-
1
-
-
0035946941
-
Comparison of ARM and HEAT protein repeats
-
Andrade M.A., Petosa C., O'Donoghue S.I., Muller C.W., Bork P. Comparison of ARM and HEAT protein repeats. J. Mol. Biol. 309:2001;1-18.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 1-18
-
-
Andrade, M.A.1
Petosa, C.2
O'Donoghue, S.I.3
Muller, C.W.4
Bork, P.5
-
2
-
-
0011542799
-
The Pfam protein families database
-
Bateman A., Birney E., Cerruti L., Durbin R., Etwiller L., Eddy S.R., Griffiths-Jones S., Howe K.L., Marshall M., Sonnhammer E.L. The Pfam protein families database. Nucleic Acids Res. 30:2002;276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
3
-
-
0032488846
-
The proteasome: Paradigm of a self-compartmentalizing protease
-
Baumeister W., Walz J., Zuhl F., Seemuller E. The proteasome: paradigm of a self-compartmentalizing protease. Cell. 92:1998;367-380.
-
(1998)
Cell
, vol.92
, pp. 367-380
-
-
Baumeister, W.1
Walz, J.2
Zuhl, F.3
Seemuller, E.4
-
4
-
-
0030093114
-
A flexible motif search technique based on generalized profiles
-
Bucher P., Karplus K., Moeri N., Hofmann K. A flexible motif search technique based on generalized profiles. Comput. Chem. 20:1996;3-23.
-
(1996)
Comput. Chem.
, vol.20
, pp. 3-23
-
-
Bucher, P.1
Karplus, K.2
Moeri, N.3
Hofmann, K.4
-
5
-
-
0001506297
-
Structure of the nuclear transport complex karyopherin-beta2-Ran x GppNHp
-
Chook Y.M., Blobel G. Structure of the nuclear transport complex karyopherin-beta2-Ran x GppNHp. Nature. 399:1999;230-237.
-
(1999)
Nature
, vol.399
, pp. 230-237
-
-
Chook, Y.M.1
Blobel, G.2
-
6
-
-
0033587167
-
Structure of importin-beta bound to the IBB domain of importin-alpha
-
Cingolani G., Petosa C., Weis K., Muller C.W. Structure of importin-beta bound to the IBB domain of importin-alpha. Nature. 399:1999;221-229.
-
(1999)
Nature
, vol.399
, pp. 221-229
-
-
Cingolani, G.1
Petosa, C.2
Weis, K.3
Muller, C.W.4
-
7
-
-
46149129351
-
Interactive program for visualization and modelling of proteins, nucleic acids and small molecules
-
Dayring H.E., Tramonato A., Sprang S.R., Fletterick R.J. Interactive program for visualization and modelling of proteins, nucleic acids and small molecules. J. Mol. Graphics. 4:1986;82-87.
-
(1986)
J. Mol. Graphics
, vol.4
, pp. 82-87
-
-
Dayring, H.E.1
Tramonato, A.2
Sprang, S.R.3
Fletterick, R.J.4
-
8
-
-
0026498493
-
Purification of an 11 S regulator of the multicatalytic protease
-
Dubiel W., Pratt G., Ferrell K., Rechsteiner M. Purification of an 11 S regulator of the multicatalytic protease. J. Biol. Chem. 267:1992;22369-22377.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 22369-22377
-
-
Dubiel, W.1
Pratt, G.2
Ferrell, K.3
Rechsteiner, M.4
-
9
-
-
0242522904
-
Blm 3 is part of nascent proteasomes and is involved in a late stage, of nuclear proteasome assembly
-
Fehlter M., Wendler P., Lehmann A., Enenkel C. Blm 3 is part of nascent proteasomes and is involved in a late stage, of nuclear proteasome assembly. EMBO Rep. 4:2003;959-963.
-
(2003)
EMBO Rep.
, vol.4
, pp. 959-963
-
-
Fehlter, M.1
Wendler, P.2
Lehmann, A.3
Enenkel, C.4
-
10
-
-
0032606140
-
CAFASP-1: Critical assessment of fully automated structure prediction methods
-
Fischer D., Barret C., Bryson K., Elofsson A., Godzik A., Jones D., Karplus K.J., Kelley L.A., MacCallum R.M., Pawowski K., Rost B., Rychlewski L., Sternberg M. CAFASP-1: critical assessment of fully automated structure prediction methods. Proteins. (Suppl. 3):1999;209-217.
-
(1999)
Proteins
, Issue.SUPPL. 3
, pp. 209-217
-
-
Fischer, D.1
Barret, C.2
Bryson, K.3
Elofsson, A.4
Godzik, A.5
Jones, D.6
Karplus, K.J.7
Kelley, L.A.8
MacCallum, R.M.9
Pawowski, K.10
Rost, B.11
Rychlewski, L.12
Sternberg, M.13
-
11
-
-
0032483546
-
A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3
-
Glickman M.H., Rubin D.M., Coux O., Wefes I., Pfeifer G., Cjeka Z., Baumeister W., Fried V.A., Finley D. A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. Cell. 94:1998;615-623.
-
(1998)
Cell
, vol.94
, pp. 615-623
-
-
Glickman, M.H.1
Rubin, D.M.2
Coux, O.3
Wefes, I.4
Pfeifer, G.5
Cjeka, Z.6
Baumeister, W.7
Fried, V.A.8
Finley, D.9
-
12
-
-
0033766480
-
A gated channel into the proteasome core particle
-
Groll M., Bajorek M., Kohler A., Moroder L., Rubin D.M., Huber R., Glickman M.H., Finley D. A gated channel into the proteasome core particle. Nat. Struct. Biol. 7:2000;1062-1067.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1062-1067
-
-
Groll, M.1
Bajorek, M.2
Kohler, A.3
Moroder, L.4
Rubin, D.M.5
Huber, R.6
Glickman, M.H.7
Finley, D.8
-
13
-
-
0030897031
-
Structure of 20S proteasome from yeast at 2.4 a resolution
-
Groll M., Ditzel L., Lowe J., Stock D., Bochtler M., Bartunik H.D., Huber R. Structure of 20S proteasome from yeast at 2.4 A resolution. Nature. 386:1997;463-471.
-
(1997)
Nature
, vol.386
, pp. 463-471
-
-
Groll, M.1
Ditzel, L.2
Lowe, J.3
Stock, D.4
Bochtler, M.5
Bartunik, H.D.6
Huber, R.7
-
14
-
-
0033534405
-
The structure of the protein phosphatase 2A PR65/A subunit reveals the conformation of its 15 tandemly repeated HEAT motifs
-
Groves M.R., Hanlon N., Turowski P., Hemmings B.A., Barford D. The structure of the protein phosphatase 2A PR65/A subunit reveals the conformation of its 15 tandemly repeated HEAT motifs. Cell. 96:1999;99-110.
-
(1999)
Cell
, vol.96
, pp. 99-110
-
-
Groves, M.R.1
Hanlon, N.2
Turowski, P.3
Hemmings, B.A.4
Barford, D.5
-
15
-
-
0025886124
-
Localization of subunits in proteasomes from Thermoplasma acidophilum by immunoelectron microscopy
-
Grziwa A., Baumeister W., Dahlmann B., Kopp F. Localization of subunits in proteasomes from Thermoplasma acidophilum by immunoelectron microscopy. FEBS Lett. 290:1991;186-190.
-
(1991)
FEBS Lett.
, vol.290
, pp. 186-190
-
-
Grziwa, A.1
Baumeister, W.2
Dahlmann, B.3
Kopp, F.4
-
16
-
-
0029360452
-
The FHA domain: A putative nuclear signalling domain found in protein kinases and transcription factors
-
Hofmann K., Bucher P. The FHA domain: a putative nuclear signalling domain found in protein kinases and transcription factors. Trends Biochem. Sci. 20:1995;347-349.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 347-349
-
-
Hofmann, K.1
Bucher, P.2
-
17
-
-
0030800831
-
Three-dimensional structure of the armadillo repeat region of beta-catenin
-
Huber A.H., Nelson W.J., Weis W.I. Three-dimensional structure of the armadillo repeat region of beta-catenin. Cell. 90:1997;871-882.
-
(1997)
Cell
, vol.90
, pp. 871-882
-
-
Huber, A.H.1
Nelson, W.J.2
Weis, W.I.3
-
18
-
-
0035783062
-
Review: Proteins with repeated sequence - Structural prediction and modeling
-
Kajava A.V. Review: proteins with repeated sequence - structural prediction and modeling. J. Struct. Biol. 134:2001;132-144.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 132-144
-
-
Kajava, A.V.1
-
19
-
-
0037147328
-
What curves alpha-solenoids? Evidence for an alpha-helical toroid structure of Rpn1 and Rpn2 proteins of the 26 S proteasome
-
Kajava A.V. What curves alpha-solenoids? Evidence for an alpha-helical toroid structure of Rpn1 and Rpn2 proteins of the 26 S proteasome. J. Biol. Chem. 277:2002;49791-49798.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 49791-49798
-
-
Kajava, A.V.1
-
20
-
-
0031301752
-
Predicting protein structure using hidden Markov models
-
Karplus K., Sjolander K., Barrett C., Cline M., Haussler D., Hughey R., Holm L., Sander C. Predicting protein structure using hidden Markov models. Proteins. (Suppl. 1):1997;134-139.
-
(1997)
Proteins
, Issue.SUPPL. 1
, pp. 134-139
-
-
Karplus, K.1
Sjolander, K.2
Barrett, C.3
Cline, M.4
Haussler, D.5
Hughey, R.6
Holm, L.7
Sander, C.8
-
21
-
-
0034306119
-
When protein folding is simplified to protein coiling: The continuum of solenoid protein structures
-
Kobe B., Kajava A.V. When protein folding is simplified to protein coiling: the continuum of solenoid protein structures. Trends Biochem. Sci. 25:2000;509-515.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 509-515
-
-
Kobe, B.1
Kajava, A.V.2
-
22
-
-
0036753063
-
Multiple associated proteins regulate proteasome structure and function
-
Leggett D.S., Hanna J., Borodovsky A., Crosas B., Schmidt M., Baker R.T., Walz T., Ploegh H., Finley D. Multiple associated proteins regulate proteasome structure and function. Mol. Cell. 10:2002;495-507.
-
(2002)
Mol. Cell
, vol.10
, pp. 495-507
-
-
Leggett, D.S.1
Hanna, J.2
Borodovsky, A.3
Crosas, B.4
Schmidt, M.5
Baker, R.T.6
Walz, T.7
Ploegh, H.8
Finley, D.9
-
23
-
-
0016162558
-
Algorithms for prediction of alpha-helical and beta-structural regions in globular proteins
-
Lim V.I. Algorithms for prediction of alpha-helical and beta-structural regions in globular proteins. J. Mol. Biol. 88:1974;873-894.
-
(1974)
J. Mol. Biol.
, vol.88
, pp. 873-894
-
-
Lim, V.I.1
-
24
-
-
0029042511
-
Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 a resolution
-
Lowe J., Stock D., Jap B., Zwickl P., Baumeister W., Huber R. Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution. Science. 268:1995;533-539.
-
(1995)
Science
, vol.268
, pp. 533-539
-
-
Lowe, J.1
Stock, D.2
Jap, B.3
Zwickl, P.4
Baumeister, W.5
Huber, R.6
-
25
-
-
0030926522
-
A repetitive sequence in subunits of the 26S proteasome and 20S cyclosome (anaphase-promoting complex)
-
Lupas A., Baumeister W., Hofmann K. A repetitive sequence in subunits of the 26S proteasome and 20S cyclosome (anaphase-promoting complex). Trends Biochem. Sci. 22:1997;195-196.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 195-196
-
-
Lupas, A.1
Baumeister, W.2
Hofmann, K.3
-
26
-
-
0026669739
-
Identification, purification, and characterization of a protein activator (PA28) of the 20 S proteasome (macropain)
-
Ma C.P., Slaughter C.A., DeMartino G.N. Identification, purification, and characterization of a protein activator (PA28) of the 20 S proteasome (macropain). J. Biol. Chem. 267:1992;10515-10523.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 10515-10523
-
-
Ma, C.P.1
Slaughter, C.A.2
Demartino, G.N.3
-
27
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin L.J., Bryson K., Jones D.T. The PSIPRED protein structure prediction server. Bioinformatics. 16:2000;404-405.
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
28
-
-
0001730460
-
The 26S proteasome
-
J.-M. Peters, J.R. Harris, & D. Finley. New York: Plenum
-
Rechsteiner M. The 26S proteasome. Peters J.-M., Harris J.R., Finley D. Ubiquitin and the Biology of the Cell. 1998;147-189 Plenum, New York.
-
(1998)
Ubiquitin and the Biology of the Cell
, pp. 147-189
-
-
Rechsteiner, M.1
-
29
-
-
0033965851
-
The proteasome activator 11 S REG (PA28) and class I antigen presentation
-
Rechsteiner M., Realini C., Ustrell V. The proteasome activator 11 S REG (PA28) and class I antigen presentation. Biochem. J. 345(Pt 1):2000;1-15.
-
(2000)
Biochem. J.
, vol.345
, Issue.PT 1
, pp. 1-15
-
-
Rechsteiner, M.1
Realini, C.2
Ustrell, V.3
-
30
-
-
0001290045
-
PROSITE: A documented database using patterns and profiles as motif descriptors
-
Sigrist C.J., Cerutti L., Hulo N., Gattiker A., Falquet L., Pagni M., Bairoch A., Bucher P. PROSITE: a documented database using patterns and profiles as motif descriptors. Brief Bioinform. 3:2002;265-274.
-
(2002)
Brief Bioinform.
, vol.3
, pp. 265-274
-
-
Sigrist, C.J.1
Cerutti, L.2
Hulo, N.3
Gattiker, A.4
Falquet, L.5
Pagni, M.6
Bairoch, A.7
Bucher, P.8
-
31
-
-
0036646488
-
PA200, a nuclear proteasome activator involved in DNA repair
-
Ustrell V., Hoffman L., Pratt G., Rechsteiner M. PA200, a nuclear proteasome activator involved in DNA repair. EMBO J. 21:2002;3516-3525.
-
(2002)
EMBO J.
, vol.21
, pp. 3516-3525
-
-
Ustrell, V.1
Hoffman, L.2
Pratt, G.3
Rechsteiner, M.4
-
32
-
-
0032867676
-
The 26S proteasome: A molecular machine designed for controlled proteolysis
-
Voges D., Zwickl P., Baumeister W. The 26S proteasome: a molecular machine designed for controlled proteolysis. Annu. Rev. Biochem. 68:1999;1015-1068.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 1015-1068
-
-
Voges, D.1
Zwickl, P.2
Baumeister, W.3
-
33
-
-
0034597824
-
Structural basis for the activation of 20S proteasomes by 11S regulators
-
Whitby F.G., Masters E.I., Kramer L., Knowlton J.R., Yao Y., Wang C.C., Hill C.P. Structural basis for the activation of 20S proteasomes by 11S regulators. Nature. 408:2000;115-120.
-
(2000)
Nature
, vol.408
, pp. 115-120
-
-
Whitby, F.G.1
Masters, E.I.2
Kramer, L.3
Knowlton, J.R.4
Yao, Y.5
Wang, C.C.6
Hill, C.P.7
-
34
-
-
0034502514
-
Structure of the AAA ATPase p97
-
Zhang X., Shaw A., Bates P.A., Newman R.H., Gowen B., Orlova E., Gorman M.A., Kondo H., Dokurno P., Lally J., Leonard G., Meyer H., van Heel M., Freemont P.S. Structure of the AAA ATPase p97. Mol. Cell. 6:2000;1473-1484.
-
(2000)
Mol. Cell
, vol.6
, pp. 1473-1484
-
-
Zhang, X.1
Shaw, A.2
Bates, P.A.3
Newman, R.H.4
Gowen, B.5
Orlova, E.6
Gorman, M.A.7
Kondo, H.8
Dokurno, P.9
Lally, J.10
Leonard, G.11
Meyer, H.12
Van Heel, M.13
Freemont, P.S.14
|