-
1
-
-
0037480738
-
Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
-
12835272
-
Lord P Stevens R Brass A Goble C Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation Bioinformatics 2003, 19(10):1275-83. 12835272
-
(2003)
Bioinformatics
, vol.19
, Issue.10
, pp. 1275-1283
-
-
Lord, P.1
Stevens, R.2
Brass, A.3
Goble, C.4
-
2
-
-
33645018580
-
An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse
-
1403805 16438730
-
Kim R Ji J Wong W An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse BMC Bioinformatics 2006, 7:44. 1403805 16438730
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 44
-
-
Kim, R.1
Ji, J.2
Wong, W.3
-
3
-
-
0035733690
-
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
-
11694880
-
Ge H Liu Z Church G Vidal M Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae Nat Genet 2001, 29(4):482-486. 11694880
-
(2001)
Nat Genet
, vol.29
, Issue.4
, pp. 482-486
-
-
Ge, H.1
Liu, Z.2
Church, G.3
Vidal, M.4
-
4
-
-
25444472879
-
Confirmation of human protein interaction data by human expression data
-
1127109 15877815
-
Hahn A Rahnenführer J Talwar P Lengauer T Confirmation of human protein interaction data by human expression data BMC Bioinformatics 2005, 6:112. 1127109 15877815
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 112
-
-
Hahn, A.1
Rahnenführer, J.2
Talwar, P.3
Lengauer, T.4
-
5
-
-
0142052944
-
A Bayesian networks approach for predicting protein-protein interactions from genomic data
-
5644 14564010
-
Jansen R Yu H Greenbaum D Kluger Y Krogan NJ Chung S Emili A Snyder M Greenblatt JF Gerstein M A Bayesian networks approach for predicting protein-protein interactions from genomic data Science 2003:302. 5644 14564010
-
(2003)
Science
, vol.302
-
-
Jansen, R.1
Yu, H.2
Greenbaum, D.3
Kluger, Y.4
Krogan, N.J.5
Chung, S.6
Emili, A.7
Snyder, M.8
Greenblatt, J.F.9
Gerstein, M.10
-
6
-
-
13244284551
-
Dynamic complex formation during the yeast cell cycle
-
5710 15692050
-
de Lichtenberg U Jensen L Brunak S Bork P Dynamic complex formation during the yeast cell cycle Science 2005:307. 5710 15692050
-
(2005)
Science
, vol.307
-
-
de Lichtenberg, U.1
Jensen, L.2
Brunak, S.3
Bork, P.4
-
7
-
-
4644326931
-
Genomic analysis of regulatory network dynamics reveals large topological changes
-
7006 15372033
-
Luscombe N Babu M Yu H Snyder M Teichmann S Gerstein M Genomic analysis of regulatory network dynamics reveals large topological changes Nature 2004:431. 7006 15372033
-
(2004)
Nature
, vol.431
-
-
Luscombe, N.1
Babu, M.2
Yu, H.3
Snyder, M.4
Teichmann, S.5
Gerstein, M.6
-
8
-
-
28444448000
-
Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues
-
16188928
-
Wachi S Yoneda K Wu R Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues Bioinformatics 2005, 21(23):4205-4208. 16188928
-
(2005)
Bioinformatics
, vol.21
, Issue.23
, pp. 4205-4208
-
-
Wachi, S.1
Yoneda, K.2
Wu, R.3
-
9
-
-
20344379457
-
Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli
-
1142363 15908506
-
Balazsi G Barabasi A Olvai Z Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli PNAS 2005, 102(22):7841-7846. 1142363 15908506
-
(2005)
PNAS
, vol.102
, Issue.22
, pp. 7841-7846
-
-
Balazsi, G.1
Barabasi, A.2
Olvai, Z.3
-
10
-
-
75949121397
-
Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data
-
London, UK: Springer-Verlag
-
van Helden J Gilbert D Wernisch L Schroeder M Wodak S Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data Proc JOBIM '00 London, UK: Springer-Verlag 2000, 147-164.
-
(2000)
Proc JOBIM '00
, pp. 147-164
-
-
van Helden, J.1
Gilbert, D.2
Wernisch, L.3
Schroeder, M.4
Wodak, S.5
-
13
-
-
0036369840
-
Genome-wide pathway analysis and visualization using gene expression data
-
Springer-Verlag
-
Kurhekar M Adak S Jhunjhunwala S Raghupathy K Genome-wide pathway analysis and visualization using gene expression data Proc PSB '02 Springer-Verlag 2002, 462-73.
-
(2002)
Proc PSB '02
, pp. 462-473
-
-
Kurhekar, M.1
Adak, S.2
Jhunjhunwala, S.3
Raghupathy, K.4
-
14
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
102409 10592173
-
Kanehisa M Goto S KEGG: Kyoto encyclopedia of genes and genomes Nucleic Acids Res 2000, 28:27-30. 102409 10592173
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
15
-
-
0036141992
-
Relating whole-genome expression data with protein-protein interactions
-
155252 11779829
-
Jansen R Greenbaum D Gerstein M Relating whole-genome expression data with protein-protein interactions Genome Research 2002, 12:37-46. 155252 11779829
-
(2002)
Genome Research
, vol.12
, pp. 37-46
-
-
Jansen, R.1
Greenbaum, D.2
Gerstein, M.3
-
16
-
-
14644436209
-
Extracting active pathways from gene expression data
-
14534196
-
Vert J Kanehisa M Extracting active pathways from gene expression data Bioinformatics 2003, 19:II238-II244. 14534196
-
(2003)
Bioinformatics
, vol.19
-
-
Vert, J.1
Kanehisa, M.2
-
17
-
-
0038014879
-
Co-clustering of biological networks and gene expression data
-
12169542
-
Hanisch D Zien A Zimmer R Lengauer T Co-clustering of biological networks and gene expression data Bioinformatics 2002, 18:S145-54. 12169542
-
(2002)
Bioinformatics
, vol.18
-
-
Hanisch, D.1
Zien, A.2
Zimmer, R.3
Lengauer, T.4
-
18
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
24541 9843981
-
Eisen MB Spellman PT Brown PO Botstein D Cluster analysis and display of genome-wide expression patterns PNAS 1998, 95:14863-14868. 24541 9843981
-
(1998)
PNAS
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
19
-
-
0000801240
-
Discovering regulatory and signalling circuits in molecular interaction networks
-
12169552
-
Ideker T Ozier O Schwikowski B Siegel AF Discovering regulatory and signalling circuits in molecular interaction networks Bioinformatics 2002, 18:S233-S240. 12169552
-
(2002)
Bioinformatics
, vol.18
-
-
Ideker, T.1
Ozier, O.2
Schwikowski, B.3
Siegel, A.F.4
-
20
-
-
20844450402
-
Differential network expression during drug and stress response
-
15840709
-
Cabusora L Sutton E Fulmer A Forst C Differential network expression during drug and stress response Bioinformatics 2005, 21(12):2898-2905. 15840709
-
(2005)
Bioinformatics
, vol.21
, Issue.12
, pp. 2898-2905
-
-
Cabusora, L.1
Sutton, E.2
Fulmer, A.3
Forst, C.4
-
21
-
-
0842309161
-
Discovering molecular pathways from protein interaction and gene expression data
-
12855469
-
Segal E Wang H Koller D Discovering molecular pathways from protein interaction and gene expression data Bioinformatics 2003, 19(Suppl 1):i264-71. 12855469
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Segal, E.1
Wang, H.2
Koller, D.3
-
22
-
-
0346095291
-
Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae
-
14647306
-
Ihmels J Levy R Barkai N Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae Nat Biotechnol 2003, 22:86-92. 14647306
-
(2003)
Nat Biotechnol
, vol.22
, pp. 86-92
-
-
Ihmels, J.1
Levy, R.2
Barkai, N.3
-
23
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
16169070
-
Stelzl U Worm U Lalowski M Haenig C Brembeck FH Goehler H Stroedicke M Zenkner M Schoenherr A Koeppen S Timm J Mintzlaff S Abraham C Bock N Kietzmann S Goedde A Toksoz E Droege A Krobitsch S Korn B Birchmeier W Lehrach H Wanker EE A human protein-protein interaction network: A resource for annotating the proteome Cell 2005, 122(6):957-968. 16169070
-
(2005)
Cell
, vol.122
, Issue.6
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.H.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
Timm, J.11
Mintzlaff, S.12
Abraham, C.13
Bock, N.14
Kietzmann, S.15
Goedde, A.16
Toksoz, E.17
Droege, A.18
Krobitsch, S.19
Korn, B.20
Birchmeier, W.21
Lehrach, H.22
Wanker, E.E.23
more..
-
24
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
16189514
-
Rual JF Venkatesan K Hao T Hirozane-Kishikawa T Dricot A Li N Berriz GF Gibbons FD Dreze M Ayivi-Guedehoussou N Klitgord N Simon C Boxem M Milstein S Rosenberg J Goldberg DS Zhang LV Wong SL Franklin G Li S Albala JS Lim J Fraughton C Llamosas E Cevik S Bex C Lamesch P Sikorski RS Vandenhaute J Zoghbi HY Smolyar A Bosak S Sequerra R Doucette-Stamm L Cusick ME Hill DE Roth FP Vidal M Towards a proteome-scale map of the human protein-protein interaction network Nature 2005, 437(7062):1173-1178. 16189514
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
Klitgord, N.11
Simon, C.12
Boxem, M.13
Milstein, S.14
Rosenberg, J.15
Goldberg, D.S.16
Zhang, L.V.17
Wong, S.L.18
Franklin, G.19
Li, S.20
Albala, J.S.21
Lim, J.22
Fraughton, C.23
Llamosas, E.24
Cevik, S.25
Bex, C.26
Lamesch, P.27
Sikorski, R.S.28
Vandenhaute, J.29
Zoghbi, H.Y.30
Smolyar, A.31
Bosak, S.32
Sequerra, R.33
Doucette-Stamm, L.34
Cusick, M.E.35
Hill, D.E.36
Roth, F.P.37
Vidal, M.38
more..
-
25
-
-
28444460297
-
Global analysis of protein phosphorylation in yeast
-
16319894
-
Ptacek J Devgan G Michaud G Zhu H Zhu X Fasolo J Guo H Jona G Breitkreutz A Sopko R McCartney RE Schmidt MC Rachidi N Lee SJ Mah AS Meng L Stark MJ Stern DF De Virgilio C Tyers M Andrews B Gerstein M Schweitzer B Predki PF Snyder M Global analysis of protein phosphorylation in yeast Nature 2005, 438(7068):679-84. 16319894
-
(2005)
Nature
, vol.438
, Issue.7068
, pp. 679-684
-
-
Ptacek, J.1
Devgan, G.2
Michaud, G.3
Zhu, H.4
Zhu, X.5
Fasolo, J.6
Guo, H.7
Jona, G.8
Breitkreutz, A.9
Sopko, R.10
McCartney, R.E.11
Schmidt, M.C.12
Rachidi, N.13
Lee, S.J.14
Mah, A.S.15
Meng, L.16
Stark, M.J.17
Stern, D.F.18
De Virgilio, C.19
Tyers, M.20
Andrews, B.21
Gerstein, M.22
Schweitzer, B.23
Predki, P.F.24
Snyder, M.25
more..
-
26
-
-
0742288061
-
Unique and redundant roles for Hog MAPK pathway components as revealed by whole-genome expression analysis
-
329229 14595107
-
O'Rourke S Herskowitz I Unique and redundant roles for Hog MAPK pathway components as revealed by whole-genome expression analysis Mol Biol Cell 2004, 15:532-42. 329229 14595107
-
(2004)
Mol Biol Cell
, vol.15
, pp. 532-542
-
-
O'Rourke, S.1
Herskowitz, I.2
-
27
-
-
0034565041
-
CLICK: A clustering algorithm with applications to gene expression analysis
-
AAAI Press 10977092
-
Sharan R Shamir R CLICK: A clustering algorithm with applications to gene expression analysis Proc Int Conf Intell Syst Mol Biol AAAI Press; 2000 8 307-316. 10977092
-
(2000)
Proc Int Conf Intell Syst Mol Biol
, vol.8
, pp. 307-316
-
-
Sharan, R.1
Shamir, R.2
-
28
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
9623998
-
Watts DJ Strogatz SH Collective dynamics of 'small-world' networks Nature 1998, 393(6684):440-442. 9623998
-
(1998)
Nature
, vol.393
, Issue.6684
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
29
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
10802651
-
Ashburner M Ball C Blake J Botstein D Butler H Cherry J Davis A Dolinski K Dwight S Jea Eppig Gene ontology: Tool for the unification of biology Nature Genetics 2000, 25:25-29. 10802651
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.2
Blake, J.3
Botstein, D.4
Butler, H.5
Cherry, J.6
Davis, A.7
Dolinski, K.8
Dwight, S.9
Jea Eppig10
-
30
-
-
0036081347
-
MIPS: A database for genomes and protein sequences
-
99165 11752246
-
Mewes HW Frishman D Guldener U Mannhaupt G Mayer K Mokrejs M Morgenstern B Munsterkotter M Rudd S Weil B MIPS: A database for genomes and protein sequences Nucleic Acids Res 2002, 30(1):31-4. 99165 11752246
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.1
, pp. 31-34
-
-
Mewes, H.W.1
Frishman, D.2
Guldener, U.3
Mannhaupt, G.4
Mayer, K.5
Mokrejs, M.6
Morgenstern, B.7
Munsterkotter, M.8
Rudd, S.9
Weil, B.10
-
31
-
-
27644464861
-
EXPANDER: An integrative suite for microarray data analysis
-
1261157 16176576
-
Shamir R Maron-Katz A Tanay A Linhart C Steinfeld I Sharan R Shiloh Y Elkon R EXPANDER: An integrative suite for microarray data analysis BMC Bioinformatics 2005, 6(232). 1261157 16176576
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.232
-
-
Shamir, R.1
Maron-Katz, A.2
Tanay, A.3
Linhart, C.4
Steinfeld, I.5
Sharan, R.6
Shiloh, Y.7
Elkon, R.8
-
32
-
-
0036282743
-
Osmotic stress signaling and osmoadaptation in yeasts
-
120784 12040128
-
Hohmann S Osmotic stress signaling and osmoadaptation in yeasts Microbiol Mol Biol Rev 2002, 66(2):300-72. 120784 12040128
-
(2002)
Microbiol Mol Biol Rev
, vol.66
, Issue.2
, pp. 300-372
-
-
Hohmann, S.1
-
33
-
-
0032530170
-
The Hog1 MAPK prevents cross talk between the HOG and pheromone response MAPK pathways in Saccharomyces cerevisiae
-
317168 9744864
-
O'Rourke SM Herskowitz I The Hog1 MAPK prevents cross talk between the HOG and pheromone response MAPK pathways in Saccharomyces cerevisiae Genes Dev 1998, 12(18):2874-2886. 317168 9744864
-
(1998)
Genes Dev
, vol.12
, Issue.18
, pp. 2874-2886
-
-
O'Rourke, S.M.1
Herskowitz, I.2
-
34
-
-
33644834147
-
Pyridoxine is required for post-embryonic root development and tolerance to osmotic and oxidative stresses
-
16236150
-
Chen H Xiong L Pyridoxine is required for post-embryonic root development and tolerance to osmotic and oxidative stresses Plant Journal 2005, 44(3):396-408. 16236150
-
(2005)
Plant Journal
, vol.44
, Issue.3
, pp. 396-408
-
-
Chen, H.1
Xiong, L.2
-
35
-
-
0038444122
-
Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells
-
430898 12727897
-
Elkon R Linhart C Sharan R Shamir R Shiloh Y Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells Genome Research 2003, 13(5):773-780. 430898 12727897
-
(2003)
Genome Research
, vol.13
, Issue.5
, pp. 773-780
-
-
Elkon, R.1
Linhart, C.2
Sharan, R.3
Shamir, R.4
Shiloh, Y.5
-
36
-
-
0034076869
-
Two regulators of Ste12p inhibit pheromone-responsive transcription by separate mechanisms
-
85789 10825185
-
Olson KA Nelson C Tai G Hung W Yong C Astell C Sadowski I Two regulators of Ste12p inhibit pheromone-responsive transcription by separate mechanisms Mol Cell Biol 2000, 20(12):4199-209. 85789 10825185
-
(2000)
Mol Cell Biol
, vol.20
, Issue.12
, pp. 4199-4209
-
-
Olson, K.A.1
Nelson, C.2
Tai, G.3
Hung, W.4
Yong, C.5
Astell, C.6
Sadowski, I.7
-
37
-
-
0029879360
-
The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE)
-
450147 8641288
-
Martinez-Pastor MT Marchler G Schuller C Marchler-Bauer A Ruis H Estruch F The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE) EMBO J 1996, 15(9). 450147 8641288
-
(1996)
EMBO J
, vol.15
, Issue.9
-
-
Martinez-Pastor, M.T.1
Marchler, G.2
Schuller, C.3
Marchler-Bauer, A.4
Ruis, H.5
Estruch, F.6
-
38
-
-
0035985177
-
Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumors
-
117619 12058064
-
Whitfield ML Sherlock G Saldanha AJ Murray JI Ball CA Alexander KE Matese JC Perou CM Hurt MM Brown PO Botstein D Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumors Molecular Biology of the Cell 2002, 13:1977-2000. 117619 12058064
-
(2002)
Molecular Biology of the Cell
, vol.13
, pp. 1977-2000
-
-
Whitfield, M.L.1
Sherlock, G.2
Saldanha, A.J.3
Murray, J.I.4
Ball, C.A.5
Alexander, K.E.6
Matese, J.C.7
Perou, C.M.8
Hurt, M.M.9
Brown, P.O.10
Botstein, D.11
-
39
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
6 16429126
-
Gavin AC Aloy P Grandi P Krause R Boesche M Marzioch M Rau C Jensen LJ Bastuck S Dumpelfeld B Edelmann A Heurtier MA Hoffman V Hoefert C Klein K Hudak M Michon AM Schelder M Schirle M Remor M Rudi T Hooper S Bauer A Bouwmeester T Casari G Drewes G Neubauer G Rick JM Kuster B Bork P Russell RB Superti-Furga G Proteome survey reveals modularity of the yeast cell machinery Nature 2006, 440:7084-631. 6 16429126
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
Edelmann, A.11
Heurtier, M.A.12
Hoffman, V.13
Hoefert, C.14
Klein, K.15
Hudak, M.16
Michon, A.M.17
Schelder, M.18
Schirle, M.19
Remor, M.20
Rudi, T.21
Hooper, S.22
Bauer, A.23
Bouwmeester, T.24
Casari, G.25
Drewes, G.26
Neubauer, G.27
Rick, J.M.28
Kuster, B.29
Bork, P.30
Russell, R.B.31
Superti-Furga, G.32
more..
-
40
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
16554755
-
Krogan NJ Cagney G Yu H Zhong G Guo X Ignatchenko A Li J Pu S Datta N Tikuisis AP Punna T Peregrin-Alvarez JM Shales M Zhang X Davey M Robinson MD Paccanaro A Bray JE Sheung A Beattie B Richards DP Canadien V Lalev A Mena F Wong P Starostine A Canete MM Vlasblom J Wu S Orsi C Collins SR Chandran S Haw R Rilstone JJ Gandi K Thompson NJ Musso G St Onge P Ghanny S Lam MH Butland G Altaf-Ul AM Kanaya S Shilatifard A O'Shea E Weissman JS Ingles CJ Hughes TR Parkinson J Gerstein M Wodak SJ Emili A Greenblatt JF Global landscape of protein complexes in the yeast Saccharomyces cerevisiae Nature 2006, 440(7084):637-643. 16554755
-
(2006)
Nature
, vol.440
, Issue.7084
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
Punna, T.11
Peregrin-Alvarez, J.M.12
Shales, M.13
Zhang, X.14
Davey, M.15
Robinson, M.D.16
Paccanaro, A.17
Bray, J.E.18
Sheung, A.19
Beattie, B.20
Richards, D.P.21
Canadien, V.22
Lalev, A.23
Mena, F.24
Wong, P.25
Starostine, A.26
Canete, M.M.27
Vlasblom, J.28
Wu, S.29
Orsi, C.30
Collins, S.R.31
Chandran, S.32
Haw, R.33
Rilstone, J.J.34
Gandi, K.35
Thompson, N.J.36
Musso, G.37
St Onge, P.38
Ghanny, S.39
Lam, M.H.40
Butland, G.41
Altaf-Ul, A.M.42
Kanaya, S.43
Shilatifard, A.44
O'Shea, E.45
Weissman, J.S.46
Ingles, C.J.47
Hughes, T.R.48
Parkinson, J.49
Gerstein, M.50
Wodak, S.J.51
Emili, A.52
Greenblatt, J.F.53
more..
-
41
-
-
0010656061
-
Exploring the protein interactome using comprehensive two-hybrid projects
-
11780966
-
Ito T Chiba T Yoshida M Exploring the protein interactome using comprehensive two-hybrid projects Trends Biotechnol 2001, 19:S23-S27. 11780966
-
(2001)
Trends Biotechnol
, vol.19
-
-
Ito, T.1
Chiba, T.2
Yoshida, M.3
-
42
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
11805837
-
Ho Y Gruhler A Heilbut A Bader GD Moore L Adams SL Millar A Taylor P Bennett K Boutilier K Yang L Wolting C Donaldson I Schandorff S Shewnarane J Vo M Taggart J Goudreault M Muskat B Alfarano C Dewar D Lin Z Michalickova K Willems AR Sassi H Nielsen PA Rasmussen KJ Andersen JR Johansen LE Hansen LH Jespersen H Podtelejnikov A Nielsen E Crawford J Poulsen V Sorensen BD Matthiesen J Hendrickson RG Gleeson F Pawson T Moran MF Durocher D Mann M Hogue CW Figeys D Tyers M Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Nature 2002, 415:180-3. 11805837
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.G.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.44
Figeys, D.45
Tyers, M.46
more..
-
43
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
10688190
-
Uetz P Giot L Cagney G Mansfield TA Judson R Knight JR Lockshon D Narayan V Srinivasan M Pochart P Qureshi-Emili A Li Y Godwin B Conover D Kalbfleisch T Vijayadamodar G Yang M Johnston M Fields S Rothberg JM A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae Nature 2000, 403(6770):623-7. 10688190
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emili, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
44
-
-
23844447959
-
Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data
-
16108720
-
Sharan R Ideker T Kelley B Shamir R Karp R Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data Journal of Computational Biology 2005, 12:835-846. 16108720
-
(2005)
Journal of Computational Biology
, vol.12
, pp. 835-846
-
-
Sharan, R.1
Ideker, T.2
Kelley, B.3
Shamir, R.4
Karp, R.5
-
46
-
-
84937435100
-
Greedy Approximation Algorithms for Finding Dense Components in a Graph
-
Charikar M Greedy Approximation Algorithms for Finding Dense Components in a Graph Lecture Notes in Computer Science 2000, 1913:84-95.
-
(2000)
Lecture Notes in Computer Science
, vol.1913
, pp. 84-95
-
-
Charikar, M.1
-
47
-
-
0031619858
-
Poly-logarithmic deterministic fully-dynamic algorithms for connectivity, minimum spanning tree, 2-edge, and biconnectivity
-
New York, NY, USA: ACM Press
-
Holm J de Lichtenberg K Thorup M Poly-logarithmic deterministic fully-dynamic algorithms for connectivity, minimum spanning tree, 2-edge, and biconnectivity Proc STOC '98 New York, NY, USA: ACM Press; 1998:79-89.
-
(1998)
Proc STOC '98
, pp. 79-89
-
-
Holm, J.1
de Lichtenberg, K.2
Thorup, M.3
-
48
-
-
0004201430
-
-
Potomac, Maryland: Computer Science Press
-
Even S Graph Algorithms Potomac, Maryland: Computer Science Press; 1979.
-
(1979)
Graph Algorithms
-
-
Even, S.1
-
49
-
-
4444268694
-
Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
-
15001476
-
Kashtan N Itzkovitz S Milo R Alon U Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs Bioinformatics 2004, 20(11):1746-58. 15001476
-
(2004)
Bioinformatics
, vol.20
, Issue.11
, pp. 1746-1758
-
-
Kashtan, N.1
Itzkovitz, S.2
Milo, R.3
Alon, U.4
-
50
-
-
38149042183
-
-
MATISSE web page http://www.cs.tau.ac.il/~rshamir/matisse/
-
MATISSE Web Page
-
-
|