A protein interaction network for Ecm29 links the 26 S proteasome to molecular motors and endosomal components

Journal of Biological Chemistry

Volumn 285, Issue 41, 2010, Pages 31616-31633

  Gorbea, Carlos ^a   Pratt, Gregory ^a   Ustrell, Vicença ^a   Bell, Russell ^b,c   Sahasrabudhe, Sudhir ^b   Hughes, Robert E ^b,d   Rechsteiner, Martin ^a  

^a UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

^b Prolexys Pharmaceuticals Inc   (United States)

^c UNIVERSITY OF UTAH   (United States)

^d BUCK INSTITUTE FOR RESEARCH ON AGING   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFOCAL MICROSCOPY; GLYCEROL; LINEAR MOTORS; MASS SPECTROMETRY;

26 S PROTEASOME; CAVEOLIN; CELLULAR COMPARTMENTS; CLATHRINS; ENDOCYTIC PROTEINS; ENDOSOMAL PROTEINS; ENDOSOMES; KINESINS; MOLECULAR MOTORS; N-TERMINALS; PROTEASOMES; PROTEIN INTERACTION NETWORKS; TWO-HYBRID SCREENS; UBIQUITIN;

PROTEINS;

BINDING PROTEIN; CAVEOLIN; CELL PROTEIN; CLATHRIN; ECM29 PROTEIN; KINESIN; MOLECULAR MOTOR; MYOSIN; PROTEASOME; PROTEIN FIP4; PROTEIN VPS11; RAB11 PROTEIN; RABAPTIN; UNCLASSIFIED DRUG; ATP DEPENDENT 26S PROTEASE; KIAA0368 PROTEIN, HUMAN; RAB PROTEIN; VESICULAR TRANSPORT PROTEIN; VPS11 PROTEIN, HUMAN;

AMINO TERMINAL SEQUENCE; ANIMAL CELL; ANIMAL CELL CULTURE; ARTICLE; BINDING AFFINITY; CARBOXY TERMINAL SEQUENCE; CELLULAR DISTRIBUTION; CONFOCAL MICROSCOPY; CONTROLLED STUDY; COUPLING FACTOR; EMBRYO; ENDOCYTOSIS; ENDOPLASMIC RETICULUM; ENDOSOME; HUMAN; HUMAN CELL; HUMAN TISSUE; MASS SPECTROMETRY; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN MODIFICATION; PROTEIN PROTEIN INTERACTION; TWO HYBRID SYSTEM; ANIMAL; GENETICS; HELA CELL LINE; METABOLISM;

ANIMALS; ENDOSOMES; HELA CELLS; HUMANS; MICE; MOLECULAR MOTOR PROTEINS; PROTEASOME ENDOPEPTIDASE COMPLEX; RAB GTP-BINDING PROTEINS; VESICULAR TRANSPORT PROTEINS;

EID: 77957817388     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.154120     Document Type: Article

References (103)

1. Hershko, A., and Ciechanover, A. (1998) Annu. Rev. Biochem. 67, 425-479
2. Glickman, M. H., and Ciechanover, A. (2002) Physiol. Rev. 82, 373-428
3. Ang, X. L., and Wade Harper, J. (2005) Oncogene. 24, 2860-2870
4. Sullivan, M., and Morgan, D. O. (2007) Nat. Rev. Mol. Cell. Biol. 8, 894-903
5. Muratani, M., and Tansey, W. P. (2003) Nat. Rev. Mol. Cell. Biol. 4, 192-201
6. Bour, G., Lalevée, S., and Rochette-Egly, C. (2007) Trends Cell Biol. 17, 302-309
7. Srinivasula, S. M., and Ashwell, J. D. (2008) Mol. Cell 30, 123-135
8. Virshup, D. M., and Forger, D. B. (2007) Cell 129, 857-859
9. Petroski, M. D., and Deshaies, R. J. (2005) Nat. Rev. Mol. Cell. Biol. 6, 9-20
10. Peters, J. M. (2002) Mol. Cell 9, 931-943
11. Rodrigo-Brenni, M. C., and Morgan, D. O. (2007) Cell 130, 127-139
12. Deshaies, R. J., and Joazeiro, C. A. (2009) Ann. Rev. Biochem. 78, 399-434
13. Ikeda, F., and Dikic, I. (2008) EMBO Rep. 9, 536-542
14. Xu, P., Duong, D. M., Seyfried, N. T., Cheng, D., Xie, Y., Robert, J., Rush, J., Hochstrasser, M., Finley, D., and Peng, J. (2009) Cell 137, 133-145
15. Pickart, C. M., and Cohen, R. E. (2004) Nat. Rev. Mol. Cell. Biol. 5, 177-187
16. Finley, D. (2009) Annu. Rev. Biochem. 78, 477-513
17. Borodovsky, A., Kessler, B. M., Casagrande, R., Overkleeft, H. S., Wilkinson, K. D., and Ploegh, H. L. (2001) EMBO J. 20, 5187-5196
18. Crosas, B., Hanna, J., Kirkpatrick, D. S., Zhang, D. P., Tone, Y., Hathaway, N. A., Buecker, C., Leggett, D. S., Schmidt, M., King, R. W., Gygi, S. P., and Finley, D. (2006) Cell 127, 1401-1413
19. Yao, T., Song, L., Xu, W., DeMartino, G. N., Florens, L., Swanson, S. K., Washburn, M. P., Conaway, R. C., Conaway, J. W., and Cohen, R. E. (2006) Nat. Cell Biol. 8, 994-1002
20. Reyes-Turcu, F. E., Ventii, K. H., and Wilkinson, K. D. (2009) Annu. Rev. Biochem. 78, 363-397
21. Xie, Y., and Varshavsky, A. (2002) Nat. Cell Biol. 4, 1003-1007
22. Ferrell, K., Wilkinson, C. R., Dubiel, W., and Gordon, C. (2000) Trends Biochem. Sci. 25, 83-88
23. Hartmann-Petersen, R., and Gordon, C. (2004) Curr. Biol. 14, R754-756
24. Hicke, L., Schubert, H. L., and Hill, C. P. (2005) Nat. Rev. Mol. Cell. Biol. 6, 610-621
25. Stanhill, A., Haynes, C. M., Zhang, Y., Min, G., Steele, M. C., Kalinina, J., Martinez, E., Pickart, C. M., Kong, X. P., and Ron, D. (2006) Mol. Cell 23, 875-885
26. Lussier, M., White, A. M., Sheraton, J., di Paolo, T., Treadwell, J., Southard, S. B., Horenstein, C. I., Chen-Weiner, J., Ram, A. F., Kapteyn, J. C., Roemer, T. W., Vo, D. H., Bondoc, D. C., Hall, J., Zhong, W. W., Sdicu, A. M., Davies, J., Klis, F. M., Robbins, P. W., and Bussey, H. (1997) Genetics 147, 435-450
27. Ho, Y., Gruhler, A., Heilbut, A., Bader, G. D., Moore, L., Adams, S. L., Millar, A., Taylor, P., Bennett, K., Boutilier, K., Yang, L., Wolting, C., Donaldson, I., Schandorff, S., Shewnarane, J., Vo, M., Taggart, J., Goudreault, M., Muskat, B., Alfarano, C., Dewar, D., Lin, Z., Michalickova, K., Willems, A. R., Sassi, H., Nielsen, P. A., Rasmussen, K. J., Andersen, J. R., Johansen, L. E., Hansen, L. H., Jespersen, H., Podtelejnikov, A., Nielsen, E., Crawford, J., Poulsen, V., Sørensen, B. D., Matthiesen, J., Hendrickson, R. C., Gleeson, F., Pawson, T., Moran, M. F., Durocher, D., Mann, M., Hogue, C. W., Figeys, D., and Tyers, M. (2002) Nature 415, 180-183
28. Gavin, A. C., Bösche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J. M., Michon, A. M., Cruciat, C. M., Remor, M., Höfert, C., Schelder, M., Brajenovic, M., Ruffner, H., Merino, A., Klein, K., Hudak, M., Dickson, D., Rudi, T., Gnau, V., Bauch, A., Bastuck, S., Huhse, B., Leutwein, C., Heurtier, M. A., Copley, R. R., Edelmann, A., Querfurth, E., Rybin, V., Drewes, G., Raida, M., Bouwmeester, T., Bork, P., Seraphin, B., Kuster, B., Neubauer, G., and Superti-Furga, G. (2002) Nature 415, 141-147
29. Leggett, D. S., Hanna, J., Borodovsky, A., Crosas, B., Schmidt, M., Baker, R. T., Walz, T., Ploegh, H., and Finley, D. (2002) Mol. Cell 10, 495-507
30. Gorbea, C., Goellner, G. M., Teter, K., Holmes, R. K., and Rechsteiner, M. (2004) J. Biol. Chem. 279, 54849-54861
31. Kleijnen, M. F., Roelofs, J., Park, S., Hathaway, N. A., Glickman, M., King, R. W., and Finley, D. (2007) Nat. Struct. Mol. Biol. 14, 1180-1188
32. Gorbea, C., Kaufmann, A. G., Pratt, G., Rechsteiner, M., and Rogers, S. W. (2006) Is. J. Chem. 46, 207-217
33. Kajava, A. V., Gorbea, C., Ortega, J., Rechsteiner, M., and Steven, A. C. (2004) J. Struct. Biol. 146, 425-430
34. Andrade, M. A., Petosa, C., O'Donoghue, S. I., Müller, C. W., and Bork, P. (2001) J. Mol. Biol. 309, 1-18
35. LaCount, D. J., Vignali, M., Chettier, R., Phansalkar, A., Bell, R., Hesselberth, J. R., Schoenfeld, L. W., Ota, I., Sahasrabudhe, S., Kurschner, C., Fields, S., and Hughes, R. E. (2005) Nature 438, 103-107
36. Kaltenbach, L. S., Romero, E., Becklin, R. R., Chettier, R., Bell, R., Phansalkar, A., Strand, A., Torcassi, C., Savage, J., Hurlburt, A., Cha, G. H., Ukani, L., Chepanoske, C. L., Zhen, Y., Sahasrabudhe, S., Olson, J., Kurschner, C., Ellerby, L. M., Peltier, J. M., Botas, J., and Hughes, R. E. (2007) PLoS. Genet. 3, e82
37. Bell, R., Hubbard, A., Chettier, R., Chen, D., Miller, J. P., Kapahi, P., Tarnopolsky, M., Sahasrabuhde, S., Melov, S., and Hughes, R. E. (2009) PLoS. Genet. 5, e1000414
38. Hoffman, L., Pratt, G., and Rechsteiner, M. (1992) J. Biol. Chem. 267, 22362-22368
39. Vallee, R. B. (1982) J. Cell Biol. 92, 435-442
40. Ewing, R. M., Chu, P., Elisma, F., Li, H., Taylor, P., Climie, S., McBroom-Cerajewski, L., Robinson, M. D., O'Connor, L., Li, M., Taylor, R., Dharsee, M., Ho, Y., Heilbut, A., Moore, L., Zhang, S., Ornatsky, O., Bukhman, Y. V., Ethier, M., Sheng, Y., Vasilescu, J., Abu-Farha, M., Lambert, J. P., Duewel, H. S., Stewart, II, Kuehl, B., Hogue, K., Colwill, K., Gladwish, K., Muskat, B., Kinach, R., Adams, S. L., Moran, M. F., Morin, G. B., Topaloglou, T., and Figeys, D. (2007) Mol. Syst. Biol. 3, 89
41. Woolner, S., and Bement, W. M. (2009) Trends Cell Biol. 19, 245-252
42. Nagy, S., Ricca, B. L., Norstrom, M. F., Courson, D. S., Brawley, C. M., Smithback, P. A., and Rock, R. S. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 9616-9620
43. Schroeder, H. W., III, Mitchell, C., Shuman, H., Holzbaur, E. L. F., and Goldman, Y. E. (2010) Curr. Biol. 20, 687-696
44. Miaczynska, M., and Stenmark, H. (2008) J. Cell Biol. 180, 7-11
45. Mayor, S., and Pagano, R. E. (2007) Nat. Rev. Mol. Cell. Biol. 8, 603-612
46. Sandvig, K., Torgersen, M. L., Raa, H. A., and van Deurs, B. (2008) Histochem. Cell Biol. 129, 267-276
47. Tanaka, K. (2009) Proc. Jpn. Acad. Ser. B Phys. Biol. Sci. 85, 12-36
48. Rechsteiner, M., and Hill, C. P. (2005) Trends Cell Biol. 15, 27-33
49. Verma, R., Chen, S., Feldman, R., Schieltz, D., Yates, J., Dohmen, J., and Deshaies, R. J. (2000) Mol. Biol. Cell 11, 3425-3439
50. Hamazaki, J., Iemura, S., Natsume, T., Yashiroda, H., Tanaka, K., and Murata, S. (2006) EMBO J. 25, 4524-4536
51. Guerrero, C., Milenkovic, T., Przulj, N., Kaiser, P., and Huang, L. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 13333-13338
52. Besche, H. C., Haas, W., Gygi, S. P., and Goldberg, A. L. (2009) Biochemistry 48, 2538-2549
53. Bousquet-Dubouch, M. P., Baudelet, E., Guérin, F., Matondo, M., Uttenweiler-Joseph, S., Burlet-Schiltz, O., and Monsarrat, B. (2009) Mol. Cell Proteomics 8, 1150-1164
54. Su, V., and Lau, A. F. (2009) Cell Mol. Life Sci. 66, 2819-2833
55. Kaake, R. M., Milenković, T., Przulj, N., Kaiser, P., and Huang, L. (2010) J. Proteome Res. 9, 2016-2029
56. Funakoshi, M., Tomko, R. J., Jr., Kobayashi, H., and Hochstrasser, M. (2009) Cell 137, 887-899
57. Park, S., Roelofs, J., Kim, W., Robert, J., Schmidt, M., Gygi, S. P., and Finley, D. (2009) Nature 459, 866-870
58. Bedford, L., Paine, S., Sheppard, P. W., Mayer, R. J., and Roelofs, J. (2010) Trends Cell Biol. 20, 391-401
59. Saeki, Y., Toh-E, A., Kudo, T., Kawamura, H., and Tanaka, K. (2009) Cell 137, 900-913
60. Thompson, D., Hakala, K., and DeMartino, G. N. (2009) J. Biol. Chem. 284, 24891-24903
61. Reits, E. A., Benham, A. M., Plougastel, B., Neefjes, J., and Trowsdale, J. (1997) EMBO J. 16, 6087-6094
62. Bhattacharyya, N. P., Banerjee, M., and Majumder, P. (2008) FEBS J. 275, 4271-4279
63. Caviston, J. P., and Holzbaur, E. L. (2009) Trends Cell Biol. 19, 147-155
64. Matsuura, Y., and Stewart, M. (2004) Nature 432, 872-877
65. Monecke, T., Güttler, T., Neumann, P., Dickmanns, A., Görlich, D., and Ficner, R. (2009) Science 324, 1087-1091
66. Yamamoto, Y., Singh, C. R., Marintchev, A., Hall, N. S., Hannig, E. M., Wagner, G., and Asano, K. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 16164-16169
67. Clague, M. J. (2002) Curr. Biol. 12, R529-531
68. Sachse, M., Urbé, S., Oorschot, V., Strous, G. J., and Klumperman, J. (2002) Mol. Biol. Cell 13, 1313-1328
69. Williams, R. L., and Urbé, S. (2007) Nat. Rev. Mol. Cell Biol. 8, 355-368
70. Yu, A., and Malek, T. R. (2001) J. Biol. Chem. 276, 381-385
71. Malik, B., Schlanger, L., Al-Khalili, O., Bao, H. F., Yue, G., Price, S. R., Mitch, W. E., and Eaton, D. C. (2001) J. Biol. Chem. 276, 12903-12910
72. Deng, L., He, K., Wang, X., Yang, N., Thangavel, C., Jiang, J., Fuchs, S. Y., and Frank, S. J. (2007) Mol. Endocrinol. 21, 1537-1551
73. Melman, L., Geuze, H. J., Li, Y., McCormick, L. M., Van Kerkhof, P., Strous, G. J., Schwartz, A. L., and Bu, G. (2002) Mol. Biol. Cell 13, 3325-3335
74. Alwan, H. A., van Zoelen, E. J., and van Leeuwen, J. E. (2003) J. Biol. Chem. 278, 35781-35790
75. Hammond, D. E., Urbé, S., Vande Woude, G. F., and Clague, M. J. (2001) Oncogene. 20, 2761-2770
76. Longva, K. E., Blystad, F. D., Stang, E., Larsen, A. M., Johannessen, L. E., and Madshus, I. H. (2002) J. Cell Biol. 156, 843-854
77. Patrick, G. N., Bingol, B., Weld, H. A., and Schuman, E. M. (2003) Curr. Biol. 13, 2073-2081
78. van Kerkhof, P., Alves dos Santos, C. M., Sachse, M., Klumperman, J., Bu, G., and Strous, G. J. (2001) Mol. Biol. Cell 12, 2556-2566
79. Babst, M., Katzmann, D. J., Snyder, W. B., Wendland, B., and Emr, S. D. (2002) Dev. Cell 3, 283-289
80. Bonifacino, J. S., and Rojas, R. (2006) Nat. Rev. Mol. Cell Biol. 7, 568-579
81. Lauvrak, S. U., Torgersen, M. L., and Sandvig, K. (2004) J. Cell Sci. 117, 2321-2331
82. Meyer, C., Zizioli, D., Lausmann, S., Eskelinen, E. L., Hamann, J., Saftig, P., von Figura, K., and Schu, P. (2000) EMBO J. 19, 2193-2203
83. Medigeshi, G. R., and Schu, P. (2003) Traffic 4, 802-811
84. Saint-Pol, A., Yélamos, B., Amessou, M., Mills, I. G., Dugast, M., Tenza, D., Schu, P., Antony, C., McMahon, H. T., Lamaze, C., and Johannes, L. (2004) Dev. Cell 6, 525-538
85. Popoff, V., Mardones, G. A., Tenza, D., Rojas, R., Lamaze, C., Bonifacino, J. S., Raposo, G., and Johannes, L. (2007) J. Cell Sci. 120, 2022-2031
86. Babuke, T., and Tikkanen, R. (2007) Eur. J. Cell Biol. 86, 525-532
87. Langhorst, M. F., Reuter, A., and Stuermer, C. A. (2005) Cell Mol. Life Sci. 62, 2228-2240
88. Browman, D. T., Hoegg, M. B., and Robbins, S. M. (2007) Trends Cell Biol. 17, 394-402
89. Morrow, I. C., and Parton, R. G. (2005) Traffic 6, 725-740
90. Rajalingam, K., Wunder, C., Brinkmann, V., Churin, Y., Hekman, M., Sievers, C., Rapp, U. R., and Rudel, T. (2005) Nat. Cell Biol. 7, 837-843
91. Limpert, A. S., Karlo, J. C., and Landreth, G. E. (2007) Mol. Cell. Biol. 27, 5686-5698
92. Liu, J., Deyoung, S. M., Zhang, M., Dold, L. H., and Saltiel, A. R. (2005) J. Biol. Chem. 280, 16125-16134
93. Stuermer, C. A., Langhorst, M. F., Wiechers, M. F., Legler, D. F., Von Hanwehr, S. H., Guse, A. H., and Plattner, H. (2004) FASEB J. 18, 1731-1733
94. Kaabeche, K., Lemonnier, J., Le Mée, S., Caverzasio, J., and Marie, P. J. (2004) J. Biol. Chem. 279, 36259-36267
95. Ghosh, A. K., Reddi, A. L., Rao, N. L., Duan, L., Band, V., and Band, H. (2004) J. Biol. Chem. 279, 36132-36141
96. Pederson, T. M., Kramer, D. L., and Rondinone, C. M. (2001) Diabetes 50, 24-31
97. He, F., and Stephens, J. M. (2006) Biochem. Biophys. Res. Commun. 344, 95-98
98. Lee, A. V., Gooch, J. L., Oesterreich, S., Guler, R. L., and Yee, D. (2000) Mol. Cell. Biol. 20, 1489-1496
99. Langhorst, M. F., Reuter, A., Jaeger, F. A., Wippich, F. M., Luxenhofer, G., Plattner, H., and Stuermer, C. A. (2008) Eur. J. Cell Biol. 87, 211-226
100. Neumann-Giesen, C., Fernow, I., Amaddii, M., and Tikkanen, R. (2007) J. Cell Sci. 120, 395-406
101. Clague, M. J., and Urbé, S. (2006) Trends Cell Biol. 16, 551-559
102. Mills, I. G. (2007) Semin. Cell Dev. Biol. 18, 459-470
103. Porat-Shliom, N., Kloog, Y., and Donaldson, J. G. (2008) Mol. Biol. Cell 19, 765-775