-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucl. Acids Res. 25(17), 3389-3402.
-
(1997)
Nucl. Acids Res.
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0036789265
-
Analyzing yeast protein-protein data obtained from different sources
-
Bader, G.D., and Hogue, C.W.V. 2002. Analyzing yeast protein-protein data obtained from different sources. Nature Biotechnol. 20, 991-997.
-
(2002)
Nature Biotechnol.
, vol.20
, pp. 991-997
-
-
Bader, G.D.1
Hogue, C.W.V.2
-
3
-
-
0033861549
-
Human and mouse gene structure: Comparative analysis and application to exon prediction
-
Batzoglou, S., Pachter, L., Mesirov, J.P., Berger, B., and Lander, E.S. 2000. Human and mouse gene structure: Comparative analysis and application to exon prediction. Genome Res. 10(7), 950-958.
-
(2000)
Genome Res.
, vol.10
, Issue.7
, pp. 950-958
-
-
Batzoglou, S.1
Pachter, L.2
Mesirov, J.P.3
Berger, B.4
Lander, E.S.5
-
4
-
-
0037016444
-
Combined functional genomic maps of the C. elegans DNA damage response
-
Boulton, S.J., et al. 2001. Combined functional genomic maps of the C. elegans DNA damage response. Science 295, 127-131.
-
(2001)
Science
, vol.295
, pp. 127-131
-
-
Boulton, S.J.1
-
5
-
-
0037482108
-
Assessment of the reliability of protein-protein interactions and protein function prediction
-
Deng, M., Sun, F., and Chen, T. 2003. Assessment of the reliability of protein-protein interactions and protein function prediction. 8th Pac. Symp. on Biocomputing, 140-151.
-
(2003)
8th Pac. Symp. on Biocomputing
, pp. 140-151
-
-
Deng, M.1
Sun, F.2
Chen, T.3
-
6
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot, L., et al. 2003. A protein interaction map of Drosophila melanogaster. Science 302(5651), 1727-1736.
-
(2003)
Science
, vol.302
, Issue.5651
, pp. 1727-1736
-
-
Giot, L.1
-
7
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho, Y., et al. 2002. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
-
8
-
-
0010656061
-
Exploring the protein interactome using comprehensive two-hybrid projects
-
Ito, T., Chiba, T., and Yoshida, M. 2001. Exploring the protein interactome using comprehensive two-hybrid projects. Trends Biotechnol. 19, S23-S27.
-
(2001)
Trends Biotechnol.
, vol.19
-
-
Ito, T.1
Chiba, T.2
Yoshida, M.3
-
10
-
-
0141593601
-
Conserved pathways within bacteria and yeast as revealed by global protein network alignment
-
Kelley, B.P., Sharan, R., Karp, R.M., et al. 2003. Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc. Natl. Acad. Sci. USA 100, 11394-11399.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 11394-11399
-
-
Kelley, B.P.1
Sharan, R.2
Karp, R.M.3
-
11
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li, S., et al. 2004. A map of the interactome network of the metazoan C. elegans. Science 303(5657), 540-543.
-
(2004)
Science
, vol.303
, Issue.5657
, pp. 540-543
-
-
Li, S.1
-
12
-
-
0036105591
-
rVista for comparative sequence-based discovery of functional transcription factor binding sites
-
Loots, G.G., Ovcharenko, I., Pachter, L., et al. 2002. rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res. 12(5), 832-839.
-
(2002)
Genome Res.
, vol.12
, Issue.5
, pp. 832-839
-
-
Loots, G.G.1
Ovcharenko, I.2
Pachter, L.3
-
13
-
-
0034923505
-
Analysis of proteins and proteomes by mass spectrometry
-
Mann, M., Hendrickson, R.C., and Pandey, A. 2001. Analysis of proteins and proteomes by mass spectrometry. Ann. Rev. Biochem. 70, 437-473.
-
(2001)
Ann. Rev. Biochem.
, vol.70
, pp. 437-473
-
-
Mann, M.1
Hendrickson, R.C.2
Pandey, A.3
-
14
-
-
0035211290
-
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs"
-
Matthews, L.R., et al. 2001. Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs." Genome Res. 11, 2120-2126.
-
(2001)
Genome Res.
, vol.11
, pp. 2120-2126
-
-
Matthews, L.R.1
-
15
-
-
0034667776
-
A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters
-
Ogata, H., Fujibuchi, W., Goto, S., and Kanehisa, M. 2000. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. Nucl. Acids Res. 28, 4021-4028.
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 4021-4028
-
-
Ogata, H.1
Fujibuchi, W.2
Goto, S.3
Kanehisa, M.4
-
16
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
-
Pellegrini, M., et al. 1999. Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles. Proc. Natl. Acad. Sci. USA 96, 4285-4288.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
-
17
-
-
0035843145
-
The protein-protein interaction map of Helicobacter pylori
-
Rain, J.C., et al. 2001. The protein-protein interaction map of Helicobacter pylori. Nature 409, 211-215.
-
(2001)
Nature
, vol.409
, pp. 211-215
-
-
Rain, J.C.1
-
18
-
-
84901476329
-
Cluster graph modification problems
-
Shamir, R., Sharan, R., and Tsur, D. 2002. Cluster graph modification problems. Proc. 27th Int. Workshop Graph-Theoretic Concepts in Computer Science (WG), 379-390.
-
(2002)
Proc. 27th Int. Workshop Graph-Theoretic Concepts in Computer Science (WG)
, pp. 379-390
-
-
Shamir, R.1
Sharan, R.2
Tsur, D.3
-
19
-
-
2442534964
-
Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
-
Sharan, R., Ideker, T., Kelley, B.P., Shamir, R., and Karp, R.M. 2004. Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. Proc. 8th Ann. Int. Conf. on Research in Computational Molecular Biology, 282-289.
-
(2004)
Proc. 8th Ann. Int. Conf. on Research in Computational Molecular Biology
, pp. 282-289
-
-
Sharan, R.1
Ideker, T.2
Kelley, B.P.3
Shamir, R.4
Karp, R.M.5
-
20
-
-
1242326890
-
CREME: A framework for identifying cis-regulatory modules in human-mouse conserved segments
-
Sharan, R., Ovcharenko, I., Ben-Hur, A., and Karp, R.M. 2003. CREME: A framework for identifying cis-regulatory modules in human-mouse conserved segments. Bioinformatics 19(Suppl 1), 1283-1291.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
, pp. 1283-1291
-
-
Sharan, R.1
Ovcharenko, I.2
Ben-Hur, A.3
Karp, R.M.4
-
21
-
-
1542357674
-
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
-
Tanay, A., Sharan, R., Kupiec, M., and Shamir, R. 2004. Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. Proc. Natl. Acad. Sci. USA 101(9), 2981-2986.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, Issue.9
, pp. 2981-2986
-
-
Tanay, A.1
Sharan, R.2
Kupiec, M.3
Shamir, R.4
-
22
-
-
11244306358
-
Discovering statistically significant biclusters in gene expression data
-
Tanay, A., Sharan, R., and Shamir, R. 2002. Discovering statistically significant biclusters in gene expression data. Bioinformatics 18(Suppl 1), 136-144.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
, pp. 136-144
-
-
Tanay, A.1
Sharan, R.2
Shamir, R.3
-
23
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov, R.L., Galperin, M.Y., Darren, A., Natale, A., and Koonin, E.V. 2000. The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucl. Acids Res. 28(1), 3336.
-
(2000)
Nucl. Acids Res.
, vol.28
, Issue.1
, pp. 3336
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Darren, A.3
Natale, A.4
Koonin, E.V.5
-
24
-
-
0034565517
-
A multiple alignment algorithm for metabolic pathway analysis using enzyme hierarchy
-
Tohsato, Y., Matsuda, H., and Hashimoto, A. 2000. A multiple alignment algorithm for metabolic pathway analysis using enzyme hierarchy. Proc. 8th Int. Conf. on Intelligent Systems for Molecular Biology (ISMB), 376-383.
-
(2000)
Proc. 8th Int. Conf. on Intelligent Systems for Molecular Biology (ISMB)
, pp. 376-383
-
-
Tohsato, Y.1
Matsuda, H.2
Hashimoto, A.3
-
25
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz, P., et al. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403(6770), 623-627.
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
-
26
-
-
18444400543
-
The protein information resource: An integrated public resource of functional annotation of proteins
-
Wu, C.H., et al. 2002. The protein information resource: An integrated public resource of functional annotation of proteins. Nucl. Acids Res. 30, 35-37.
-
(2002)
Nucl. Acids Res.
, vol.30
, pp. 35-37
-
-
Wu, C.H.1
-
27
-
-
0036088133
-
DIP, the database of interacting proteins: A research tool for studying cellular networks of protein interactions
-
Xenarios, I., et al. 2002. DIP, the database of interacting proteins: A research tool for studying cellular networks of protein interactions. Nucl. Acids Res. 30, 303-305.
-
(2002)
Nucl. Acids Res.
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
|