-
1
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology. the Gene Ontology consortium
-
Ashburner,M. et al. (2000) Gene Ontology: Tool for the unification of biology. the Gene Ontology consortium. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
2
-
-
0029062019
-
Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors and gene regulators
-
Comparative Study
-
Bongaerts,J. et al. (1995) Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors and gene regulators. Mol. Microbiol., 16, 521-534. Comparative Study.
-
(1995)
Mol. Microbiol
, vol.16
, pp. 521-534
-
-
Bongaerts, J.1
-
3
-
-
9144252016
-
The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with Gene Ontology
-
Camon,E. et al. (2004) The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with Gene Ontology. Nucleic. Acids. Res., 32, 262-266.
-
(2004)
Nucleic. Acids. Res
, vol.32
, pp. 262-266
-
-
Camon, E.1
-
4
-
-
0038652158
-
Spectra of random graphs with given expected degrees
-
Chung,F. et al. (2003) Spectra of random graphs with given expected degrees. Proc. Nail Acad. Sci. USA, 100, 6313-6318.
-
(2003)
Proc. Nail Acad. Sci. USA
, vol.100
, pp. 6313-6318
-
-
Chung, F.1
-
5
-
-
0000584511
-
The tail of the hypergeometric distribution
-
Chvátal,V. (1979) The tail of the hypergeometric distribution. Discrete Mathematics, 25, pp. 285-287.
-
(1979)
Discrete Mathematics
, vol.25
, pp. 285-287
-
-
Chvátal, V.1
-
7
-
-
0042665860
-
RcsCDB His-Asp phosphorelay system negatively regulates the flhDC operon in Escherichia coli
-
Francez-Charlot,A. et al. (2003) RcsCDB His-Asp phosphorelay system negatively regulates the flhDC operon in Escherichia coli. Mol Microbiol, 49, 823-832.
-
(2003)
Mol Microbiol
, vol.49
, pp. 823-832
-
-
Francez-Charlot, A.1
-
8
-
-
0033707946
-
Using bayesian networks to analyze expression data
-
Friedman,N. et al. (2000) Using bayesian networks to analyze expression data. J. Comput. Biol., 7, 601-620.
-
(2000)
J. Comput. Biol
, vol.7
, pp. 601-620
-
-
Friedman, N.1
-
9
-
-
33746655268
-
-
A GO-based method for assessing the biological plausibility of regulatory hypotheses, 2, pp
-
Gamalielsson,J. et al. (2006) A GO-based method for assessing the biological plausibility of regulatory hypotheses. In International Conference on Computational Science (2), pp. 879-886.
-
(2006)
International Conference on Computational Science
, pp. 879-886
-
-
Gamalielsson, J.1
-
10
-
-
33745622100
-
-
An improved statistic for detecting over-represented gene ontology annotations in gene sets In
-
Grossmann,S. et al. (2006) An improved statistic for detecting over-represented gene ontology annotations in gene sets In RECOMB'06 pp. 85-98.
-
(2006)
RECOMB'06
, pp. 85-98
-
-
Grossmann, S.1
-
11
-
-
0027965030
-
Regulated expression in vitro of genes coding for formate hydrogenlyase components of Escherichia coli
-
Hopper,S. et al. (1994) Regulated expression in vitro of genes coding for formate hydrogenlyase components of Escherichia coli. J. Biol. Chem., 269, 19597-19604.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 19597-19604
-
-
Hopper, S.1
-
12
-
-
23144442351
-
VAMPIRE microarray suite: A web-based platform for the interpretation of gene expression data
-
Hsiao,A. et al. (2005) VAMPIRE microarray suite: A web-based platform for the interpretation of gene expression data. Nucleic. Acids. Res., 33, W627-W632.
-
(2005)
Nucleic. Acids. Res
, vol.33
-
-
Hsiao, A.1
-
13
-
-
0344464762
-
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic bayesian networks
-
Husmeier,D. (2003) Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic bayesian networks. Bioinformatics, 19, 2271-2282.
-
(2003)
Bioinformatics
, vol.19
, pp. 2271-2282
-
-
Husmeier, D.1
-
14
-
-
42749099345
-
Subgraphs in random networks
-
Itzkovitz,S. et al. (2003) Subgraphs in random networks. Physical Review E, 68, 026127.
-
(2003)
Physical Review E
, vol.68
, pp. 026127
-
-
Itzkovitz, S.1
-
15
-
-
41349096849
-
Comment on 'Subgraphs in random networks'
-
King,O.D. (2004) Comment on 'Subgraphs in random networks'. Physical Review E, 70, 058101.
-
(2004)
Physical Review E
, vol.70
, pp. 058101
-
-
King, O.D.1
-
16
-
-
0033892931
-
H-NS-Dependent regulation of flagellar synthesis is mediated by a LysR family protein
-
Ko,M. and Park,C. (2000) H-NS-Dependent regulation of flagellar synthesis is mediated by a LysR family protein. J. Bacteriol., 182, 4670-4672.
-
(2000)
J. Bacteriol
, vol.182
, pp. 4670-4672
-
-
Ko, M.1
Park, C.2
-
17
-
-
33646016490
-
Assessing significance of connectivity and conservation in protein interaction networks
-
Koyutürk,M. et al. (2006a) Assessing significance of connectivity and conservation in protein interaction networks. In RECOMB'06, pp. 45-59.
-
(2006)
RECOMB'06
, pp. 45-59
-
-
Koyutürk, M.1
-
18
-
-
33846194268
-
Detecting conserved interaction patterns in biological networks
-
Koyutürk,M. et al. (2006b) Detecting conserved interaction patterns in biological networks. J. Comput. Biol., 13, 1299-1322.
-
(2006)
J. Comput. Biol
, vol.13
, pp. 1299-1322
-
-
Koyutürk, M.1
-
19
-
-
0037174671
-
Transcriptional regulatory networks in S. cerevisiae
-
Lee,T.I. et al. (2002) Transcriptional regulatory networks in S. cerevisiae. Science, 298, 799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
-
20
-
-
0036068774
-
-
Lehnen,D. et al. (2002) LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in E. coli. Mol. Microbiol., 45, 521-532. Comparative Study.
-
Lehnen,D. et al. (2002) LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in E. coli. Mol. Microbiol., 45, 521-532. Comparative Study.
-
-
-
-
21
-
-
0028132187
-
The FlhD/FlhC complex, a transcriptional activator of the E. coil flagellar class II operons
-
Liu,X. and Matsumura,P. (1994) The FlhD/FlhC complex, a transcriptional activator of the E. coil flagellar class II operons. J. Bacteriol. 176, 7345-7351.
-
(1994)
J. Bacteriol
, vol.176
, pp. 7345-7351
-
-
Liu, X.1
Matsumura, P.2
-
22
-
-
0036267328
-
The molybdate-responsive E.coli ModE transcriptional regulator coordinates periplasmic nitrate reductase (nap) operon expression with nitrate and molybdate availability
-
McNicholas,P.M. and Gunsalus,R.P. (2002) The molybdate-responsive E.coli ModE transcriptional regulator coordinates periplasmic nitrate reductase (nap) operon expression with nitrate and molybdate availability. J. Bacteriol., 184, 3253-3259.
-
(2002)
J. Bacteriol
, vol.184
, pp. 3253-3259
-
-
McNicholas, P.M.1
Gunsalus, R.P.2
-
23
-
-
0030614756
-
Characterization of the ModE DNA-binding sites in the control regions of modABCD and moaABCDE of Escherichia coil
-
McNicholas,P.M. et al. (1997) Characterization of the ModE DNA-binding sites in the control regions of modABCD and moaABCDE of Escherichia coil Mol. Microbiol., 23, 515-524.
-
(1997)
Mol. Microbiol
, vol.23
, pp. 515-524
-
-
McNicholas, P.M.1
-
24
-
-
0037084067
-
Transcriptional regulation of fis operon involves a module of multiple coupled promoters
-
Nasser,W. et al. (2002) Transcriptional regulation of fis operon involves a module of multiple coupled promoters. EMBO J., 21 715-724.
-
(2002)
EMBO J
, vol.21
, pp. 715-724
-
-
Nasser, W.1
-
25
-
-
32544461820
-
Microarray analysis of gene regulation by oxygen, nitrate, nitrite, FNR, NarL and NarP during anaerobic growth of Escherichia coli: New insights into microbial physiology
-
Overton,T.W. et al. (2006) Microarray analysis of gene regulation by oxygen, nitrate, nitrite, FNR, NarL and NarP during anaerobic growth of Escherichia coli: New insights into microbial physiology. Biochem. Soc. Trans., 34, 104-7.
-
(2006)
Biochem. Soc. Trans
, vol.34
, pp. 104-107
-
-
Overton, T.W.1
-
26
-
-
33644873438
-
-
Salgado,H. et al, 2006) RegulonDB version 5.0, E. coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic. Acids. Res, 34, D394-D397
-
Salgado,H. et al. (2006) RegulonDB (version 5.0): E. coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic. Acids. Res., 34, D394-D397.
-
-
-
-
27
-
-
0032949461
-
Transcriptional regulation of molybdoenzyme synthesis in E. coli in response to molybdenum: ModE-molybdate, a repressor of the modABCD (molybdate transport) operon is a secondary transcriptional activator for the hyc and nar operons
-
Self, W.T. et al. (1999) Transcriptional regulation of molybdoenzyme synthesis in E. coli in response to molybdenum: ModE-molybdate, a repressor of the modABCD (molybdate transport) operon is a secondary transcriptional activator for the hyc and nar operons. Microbiology, 145, 41-55.
-
(1999)
Microbiology
, vol.145
, pp. 41-55
-
-
Self, W.T.1
-
28
-
-
0036889035
-
Regulation of the hydrogenase-4 operon of E. coli by the sigma(54)-dependent transcriptional activators FhlA and HyfR
-
Skibinski,D.A.G. et al. (2002) Regulation of the hydrogenase-4 operon of E. coli by the sigma(54)-dependent transcriptional activators FhlA and HyfR. J. Bacteriol., 184, 6642-6653.
-
(2002)
J. Bacteriol
, vol.184
, pp. 6642-6653
-
-
Skibinski, D.A.G.1
-
29
-
-
27744521471
-
Global gene expression analysis revealed an unsuspected den operon under the control of molybdate sensor, ModE protein, in E. coil
-
Tao,H. et al. (2005) Global gene expression analysis revealed an unsuspected den operon under the control of molybdate sensor, ModE protein, in E. coil. Arch. Microbiol., 184, 225-33.
-
(2005)
Arch. Microbiol
, vol.184
, pp. 225-233
-
-
Tao, H.1
-
30
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
Tong,A.H.Y. et al. (2004) Global mapping of the yeast genetic interaction network. Science, 303, 808-813.
-
(2004)
Science
, vol.303
, pp. 808-813
-
-
Tong, A.H.Y.1
-
31
-
-
0033395596
-
Growth phase-dependent regulation of nuoA-N expression in E. coli K-12 by the Fis protein: Upstream binding sites and bioenergetic significance
-
Wackwitz,B. et al. (1999) Growth phase-dependent regulation of nuoA-N expression in E. coli K-12 by the Fis protein: Upstream binding sites and bioenergetic significance. Mol. Gen. Genet., 262, 876-883.
-
(1999)
Mol. Gen. Genet
, vol.262
, pp. 876-883
-
-
Wackwitz, B.1
|