Large scale identification of genes involved in cell surface biosynthesis and architecture in Saccharomyces cerevisiae

Genetics

Volumn 147, Issue 2, 1997, Pages 435-450

  Lussier, Marc ^a   White, Ann Marie ^b   Sheraton, Jane ^a   Di Paolo, Tiziano ^a   Treadwell, Julie ^a   Southard, Susan B ^b   Horenstein, Craig I ^b   Chen Weiner, Joan ^b   Ram, Arthur F J ^c   Kapteyn, Johan C ^c   Roemer, Terry W ^d   Vo, Dahn H ^a   Bondoc, Dana C ^a   Hall, John ^a   Zhong, Wu Wei ^a   Sdicu, Anne Marie ^a   Davies, Julian ^e   Klis, Frans M ^c   Robbins, Phillips W ^b   Bussey, Howard ^a  

^a MCGILL UNIVERSITY   (Canada)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^c Institute for Molecular Cell Biology   (Netherlands)

^d YALE UNIVERSITY   (United States)

^e UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL SURFACE; CELL WALL; GENE ISOLATION; GENE MUTATION; MEMBRANE FORMATION; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

CELL MEMBRANE; DNA TRANSPOSABLE ELEMENTS; GENES, FUNGAL; MICROBIAL SENSITIVITY TESTS; MUTAGENESIS, SITE-DIRECTED; PHENOTYPE; SACCHAROMYCES CEREVISIAE;

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 15444360108     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (81)

1. ALTSCHUL, S. F., W. MILLER, E. W. MYERS and D. J. LIPMAN, 1990 Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. BAGULEY, B.C., G. ROMMELE, J. GRUNER and W. WEHRLI, 1979 Papulacandin B: an inhibitor of glucan synthesis in yeast spheroplasts. Enr. J. Biochem. 197: 345-351.
3. BALLOU, L., R. A. HITZEMAN, M. S. LEWIS and C. E. BALLOU, 1991 Vanadate-resistant yeast mutants are defective in protein glycosylation. Proc. Natl. Acad. Sci. USA 88: 3209-3212.
4. BAUDIN, A., O. OZIER-KALOGEROPOULOS, A. DENOUEL, F. LACROUTE and C. CULLIN, 1993 A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. Nucleic Acids Res. 21: 3329.
5. BOONE, C., S. S. SOMMER, A. HENSEL and H. BUSSEY 1990 Yeast KRE genes provide evidence for a pathway of cell wall β-glucan assembly. J. Cell. Biol. 110: 1833-1843.
6. BROWN, J. L., H. BUSSEY and R. C. STEWART, 1994a Yeast Skn7p functions in a eukaryotic two-component regulatory pathway. EMBO J. 13: 5186-5194.
7. BROWN, J. L., T. ROEMER, M. LUSSIER, A-M. SDICU and H. BUSSEY, 1994b The K1 killer toxin: molecular and genetic applications to secretion and cell surface assembly, pp: 217-231 in Molecular Genetics of Yeast: A Practical Approach, edited by J. R. JOHNSTON. IRL Press, Oxford University Press, Oxford.
8. BULAWA, C. E., 1993 Genetics and molecular biology of chitin synthesis in fungi. Annu. Rev. Microbiol. 47: 505-534.
9. BURDA, P., S. TE HEESEN, A. BRACHAT, A. WACH, A. DÜSTERHOFT et al., 1996 Stepwise assembly of the lipid-linked oligosaccharide in the endoplasmic reticulum of Saccharomyces cerevisiae: identification of the ALG9 gene encoding a putative mannosyltransferase. Proc. Natl. Acad. Sci. USA 93: 7160-7165.
10. BURNS, N., B. GRIMWADE, P. B. Ross-MACDONALD, E. Y. CHOI, K. FINBKRG et al., 1994 Large-scale analysis of gene expression, protein localization, and gene disruption in Saccharomyces cerevisiae. Genes Dev. 8: 1087-1105.
11. BUSSEY, H., 1991 K1 killer toxin, a pore-forming protein from yeast. Mol. Microbiol. 5: 2339-2343.
12. CHANT, J., and J. R. PRINGLE, 1995 Patterns of bud-site selection in the yeast Saccharomyces cerevisiae. J. Cell Biol. 129: 751-765.
13. CHUN, K. T., and M. G. GOEBL, 1996 The identification of transposon-tagged mutations in essential genes that affect cell morphology in Saccharomyces cerevisiae. Genetics 142: 39-50.
14. CID, V. J., A. DURAN, F. DEL REY, M. P. SNYDER, C. NOMBELA et al., 1995 Molecular basis of cell integrity and morphogenesis in Saccharomyces cerevisiae. Microbiol. Rev. 59: 345-386.
15. CONIBEAR, E., and T. H. STEVENS, 1995 Vacuolar biogenesis in yeast: sorting out the sorting proteins. Cell 83: 513-516.
16. COSTIGAN, C., S. GEHRUNG and M. SNYDER, 1992 A synthetic lethal screen identifies SLK1, a novel protein kinase homolog implicated in yeast cell morphogenesis and cell growth. Mol. Cell. Biol. 12: 1162-1178.
17. DANG, V.-D., M. VALENS, M. BOLOTIN-FUKUHARA and B. DAIGNANFORNIER, 1994 A genetic screen to isolate genes regulated by the yeast CCAAT-box binding protein Hap2p. Yeast 10: 1273-1283.
18. DEAN, N., 1995 Yeast glycosylation mutants are sensitive to aminoglycosides. Proc. Natl. Acad. Sci. USA 92: 1287-1291.
19. DE NOBEL, J. G., F. M. KLIS, J. PRIEM, T. MUNNIK and H. VAN DEN ENDE, 1990 The glucanase-soluble mannoproteins limit cell wall porosity in Saccharomyces cerevisiae. Yeast 6: 491-499.
20. DONNINI, C., T. LODI, I. FERRERO and P. P. PUGLISI, 1992 IMP2, a nuclear gene controlling the mitochondrial dependence of galactose, maltose and raffinose utilization in Saccharomyces cerevisiae. Yeast 8: 83-93.
21. DUJON, B., 1996 The yeast genome project - what did we learn? Trends Genet. 12: 263-270.
22. ELORZA, M. V., H. RICO and R. SENTANDREU, 1983 Calcofluor white alters the assembly of chitin fibrils in Saccharomyces cerevisiae and Candida albicans cells. J. Gen. Microbiol. 129: 1577-1582.
23. ENNIS, D. G., J. W. LITTLE and D.W. MOUNT, 1993 Novel mechanism for UV sensitivity and apparent UV nonmutability of recA432 mutants: persistent LexA cleavage following SOS induction. J. Bacteriol. 175: 7373-7382.
24. ERREDE, B., and D. E. LEVIN, 1993 A conserved kinase cascade for MAP kinase activation in yeast. Curr. Opin. Cell Biol. 5: 254-260.
25. ESTRUCH, F., and M. CARILSON, 1990 Increased dosage of the MSN1 gene restores invertase expression in yeast mutants defective in the SNF1 protein kinase. Nucleic Acids Res. 18: 6959-6964.
26. EVANS, I. H., E. S. DIALA, A. EARL and D. WILKIE, 1980 Mitochondrial control of cell surface characteristics in Saccharomyces cerevisiar. Biochim. Biophys. Acta 602: 201-206.
27. FLEET, G. H., 1991 Cell walls, pp. 199-277 in The Yeasts, Vol 4. edited by A. H. ROSE and J. S. HARRISON. Academic Press, New York.
28. FLESCHER, E. G., K. MADDEN and M. SNYDER, 1993 Components required for cytokinesis are important for bud site selection in yeast. J. Cell Biol. 122: 373-386.
29. FONT DE MORA, J., E. HERRERO and R. SENTANDREU, 1993 A kinetic study on the regeneration of Candida albicans protoplasts in the presence of cell wall inhibitors. FEMS Microbiol. Let. 111: 43-47.
30. + ATPase. Mol. Cell. Biol. 15: 4103-4114.
31. GENTZSCH, M., and W. TANNER, 1996 The PMT gene family: protein O-glycosylation in Saccharomyces cerevisiae is vital. EMBO J. 15: 5752-5759.
32. GIETZ, R. D., R. H. SCHIESTL, A. R. WILLEMS and R. A. WOODS, 1995 Studies on the transformation of intact yeast cells by the LiAc/ SS-DNA/PEG procedure. Yeast 11: 355-360.
33. GOFFEAU, A., B. G. BARREEL, H. BUSSEY, R. W. DAVIS, B. DUJON et al., 1996 Life with 6000 genes. Science 274: 546-567.
34. GUSTINCICH, S., G. MANFIOLETTI, G. D. SAL, C. SCHNEIDER and P. CARNINCI, 1991 A fast method for high-quality genomic DNA extraction from whole human blood. BioTechniques 11: 298-302.
35. HÄUSLER, A., and P. W. ROBBINS, 1992 Glycosylation in Saccharomyces cerevisiae: cloning and characterization of an α-1,2-mannosyltransferase structural gene. Glycobiology 2: 77-84.
36. HÄUSLER, A., L. BALLOU, C. E. BALLOU and P. W. ROBBINS, 1992 Yeast glycoprotein biosynthesis: MNT1 encodes an α-1,2-mannosyltransferase involved in O-glycosylation. Proc. Natl. Acad. Sci. USA 89: 6846-6850.
37. HERSCOVICS, A., and P. ORLEAN, 1993 Glycoprotein biosynthesis in yeast. FASEB J. 7: 540-550.
38. HILL, K., C. BOONE, M. GOEBL, R. PUCCIA, A.-M. SDICU et al., 1992 Yeast KRE2 defines a new gene family encoding probable secretory proteins, and is required for the correct N-glycosylation of proteins. Genetics 130: 273-283.
39. IGUAL, J. C., A. L. JOHNSON and L. H. JOHNSTON, 1996 Coordinated regulation of gene expression by the cell cycle transcription factor SWI4 and the protein kinase C map kinase pathway for yeast cell integrity. EMBO J. 15: 5001-5013.
40. IRIE, K., M. TAKASE, H. ARAKI and Y. OSHIMA, 1993 A gene, SMP2, involved in plasmid maintenance and respiration in Saccharomyces cerevisiaeencodes a highly charged protein. Mol. Gen. Genet 236: 283-288.
41. JIANG, B., A. J. F. RAM, J. SHERATON, F. M. KLIS and H. BUSSEY, 1995 Regulation of cell wall β-glucan assembly: PTC1 negatively affects PBS2 action in a pathway that includes modulation of EXG1 transcription. Mol. Gen. Genetics 248: 260-269.
42. JOHZUKA, K., and H. OGAWA, 1995 Interaction of Mre 11 and Rad50: two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Genetics 139: 1521-1532.
43. KLIS, F. M., 1994 Cell wall assembly in yeast. Yeast 10: 851-869.
44. KOPECKA, M., 1984 Papulacandin B: inhibitor of biogenesis of (1-3)-β-D-glucan fibrillar component of the cell wall of Saccharomyces cerevisiae protoplasts. Folia Mirobiol. 29: 441-449.
45. KRON, S. J., C. A. STYLES and G. R. FINK, 1994 Symmetric cell division in pseudohyphae of the yeast Saccharomyces cerevisiae. Mol. Biol. Cell 5: 1003-1022.
46. LEHLE, L., and W. TANNER, 1995 Protein glycosylation in yeast, pp. 1-35 in Glycoproteins, edited by J. Montreuil, H. Schachter and J. F. G. VLIEGENTHART. Elsevier Science, Amsterdam.
47. LUSSIER, M., A.-M. SDICU, T. KETELA and H. BUSSEY, 1995a Localization and targeting of the Saccharomyces cerevisiae Kre2p/Mnt1p α1,2-Mannosyltransferase to a medial-Golgi compartment. J. Cell Biol. 131: 913-927.
48. LUSSIER, M., M. GENTZSCH, A.-M. SDICU, H. BUSSEY and W. TANNER, 1995b Protein O-glycosylation in yeast, the PMT2 gene specifics a second protein O-mannosyltransferase that functions in addition to the PMT1-encoded activity. J. Biol. Chem. 270: 2770-2775.
49. LUSSIER, M., A.-M. SDICU, A. CAMIRAND and H. BUSSEY, 1996 Functional characterization of the YUR1, KTR1 and KTR2 genes as member of the KRE2/MNT1 mannosyltransferase gene family. J. Biol. Chem. 271: 11001-11008.
50. LUSSIER, M., A.-M. SDICU, E. WINNETT, D. H. Vo, J. SHERATON et al., 1997 Completion of the Saccharomyces cerevisiae genome sequence allows identification of KTR5, ATR6 and KTR7 and definition of the nine-membered KRE2/MNT1 mannosyltransferase gene family in this organism. Yeast 13: 267-274.
51. MADDEN, K., C. COSTIGAN and M. SNYDER, 1992 Cell polarity and morphogenesis in Saccharomyces cerevisiae. Trends Cell Biol. 2: 21-29.
52. MARSHALL-CARLSON, L., L NKIGEBORN, D. COONS, L. BISSON and M. CARLSON, 1991 Dominant and recessive suppressors that restore glucose transport in a yeast snf3 mutant. Genetics 128: 505-512.
53. MATSUURA, A., and Y. ANRAKU, 1993 Characterization of the MKS1 gene, a new negative regulator of the Ras-cyclic AMP pathway in Saccharomyces cerevisiae. Mol. Gen. Genet. 238: 6-16.
54. MEADEN, P., K HILL, J. WAGNER, D. SLIPETZ, S. S. SOMMER et al., 1990 The yeast KRE5 gene encodes a probable endoplasmic reticulum protein required for (1-6)-β-D-glucan synthesis and normal cell growth. Mol. Cell. Biol. 10: 3013-3019.
55. MÖSCH, H. U., and G. R. FINK, 1997 Dissection of filamentous growth by transposon mutagenesis in Saccharomyces cerevisiae. Genetics 145: 671-684.
56. MULHOLLAND, J., D. PREUSS, A. MOON, A. WONG, D. DRUBIN et al., 1994 Ultrastructure of the yeast actin cytoskeleton and its association with the plasma membrane. J. Cell. Biol. 125: 381-391.
57. MURGUI, A., M. V. ELORZA and R. SENTANDREU, 1985 Effect of papulacandin B and calcofluor white on the incorporation of mannoproteins in the wall of Candida albicans blastospores. Biochim. Biophys. Acta 841: 215-222.
58. NIEDENTHAL., R. K., L. RILES, M. JOHNSTON and J. H. HEGEMANN, 1996 Green fluorescent protein as a marker for gene expression and subcellular localization in budding yeast. Yeast 12: 773-786.
59. OLIVER, S., 1994 Back to bases in biology. Nature 368: 14-15.
60. OLIVER, S., 1996 From DNA sequence to biological function. Nature 379: 597-600.
61. PARAVCINI, G., M. COOPER, L. FRIEDLI, D. J. SMITH, J. L. CARPENTIER et al., 1992 The osmotic integrity of the yeast cell requires a functional PKC1 gene product. Mol. Cell. Biol. 12: 4896-4905.
62. 1. Mol. Pharmacol. 43: 37-41.
63. POSAS, F., A. CASAMAYOR and J. ARINO, 1993 The PPZ protein phosphatases are involved in the maintenance of osmotic stability of yeast cells. FEBS Lett. 318: 282-286.
64. PRYER, N. K., L. J. WUESTEHUBE and R. SCHEKMAN, 1992 Vesicle-mediated protein sorting. Annu. Rev. Biochem. 61: 471-516.
65. RAM, A. F. J., A. WOLTERS, R. TEN HOOPEN and F. M. KLIS, 1994 A new approach for isolating cell wall mutants in Saccharomyces cerevisiae by screening for hypersensitivity to calcofluor white. Yeast 10: 1019-1030.
66. RAM, A. F. J., S. S. BREKELMANS, L. J. OEHLEN and F. M. KLIS, 1995 Identification of two cell cycle regulated genes affecting the β1,3-glucan content of cell walls in Saccharomyces cerevisiae. FEBS Lett. 358: 165-170.
67. ROEMER, T., S. DELANEY and H. BUSSEY, 1993 SKN1 and KRE6 define a pair of functional homologs encoding putative membrane proteins involved in β-glucan synthesis. Mol. Cell. Biol. 13: 4039-4048.
68. ROEMER, T., G. PARAVICINI, M. A. PAYTON and H. BUSSEY, 1994 Characterization of the yeast 1,6-beta-glucan biosynthetic components, Kre6p and Skn1p, and genetic interactions between the PKC1 pathway and extracellular matrix assembly. J. Cell Biol. 127: 567-579.
69. RUZAL, S. M., A. F. ALICE and C. SANCHKZ-RIVAS, 1994 Osmoresistance of spores from Bacillus subtilis and the effect of ssp mutations. Microbiology 140: 2173-2177.
70. SANGER, F., S. NICKLEN and A. R. COULSON, 1977 DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
71. SCHULLER, C., J. L. BREWSTER, M. R. ALEXANDER, M. C. GUSTIN and H. RUIS, 1994 The HOG pathway controls osmotic regulation of transcription via the stress response element (STRE) of the Saccharomyces cerevisiae. CTT1 gene. EMBO J. 13: 4382-4389.
72. SIMON, J. R., 1993 Transformation of intact yeast cells by electroporation. Methods Enzymol. 217: 478-483.
73. SONI, R., J. P. CARMICHAEL. and J. A. MURRAY, 1993 Parameters affecting lithium acetate-mediated transformation of Saccharomyces cerevisiae and development of a rapid and simplified procedure. Curr. Genet. 24: 455-459.
74. TZAGOLOFF, A., M. NOBREGA, N. GORMAN and P. SINCLAIR, 1993 On the functions of the yeast COX10 and COX11 gene products. Biochem. Mol. Biol. Int. 31: 593-598.
75. VAMBUTAS, A., S. H. ACKERMAN and A. TZAGOLOFF, 1991 Mitochondrial translational-initiation and elongation factors in Saccharomyces cerevisiae. Eur. J. Biochem. 201: 643-652.
76. VAN DER VAART, J. M., L. H. P. CARO, J. W. CHAPMAN, F. M. KLIS and C. T. VERRIPS, 1995 Identification of three mannoproteins in the cell wall of Saccharomyces cerevisiae. J. Bacteriol. 177: 3104-3110.
77. VERNET, T., DIGNARD, D. and THOMAS, D. Y. 1987 A family of yeast expression vectors containing the phage fl intergenic region. Gene 52: 225-233.
78. VOORN-BROUWER, T., I. VAN DFR LEIJ, W. HEMRIKA, B. DISTEL and H. F. TABAK, 1993 Sequence of the PAS8 gene, the product of which is essential for biogenesis of peroxisomes in Saccharomyces cerevisiae. Biochim. Biophys. Acta 1216: 325-328.
79. WACH, A., A BRACHAT, R. POHLMANN and P. PHILLIPSEN, 1994 New heterologous modules for classical or PCR-based gene disruptions in Saccharamyces cerevisiae. Yeast 10: 1793-1808.
80. WILKIE, D., I. H. EVANS, V. EGILSSON, E. S. DIALA and D. COLLIER, 1983 Mitochondria, cell surface, and carcinogenesis. Int. Rev. Cytol. 15: 157-189.
81. ZAHNER, J. E., H. A. HARKINS and J. R. PRINGLE, 1996 Genetic analysis of the bipolar pattern of bud site selection in the yeast Saccharomyces cerevisiae. Mol. Cell. Biol. 16: 1857-1870.