-
1
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology. The Gene Ontology consortium
-
Ashburner,M. et al. (2000) Gene Ontology: Tool for the unification of biology. The Gene Ontology consortium. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
2
-
-
9144257886
-
The Pfam protein families database
-
Bateman,A. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32, D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
-
3
-
-
38549173606
-
The BioGRID interaction database: 2008 update
-
Database issue, D637-D640
-
Breitkreutz,B. et al. (2007) The BioGRID interaction database: 2008 update. Nucleic Acids Res., 36 (Database issue): D637-D640
-
(2007)
Nucleic Acids Res
, vol.36
-
-
Breitkreutz, B.1
-
4
-
-
49549098123
-
The Gene Ontology Annotation (GOA) Database: Sharing Biological Knowledge with GO
-
Mulder,N. and Apweiler,R, eds, Nova Science Publishers, pp
-
Camon,E. et al. (2006) The Gene Ontology Annotation (GOA) Database: Sharing Biological Knowledge with GO. In Mulder,N. and Apweiler,R. (eds) Silico Genomics and Proteomics: Functional Annotation of Genomes and Proteins. Nova Science Publishers, pp. 37-54.
-
(2006)
Silico Genomics and Proteomics: Functional Annotation of Genomes and Proteins
, pp. 37-54
-
-
Camon, E.1
-
5
-
-
0036799752
-
Inferring domain-domain interactions from protein-protein interactions
-
Deng,M. et al. (2002) Inferring domain-domain interactions from protein-protein interactions. Genome Res., 12, 1540-1548.
-
(2002)
Genome Res
, vol.12
, pp. 1540-1548
-
-
Deng, M.1
-
6
-
-
25444491954
-
A protein domain interaction interface database: Interpare
-
Gong,S. et al. (2005) A protein domain interaction interface database: Interpare. BMC Bioinformatics, 6, 207.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 207
-
-
Gong, S.1
-
8
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein interaction network
-
Han,J.-D.J. et al. (2004) Evidence for dynamically organized modularity in the yeast protein interaction network. Nature, 430, 88-93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.-D.J.1
-
10
-
-
13444304365
-
Integr8 and genome reviews: Integrated views of complete genomes and proteomes
-
Kersey,P. et al. (2005) Integr8 and genome reviews: Integrated views of complete genomes and proteomes. Nucleic Acids Res., 33 297-302.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 297-302
-
-
Kersey, P.1
-
11
-
-
33846194268
-
Detecting conserved interaction patterns in biological networks
-
Koyutürk,M. et al. (2006) Detecting conserved interaction patterns in biological networks. J. Comput. Biol., 13, 1299-1322.
-
(2006)
J. Comput. Biol
, vol.13
, pp. 1299-1322
-
-
Koyutürk, M.1
-
12
-
-
9444239213
-
A probabilistic functional network of yeast genes
-
Lee,I. et al. (2004) A probabilistic functional network of yeast genes. Science, 306, 1555-1558.
-
(2004)
Science
, vol.306
, pp. 1555-1558
-
-
Lee, I.1
-
13
-
-
0005180705
-
An information-theoretic definition of similarity
-
Morgan Kaufmann, San Francisco, CA, pp
-
Lin,D. (1998) An information-theoretic definition of similarity. In Proceedings of the 15th International Conference on Machine Learning. Morgan Kaufmann, San Francisco, CA, pp. 296-304.
-
(1998)
Proceedings of the 15th International Conference on Machine Learning
, pp. 296-304
-
-
Lin, D.1
-
14
-
-
0037480738
-
Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
-
Lord,P. et al. (2003) Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation. Bioinformatics, 19, 1275-1283.
-
(2003)
Bioinformatics
, vol.19
, pp. 1275-1283
-
-
Lord, P.1
-
15
-
-
0037250151
-
InterDom: A database of putative interacting protein domains for validating predicted protein interactions and complexes
-
Ng,S. et al. (2003) InterDom: A database of putative interacting protein domains for validating predicted protein interactions and complexes. Nucleic Acids Res., 31, 251-254.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 251-254
-
-
Ng, S.1
-
16
-
-
38549154992
-
DOMINE: A database of protein domain interactions
-
Database issue, D656-D661
-
Raghavachari,B. et al. (2007) DOMINE: A database of protein domain interactions. Nucleic Acids Res., 36 (Database issue): D656-D661.
-
(2007)
Nucleic Acids Res
, vol.36
-
-
Raghavachari, B.1
-
18
-
-
34548084807
-
Inferring protein domain interactions from databases of interacting proteins
-
Riley,R. et al. (2005) Inferring protein domain interactions from databases of interacting proteins. Genome Biol., 6, R89.
-
(2005)
Genome Biol
, vol.6
-
-
Riley, R.1
-
19
-
-
34248576303
-
Functional evaluation of domain-domain interactions and human protein interaction networks
-
Schlicker,A. et al. (2007) Functional evaluation of domain-domain interactions and human protein interaction networks. Bioinformatics 23, 859-865.
-
(2007)
Bioinformatics
, vol.23
, pp. 859-865
-
-
Schlicker, A.1
-
20
-
-
0036228634
-
Predicting gene ontology functions from ProDom and CDD protein domains
-
Schug,J. et al. (2002) Predicting gene ontology functions from ProDom and CDD protein domains. Genome Res., 12, 648-655.
-
(2002)
Genome Res
, vol.12
, pp. 648-655
-
-
Schug, J.1
-
21
-
-
30344446931
-
Correlation between gene expression and GO semantic similarity
-
Sevilla,J. et al. (2005) Correlation between gene expression and GO semantic similarity. IEEE/ACM Trans. Comput. Biol. Bioinform., 2, 330-338.
-
(2005)
IEEE/ACM Trans. Comput. Biol. Bioinform
, vol.2
, pp. 330-338
-
-
Sevilla, J.1
-
22
-
-
33947252154
-
Network-based prediction of protein function
-
Sharan,R. et al. (2007) Network-based prediction of protein function. Mol. Syst. Biol., 3, 88.
-
(2007)
Mol. Syst. Biol
, vol.3
, pp. 88
-
-
Sharan, R.1
-
23
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
Spirin,V. and Mirny,L.A. (2003) Protein complexes and functional modules in molecular networks. Proc. Natl Acad. Sci. USA, 100, 12123-12128.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.A.2
-
24
-
-
23744481400
-
-
Titz,B. et al. (2004) What do we learn from high-throughput protein interaction data? Expert Rev. Proteomics, 1, 111-121.
-
Titz,B. et al. (2004) What do we learn from high-throughput protein interaction data? Expert Rev. Proteomics, 1, 111-121.
-
-
-
-
25
-
-
33746647771
-
Topology and weights in a protein domain interaction network-a novel way to predict protein interactions
-
Wuchty,S. (2006) Topology and weights in a protein domain interaction network-a novel way to predict protein interactions. BMC Genomics, 7, 122.
-
(2006)
BMC Genomics
, vol.7
, pp. 122
-
-
Wuchty, S.1
|