • Li, S.1
  • 12
    • 0036105591 scopus 로고    scopus 로고
    • rVista for comparative sequence-based discovery of functional transcription factor binding sites
    • Loots, G.G., Ovcharenko, I., Pachter, L., et al. 2002. rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res. 12(5), 832-839.
    • (2002) Genome Res. , vol.12 , Issue.5 , pp. 832-839
    • Loots, G.G.1    Ovcharenko, I.2    Pachter, L.3
  • 13
    • 0034923505 scopus 로고    scopus 로고
    • Analysis of proteins and proteomes by mass spectrometry
    • Mann, M., Hendrickson, R.C., and Pandey, A. 2001. Analysis of proteins and proteomes by mass spectrometry. Ann. Rev. Biochem. 70, 437-473.
    • (2001) Ann. Rev. Biochem. , vol.70 , pp. 437-473
    • Mann, M.1    Hendrickson, R.C.2    Pandey, A.3
  • 14
    • 0035211290 scopus 로고    scopus 로고
    • Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs"
    • Matthews, L.R., et al. 2001. Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs." Genome Res. 11, 2120-2126.
    • (2001) Genome Res. , vol.11 , pp. 2120-2126
    • Matthews, L.R.1
  • 15
    • 0034667776 scopus 로고    scopus 로고
    • A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters
    • Ogata, H., Fujibuchi, W., Goto, S., and Kanehisa, M. 2000. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. Nucl. Acids Res. 28, 4021-4028.
    • (2000) Nucl. Acids Res. , vol.28 , pp. 4021-4028
    • Ogata, H.1    Fujibuchi, W.2    Goto, S.3    Kanehisa, M.4
  • 16
    • 0033551248 scopus 로고    scopus 로고
    • Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
    • Pellegrini, M., et al. 1999. Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles. Proc. Natl. Acad. Sci. USA 96, 4285-4288.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 4285-4288
    • Pellegrini, M.1
  • 17
    • 0035843145 scopus 로고    scopus 로고
    • The protein-protein interaction map of Helicobacter pylori
    • Rain, J.C., et al. 2001. The protein-protein interaction map of Helicobacter pylori. Nature 409, 211-215.
    • (2001) Nature , vol.409 , pp. 211-215
    • Rain, J.C.1
  • 20
    • 1242326890 scopus 로고    scopus 로고
    • CREME: A framework for identifying cis-regulatory modules in human-mouse conserved segments
    • Sharan, R., Ovcharenko, I., Ben-Hur, A., and Karp, R.M. 2003. CREME: A framework for identifying cis-regulatory modules in human-mouse conserved segments. Bioinformatics 19(Suppl 1), 1283-1291.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1 , pp. 1283-1291
    • Sharan, R.1    Ovcharenko, I.2    Ben-Hur, A.3    Karp, R.M.4
  • 21
    • 1542357674 scopus 로고    scopus 로고
    • Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
    • Tanay, A., Sharan, R., Kupiec, M., and Shamir, R. 2004. Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. Proc. Natl. Acad. Sci. USA 101(9), 2981-2986.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , Issue.9 , pp. 2981-2986
    • Tanay, A.1    Sharan, R.2    Kupiec, M.3    Shamir, R.4
  • 22
    • 11244306358 scopus 로고    scopus 로고
    • Discovering statistically significant biclusters in gene expression data
    • Tanay, A., Sharan, R., and Shamir, R. 2002. Discovering statistically significant biclusters in gene expression data. Bioinformatics 18(Suppl 1), 136-144.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1 , pp. 136-144
    • Tanay, A.1    Sharan, R.2    Shamir, R.3
  • 23
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: A tool for genome-scale analysis of protein functions and evolution
    • Tatusov, R.L., Galperin, M.Y., Darren, A., Natale, A., and Koonin, E.V. 2000. The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucl. Acids Res. 28(1), 3336.
    • (2000) Nucl. Acids Res. , vol.28 , Issue.1 , pp. 3336
    • Tatusov, R.L.1    Galperin, M.Y.2    Darren, A.3    Natale, A.4    Koonin, E.V.5
  • 25
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz, P., et al. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403(6770), 623-627.
    • (2000) Nature , vol.403 , Issue.6770 , pp. 623-627
    • Uetz, P.1
  • 26
    • 18444400543 scopus 로고    scopus 로고
    • The protein information resource: An integrated public resource of functional annotation of proteins
    • Wu, C.H., et al. 2002. The protein information resource: An integrated public resource of functional annotation of proteins. Nucl. Acids Res. 30, 35-37.
    • (2002) Nucl. Acids Res. , vol.30 , pp. 35-37
    • Wu, C.H.1
  • 27
    • 0036088133 scopus 로고    scopus 로고
    • DIP, the database of interacting proteins: A research tool for studying cellular networks of protein interactions
    • Xenarios, I., et al. 2002. DIP, the database of interacting proteins: A research tool for studying cellular networks of protein interactions. Nucl. Acids Res. 30, 303-305.
    • (2002) Nucl. Acids Res. , vol.30 , pp. 303-305
    • Xenarios, I.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.