-
1
-
-
57049151436
-
Epigenetic principles and mechanisms underlying nervous systemfunctions in health and disease
-
Mehler, M.F. 2008. Epigenetic principles and mechanisms underlying nervous systemfunctions in health and disease. Prog. Neurobiol. 86: 305-341.
-
(2008)
Prog. Neurobiol.
, vol.86
, pp. 305-341
-
-
Mehler, M.F.1
-
2
-
-
22844457491
-
DNA methylation and human disease
-
Robertson, K.D. 2005. DNA methylation and human disease. Nat. Rev. Genet. 6: 597-610.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 597-610
-
-
Robertson, K.D.1
-
3
-
-
0035839136
-
Translating the histone code
-
Jenuwein, T. & C.D. Allis. 2001. Translating the histone code. Science 293: 1074-1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
4
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. 2007. Chromatin modifications and their function. Cell 128: 693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
5
-
-
65249157050
-
Epigenetics, DNA methylation, and chromatin modifying drugs
-
Szyf, M. 2009. Epigenetics, DNA methylation, and chromatin modifying drugs. Annu. Rev. Pharmacol. Toxicol. 49: 243-263.
-
(2009)
Annu. Rev. Pharmacol. Toxicol.
, vol.49
, pp. 243-263
-
-
Szyf, M.1
-
6
-
-
70249121045
-
The logic of chromatin architecture and remodelling at promoters
-
Cairns, B.R. 2009. The logic of chromatin architecture and remodelling at promoters. Nature 461: 193-198.
-
(2009)
Nature
, vol.461
, pp. 193-198
-
-
Cairns, B.R.1
-
7
-
-
69249216410
-
A 'higher order' of telomere regulation: telomere heterochromatin and telomeric RNAs
-
Schoeftner, S. & M.A. Blasco. 2009. A 'higher order' of telomere regulation: telomere heterochromatin and telomeric RNAs. EMBO J. 28: 2323-2336.
-
(2009)
EMBO J
, vol.28
, pp. 2323-2336
-
-
Schoeftner, S.1
Blasco, M.A.2
-
8
-
-
44349186294
-
Epigenetic regulation of heterochromatic DNA stability
-
Peng, J.C. & G.H. Karpen. 2008. Epigenetic regulation of heterochromatic DNA stability. Curr. Opin. Genet. Dev. 18: 204-211.
-
(2008)
Curr. Opin. Genet. Dev.
, vol.18
, pp. 204-211
-
-
Peng, J.C.1
Karpen, G.H.2
-
9
-
-
58549109636
-
X chromosome dosage compensation: how mammals keep the balance
-
Payer, B. & J.T. Lee. 2008. X chromosome dosage compensation: how mammals keep the balance. Annu. Rev. Genet. 42: 733-772.
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 733-772
-
-
Payer, B.1
Lee, J.T.2
-
10
-
-
59849088220
-
RNA regulation of epigenetic processes
-
Mattick, J.S. et al. 2009. RNA regulation of epigenetic processes. Bioessays 31: 51-59.
-
(2009)
Bioessays
, vol.31
, pp. 51-59
-
-
Mattick, J.S.1
-
11
-
-
70350126990
-
Regulation of noncoding RNA networks in the nervous system-what's the REST of the story?
-
Qureshi, I.A. & M.F. Mehler. 2009. Regulation of noncoding RNA networks in the nervous system-what's the REST of the story? Neurosci. Lett. 466: 73-80.
-
(2009)
Neurosci. Lett.
, vol.466
, pp. 73-80
-
-
Qureshi, I.A.1
Mehler, M.F.2
-
12
-
-
71849119231
-
Nuclear organization in the 3D space of the nucleus -cause or consequence?
-
Nunez, E., X.D. Fu & M.G. Rosenfeld. 2009. Nuclear organization in the 3D space of the nucleus - cause or consequence? Curr. Opin. Genet. Dev. 19: 424-436.
-
(2009)
Curr. Opin. Genet. Dev.
, vol.19
, pp. 424-436
-
-
Nunez, E.1
Fu, X.D.2
Rosenfeld, M.G.3
-
14
-
-
33846283384
-
Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions
-
Lanctot, C. et al. 2007. Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nat. Rev. Genet. 8: 104-115.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 104-115
-
-
Lanctot, C.1
-
15
-
-
77956651480
-
Differentiation and large scale spatial organization of the genome
-
Jun 17. [Epub ahead of print]
-
Joffe, B., H. Leonhardt & I. Solovei. 2010. Differentiation and large scale spatial organization of the genome. Curr. Opin. Genet. Dev. Jun 17. [Epub ahead of print].
-
(2010)
Curr. Opin. Genet. Dev
-
-
Joffe, B.1
Leonhardt, H.2
Solovei, I.3
-
16
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci, P. et al. 2005. The transcriptional landscape of the mammalian genome. Science 309: 1559-1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
-
17
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama, S. et al. 2005. Antisense transcription in the mammalian transcriptome. Science 309: 1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
-
18
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney, E. et al. 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447: 799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
-
19
-
-
73949085491
-
Non-coding RNAs: regulators of disease
-
Taft, R.J. et al. 2010. Non-coding RNAs: regulators of disease. J. Pathol. 220: 126-139.
-
(2010)
J. Pathol.
, vol.220
, pp. 126-139
-
-
Taft, R.J.1
-
21
-
-
77951922861
-
Molecular diversity through RNA editing: a balancing act
-
Farajollahi, S.&S.Maas. 2010.Molecular diversity through RNA editing: a balancing act. Trends Genet. 26: 221-230.
-
(2010)
Trends Genet
, vol.26
, pp. 221-230
-
-
Farajollahi, S.1
Maas, S.2
-
22
-
-
0035146907
-
Transcriptional repression, apoptosis, human disease and the functional evolution of the nuclear lamina
-
Cohen, M. et al. 2001. Transcriptional repression, apoptosis, human disease and the functional evolution of the nuclear lamina. Trends Biochem. Sci. 26: 41-47.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 41-47
-
-
Cohen, M.1
-
23
-
-
0036178210
-
Homozygous defects in LMNA, encoding lamin A/C nuclear-envelope proteins, cause autosomal recessive axonal neuropathy in human (Charcot-Marie-Tooth disorder type 2) and mouse
-
De Sandre-Giovannoli, A. et al. 2002. Homozygous defects in LMNA, encoding lamin A/C nuclear-envelope proteins, cause autosomal recessive axonal neuropathy in human (Charcot-Marie-Tooth disorder type 2) and mouse. Am. J. Hum. Genet. 70: 726-736.
-
(2002)
Am. J. Hum. Genet.
, vol.70
, pp. 726-736
-
-
De Sandre-Giovannoli, A.1
-
24
-
-
28744442194
-
Induction of inclusion formation and disruption of lamin A/C structure by premutation CGG-repeat RNA in human cultured neural cells
-
Arocena, D.G. et al. 2005. Induction of inclusion formation and disruption of lamin A/C structure by premutation CGG-repeat RNA in human cultured neural cells. Hum. Mol. Genet. 14: 3661-3671.
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 3661-3671
-
-
Arocena, D.G.1
-
25
-
-
33749045115
-
Lamin B1 duplications cause autosomal dominant leukodystrophy
-
Padiath, Q.S. et al. 2006. Lamin B1 duplications cause autosomal dominant leukodystrophy. Nat. Genet. 38: 1114-1123.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1114-1123
-
-
Padiath, Q.S.1
-
26
-
-
33644916708
-
Nuclear pore complex proteins in Alzheimer disease
-
Sheffield, L.G. et al. 2006.Nuclear pore complex proteins in Alzheimer disease. J. Neuropathol. Exp. Neurol. 65: 45-54.
-
(2006)
J. Neuropathol. Exp. Neurol.
, vol.65
, pp. 45-54
-
-
Sheffield, L.G.1
-
27
-
-
33745016642
-
Mutant nuclear laminAleads to progressive alterations of epigenetic control in premature aging
-
Shumaker, D.K. et al. 2006.Mutant nuclear laminAleads to progressive alterations of epigenetic control in premature aging. Proc. Natl. Acad. Sci. USA 103: 8703-8708.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 8703-8708
-
-
Shumaker, D.K.1
-
28
-
-
33750619522
-
Pre-neurodegeneration of mitral cells in the pcd mutant mouse is associated with DNA damage, transcriptional repression, and reorganization of nuclear speckles and Cajal bodies
-
Valero, J. et al. 2006. Pre-neurodegeneration of mitral cells in the pcd mutant mouse is associated with DNA damage, transcriptional repression, and reorganization of nuclear speckles and Cajal bodies. Mol. Cell Neurosci. 33: 283-295.
-
(2006)
Mol. Cell Neurosci.
, vol.33
, pp. 283-295
-
-
Valero, J.1
-
30
-
-
45549092483
-
Role of DNA dynamics in Alzheimer's disease
-
Vasudevaraju, P. et al. 2008. Role of DNA dynamics in Alzheimer's disease. Brain Res. Rev. 58: 136-148.
-
(2008)
Brain Res. Rev
, vol.58
, pp. 136-148
-
-
Vasudevaraju, P.1
-
31
-
-
53249095885
-
Nuclear bodies in neurodegenerative disease
-
Woulfe, J. 2008. Nuclear bodies in neurodegenerative disease. Biochim. Biophys. Acta. 1783: 2195-2206.
-
(2008)
Biochim. Biophys. Acta.
, vol.1783
, pp. 2195-2206
-
-
Woulfe, J.1
-
32
-
-
77951196062
-
Cohesinopathies, gene expression, andchromatin organization
-
Bose, T. & J.L. Gerton. 2010. Cohesinopathies, gene expression, andchromatin organization. J. Cell Biol. 189: 201-210.
-
(2010)
J. Cell Biol.
, vol.189
, pp. 201-210
-
-
Bose, T.1
Gerton, J.L.2
-
33
-
-
70449535896
-
Co-localization of the amyloid precursor protein and Notch intracellular domains in nuclear transcription factories
-
Konietzko, U. et al. 2010. Co-localization of the amyloid precursor protein and Notch intracellular domains in nuclear transcription factories. Neurobiol. Aging. 31: 58-73.
-
(2010)
Neurobiol. Aging.
, vol.31
, pp. 58-73
-
-
Konietzko, U.1
-
36
-
-
34548432104
-
Raising the estimate of functional human sequences
-
Pheasant, M. & J.S. Mattick. 2007. Raising the estimate of functional human sequences. Genome. Res. 17: 1245-1253.
-
(2007)
Genome. Res.
, vol.17
, pp. 1245-1253
-
-
Pheasant, M.1
Mattick, J.S.2
-
37
-
-
70249129382
-
Implications of chimaeric non-colinear transcripts
-
Gingeras, T.R. 2009. Implications of chimaeric non-colinear transcripts. Nature 461: 206-211.
-
(2009)
Nature
, vol.461
, pp. 206-211
-
-
Gingeras, T.R.1
-
38
-
-
70349306246
-
Asystems biology approach to understanding cis-regulatory module function
-
Jeziorska, D.M., K.W. Jordan&K.W.Vance. 2009.Asystems biology approach to understanding cis-regulatory module function. Semin. Cell Dev. Biol. 20: 856-862.
-
(2009)
Semin. Cell Dev. Biol.
, vol.20
, pp. 856-862
-
-
Jeziorska, D.M.1
Jordan, K.W.2
Vance, K.W.3
-
39
-
-
34250369629
-
Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions
-
Denoeud, F. et al. 2007. Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome. Res. 17: 746-759.
-
(2007)
Genome. Res.
, vol.17
, pp. 746-759
-
-
Denoeud, F.1
-
40
-
-
77149139820
-
Enhancers: the abundance and function of regulatory sequences beyond promoters
-
Bulger, M.&M.Groudine. 2010. Enhancers: the abundance and function of regulatory sequences beyond promoters. Dev. Biol. 339: 250-257.
-
(2010)
Dev. Biol.
, vol.339
, pp. 250-257
-
-
Bulger, M.1
Groudine, M.2
-
41
-
-
70349542588
-
Close encounters of the 3C kind: long-range chromatin interactions and transcriptional regulation
-
Theo Sijtse Palstra, R.J. 2009. Close encounters of the 3C kind: long-range chromatin interactions and transcriptional regulation. Brief Funct. Genomic. Proteomic. 8: 297-309.
-
(2009)
Brief Funct. Genomic. Proteomic.
, vol.8
, pp. 297-309
-
-
Theo Sijtse Palstra, R.J.1
-
42
-
-
35548990188
-
We gather together: insulators and genome organization
-
Wallace, J.A. & G. Felsenfeld. 2007. We gather together: insulators and genome organization. Curr. Opin. Genet. Dev. 17: 400-407.
-
(2007)
Curr. Opin. Genet. Dev.
, vol.17
, pp. 400-407
-
-
Wallace, J.A.1
Felsenfeld, G.2
-
43
-
-
74949102277
-
DoesCTCF mediate between nuclear organization and gene expression?
-
Ohlsson, R., V. Lobanenkov&E.Klenova. 2010. DoesCTCF mediate between nuclear organization and gene expression? Bioessays 32: 37-50.
-
(2010)
Bioessays
, vol.32
, pp. 37-50
-
-
Ohlsson, R.1
Lobanenkov, V.2
Klenova, E.3
-
44
-
-
77952563619
-
Insulators and promoters: closer than we think
-
Raab, J.R. & R.T. Kamakaka. 2010. Insulators and promoters: closer than we think. Nat. Rev. Genet. 11: 439-446.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 439-446
-
-
Raab, J.R.1
Kamakaka, R.T.2
-
45
-
-
34247341747
-
H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state
-
Brickner, D.G. et al. 2007. H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state. PLoS Biol. 5: e81.
-
(2007)
PLoS Biol
, vol.5
-
-
Brickner, D.G.1
-
46
-
-
17644369665
-
Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division
-
Chow, C.M. et al. 2005. Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division. EMBO Rep. 6: 354-360.
-
(2005)
EMBO Rep
, vol.6
, pp. 354-360
-
-
Chow, C.M.1
-
47
-
-
77649099092
-
Distinct factors control histone variant H3.3 localization at specific genomic regions
-
Goldberg, A.D. et al. 2010. Distinct factors control histone variant H3.3 localization at specific genomic regions. Cell 140: 678-691.
-
(2010)
Cell
, vol.140
, pp. 678-691
-
-
Goldberg, A.D.1
-
48
-
-
33749157645
-
Nuclear and chromatin reorganization in the MHC-Oct3/4 locus at developmental phases of embryonic stem cell differentiation
-
Aoto, T. et al. 2006. Nuclear and chromatin reorganization in the MHC-Oct3/4 locus at developmental phases of embryonic stem cell differentiation. Dev. Biol. 298: 354-367.
-
(2006)
Dev. Biol.
, vol.298
, pp. 354-367
-
-
Aoto, T.1
-
49
-
-
77954041258
-
REST andCoREST modulate neuronal subtype specification, maturation and maintenance
-
Abrajano, J.J. et al. 2009. REST andCoREST modulate neuronal subtype specification, maturation and maintenance. PLoS One. 4: e7936.
-
(2009)
PLoS One
, vol.4
-
-
Abrajano, J.J.1
-
50
-
-
70449578270
-
Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation
-
Abrajano, J.J. et al. 2009. Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation. PLoS One 4: e7665.
-
(2009)
PLoS One
, vol.4
-
-
Abrajano, J.J.1
-
51
-
-
70350460793
-
Deconstructing the dogma: a new view of the evolution and genetic programming of complex organisms
-
Mattick, J.S. 2009. Deconstructing the dogma: a new view of the evolution and genetic programming of complex organisms. Ann. N.Y. Acad. Sci. 1178: 29-46.
-
(2009)
Ann. N.Y. Acad. Sci.
, vol.1178
, pp. 29-46
-
-
Mattick, J.S.1
-
52
-
-
77952487819
-
Jumping genes and epigenetics: Towards new species
-
Rebollo, R. et al. 2010. Jumping genes and epigenetics: Towards new species. Gene 454: 1-7.
-
(2010)
Gene
, vol.454
, pp. 1-7
-
-
Rebollo, R.1
-
53
-
-
69349096044
-
L1 retrotransposition in human neural progenitor cells
-
Coufal, N.G. et al. 2009. L1 retrotransposition in human neural progenitor cells. Nature 460: 1127-1131.
-
(2009)
Nature
, vol.460
, pp. 1127-1131
-
-
Coufal, N.G.1
-
54
-
-
67349173665
-
The regulated retrotransposon transcriptome of mammalian cells
-
Faulkner, G.J. et al. 2009. The regulated retrotransposon transcriptome of mammalian cells. Nat. Genet. 41: 563-571.
-
(2009)
Nat. Genet.
, vol.41
, pp. 563-571
-
-
Faulkner, G.J.1
-
55
-
-
63149101534
-
Small regulatory RNAs in neurodevelopmental disorders
-
Chang, S. et al. 2009. Small regulatory RNAs in neurodevelopmental disorders. Hum. Mol. Genet. 18: R18-R26.
-
(2009)
Hum. Mol. Genet.
, vol.18
-
-
Chang, S.1
-
56
-
-
70350238350
-
The biogenesis and function of PIWI proteins and piRNAs: progress and prospect
-
Thomson, T.&H. Lin. 2009. The biogenesis and function of PIWI proteins and piRNAs: progress and prospect. Annu. Rev. Cell Dev. Biol. 25: 355-376.
-
(2009)
Annu. Rev. Cell Dev. Biol.
, vol.25
, pp. 355-376
-
-
Thomson, T.1
Lin, H.2
-
57
-
-
65549118489
-
Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies
-
Li, C. et al. 2009. Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. Cell 137: 509-521.
-
(2009)
Cell
, vol.137
, pp. 509-521
-
-
Li, C.1
-
58
-
-
67651034231
-
Fine-tuning neural gene expression with microRNAs
-
Schratt, G. 2009. Fine-tuning neural gene expression with microRNAs. Curr. Opin. Neurobiol. 19: 213-219.
-
(2009)
Curr. Opin. Neurobiol.
, vol.19
, pp. 213-219
-
-
Schratt, G.1
-
59
-
-
77952581350
-
Long noncodingRNAs in nervous systemfunction and disease
-
Qureshi, I.A., J.S. Mattick & M.F.Mehler. 2010. Long noncodingRNAs in nervous systemfunction and disease. Brain Res. 1338: 20-35.
-
(2010)
Brain Res
, vol.1338
, pp. 20-35
-
-
Qureshi, I.A.1
Mattick, J.S.2
Mehler, M.F.3
-
61
-
-
38649114329
-
Specific expression of long noncoding RNAs in themouse brain
-
Mercer, T.R. et al. 2008. Specific expression of long noncoding RNAs in themouse brain. Proc.Natl. Acad. Sci. USA 105: 716-721.
-
(2008)
Proc.Natl. Acad. Sci. USA
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
-
62
-
-
70149123708
-
Genomic and transcriptional colocalization of protein-coding and long non-coding RNA pairs in the developing brain
-
Ponjavic, J. et al. 2009. Genomic and transcriptional colocalization of protein-coding and long non-coding RNA pairs in the developing brain. PLoS Genet. 5: e1000617.
-
(2009)
PLoS Genet
, vol.5
-
-
Ponjavic, J.1
-
63
-
-
70350772348
-
MicroRNAs potentiate neural development
-
Fineberg, S.K., K.S. Kosik & B.L. Davidson. 2009. MicroRNAs potentiate neural development. Neuron 64: 303-309.
-
(2009)
Neuron
, vol.64
, pp. 303-309
-
-
Fineberg, S.K.1
Kosik, K.S.2
Davidson, B.L.3
-
64
-
-
40649106258
-
Non-coding RNAs in imprinted gene clusters
-
Royo, H. & J. Cavaille. 2008. Non-coding RNAs in imprinted gene clusters. Biol Cell 100: 149-166.
-
(2008)
Biol Cell
, vol.100
, pp. 149-166
-
-
Royo, H.1
Cavaille, J.2
-
65
-
-
34249724360
-
Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease
-
Mehler, M.F. & J.S. Mattick. 2007. Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease. Physiol. Rev. 87: 799-823.
-
(2007)
Physiol. Rev
, vol.87
, pp. 799-823
-
-
Mehler, M.F.1
Mattick, J.S.2
-
66
-
-
76649122999
-
Long noncodingRNAs in neuronalglial fate specification and oligodendrocyte lineage maturation
-
Mercer, T.R. et al. 2010. Long noncodingRNAs in neuronalglial fate specification and oligodendrocyte lineage maturation. BMC Neurosci. 11: 14.
-
(2010)
BMC Neurosci
, vol.11
, pp. 14
-
-
Mercer, T.R.1
-
67
-
-
50649118350
-
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
-
Dinger, M.E. et al. 2008. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res. 18: 1433-1445.
-
(2008)
Genome Res
, vol.18
, pp. 1433-1445
-
-
Dinger, M.E.1
-
68
-
-
75149163987
-
Conserved long noncoding RNAs transcriptionally regulated byOct4 andNanogmodulate pluripotency in mouse embryonic stem cells
-
Sheik Mohamed, J. et al. 2010. Conserved long noncoding RNAs transcriptionally regulated byOct4 andNanogmodulate pluripotency in mouse embryonic stem cells. RNA 16: 324-337.
-
(2010)
RNA
, vol.16
, pp. 324-337
-
-
Sheik Mohamed, J.1
-
69
-
-
77952293063
-
Functions and Regulation ofRNAEditing by ADAR Deaminases
-
Nishikura, K. 2009. Functions and Regulation ofRNAEditing by ADAR Deaminases. Annu. Rev. Biochem. 79: 321-349.
-
(2009)
Annu. Rev. Biochem.
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
70
-
-
77955455395
-
Adenosine-to-inosineRNAediting shapes transcriptome diversity in primates
-
Paz-Yaacov, N. et al. 2010.Adenosine-to-inosineRNAediting shapes transcriptome diversity in primates. Proc. Natl. Acad. Sci. USA 107: 12174-12179.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 12174-12179
-
-
Paz-Yaacov, N.1
-
71
-
-
61349086000
-
Activation of toll-like receptor-3 induces interferon-lambda expression in human neuronal cells
-
Zhou, L. et al. 2009. Activation of toll-like receptor-3 induces interferon-lambda expression in human neuronal cells. Neuroscience 159: 629-637.
-
(2009)
Neuroscience
, vol.159
, pp. 629-637
-
-
Zhou, L.1
-
72
-
-
34250870205
-
APOBEC3 proteins: major players in intracellular defence against LINE-1-mediated retrotransposition
-
Schumann, G.G. 2007. APOBEC3 proteins: major players in intracellular defence against LINE-1-mediated retrotransposition. Biochem. Soc. Trans. 35: 637-642.
-
(2007)
Biochem. Soc. Trans.
, vol.35
, pp. 637-642
-
-
Schumann, G.G.1
-
74
-
-
76649143072
-
Assessment of the role of MAP kinase in mediating activity-dependent transcriptional activation of the immediate early gene Arc/Arg3.1 in the dentate gyrus in vivo
-
Chotiner, J.K. et al. 2010. Assessment of the role of MAP kinase in mediating activity-dependent transcriptional activation of the immediate early gene Arc/Arg3.1 in the dentate gyrus in vivo. Learn Mem. 17: 117-129.
-
(2010)
Learn Mem
, vol.17
, pp. 117-129
-
-
Chotiner, J.K.1
-
75
-
-
72149095755
-
Eukaryotic stress granules: the ins and outs of translation
-
Buchan, J.R. & R. Parker. 2009. Eukaryotic stress granules: the ins and outs of translation. Mol. Cell. 36: 932-941.
-
(2009)
Mol. Cell.
, vol.36
, pp. 932-941
-
-
Buchan, J.R.1
Parker, R.2
-
76
-
-
66249103703
-
RNA granules: posttranscriptional and epigenetic modulators of gene expression
-
Anderson, P. & N. Kedersha. 2009. RNA granules: posttranscriptional and epigenetic modulators of gene expression. Nat. Rev. Mol. Cell Biol. 10: 430-436.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 430-436
-
-
Anderson, P.1
Kedersha, N.2
-
78
-
-
60049097909
-
The ribonome: a dominant force in co-ordinating gene expression
-
Mansfield, K.D.&J.D. Keene. 2009. The ribonome: a dominant force in co-ordinating gene expression. Biol. Cell. 101: 169-181.
-
(2009)
Biol. Cell.
, vol.101
, pp. 169-181
-
-
Mansfield, K.D.1
Keene, J.D.2
-
79
-
-
33750681957
-
eIF4E is a central node of an RNA regulon that governs cellular proliferation
-
Culjkovic, B. et al. 2006. eIF4E is a central node of an RNA regulon that governs cellular proliferation. J. Cell Biol. 175: 415-426.
-
(2006)
J. Cell Biol.
, vol.175
, pp. 415-426
-
-
Culjkovic, B.1
-
81
-
-
0141483742
-
Transport of dsRNA into cells by the transmembrane protein SID-1
-
Feinberg, E.H. & C.P. Hunter. 2003. Transport of dsRNA into cells by the transmembrane protein SID-1. Science 301: 1545-1547.
-
(2003)
Science
, vol.301
, pp. 1545-1547
-
-
Feinberg, E.H.1
Hunter, C.P.2
-
82
-
-
69849086481
-
Exosome release by primary B cells
-
McLellan, A.D. 2009. Exosome release by primary B cells. Crit. Rev. Immunol. 29: 203-217.
-
(2009)
Crit. Rev. Immunol.
, vol.29
, pp. 203-217
-
-
McLellan, A.D.1
-
83
-
-
78149340134
-
DoNeural CellsCommunicatewith Endothelial Cells via Secretory Exosomes and Microvesicles?
-
Article ID 383086
-
Smalheiser, N.R. 2009. DoNeural CellsCommunicatewith Endothelial Cells via Secretory Exosomes and Microvesicles? Cardiovasc. Psychiatry Neurol. Article ID 383086.
-
(2009)
Cardiovasc Psychiatry Neurol
-
-
Smalheiser, N.R.1
-
84
-
-
52449130135
-
Noncoding RNAs in long-term memory formation
-
Mercer, T.R. et al. 2008. Noncoding RNAs in long-term memory formation. Neuroscientist 14: 434-445.
-
(2008)
Neuroscientist
, vol.14
, pp. 434-445
-
-
Mercer, T.R.1
-
85
-
-
75749091133
-
Microfluidic isolation and transcriptome analysis of serum microvesicles
-
Chen, C. et al. 2010. Microfluidic isolation and transcriptome analysis of serum microvesicles. Lab Chip 10: 505-511.
-
(2010)
Lab Chip
, vol.10
, pp. 505-511
-
-
Chen, C.1
-
86
-
-
57049103401
-
Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers
-
Skog, J. et al. 2008. Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers. Nat. Cell Biol. 10: 1470-1476.
-
(2008)
Nat. Cell Biol.
, vol.10
, pp. 1470-1476
-
-
Skog, J.1
-
87
-
-
48249125095
-
Structural principles from large RNAs
-
Holbrook, S.R. 2008. Structural principles from large RNAs. Annu. Rev. Biophys. 37: 445-464.
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 445-464
-
-
Holbrook, S.R.1
-
88
-
-
29444457713
-
Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
-
Pang, K.C., M.C. Frith & J.S. Mattick. 2006. Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends Genet. 22: 1-5.
-
(2006)
Trends Genet
, vol.22
, pp. 1-5
-
-
Pang, K.C.1
Frith, M.C.2
Mattick, J.S.3
-
89
-
-
54549105804
-
S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum
-
Andre, G. et al. 2008. S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum. Nucleic Acids Res. 36: 5955-5969.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5955-5969
-
-
Andre, G.1
-
90
-
-
42149091618
-
Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine
-
Wang, J.X. & R.R. Breaker. 2008. Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine. Biochem. Cell Biol. 86: 157-168.
-
(2008)
Biochem. Cell Biol.
, vol.86
, pp. 157-168
-
-
Wang, J.X.1
Breaker, R.R.2
-
91
-
-
84897585709
-
In-line probing analysis of riboswitches
-
Regulski, E.E.&R.R.Breaker. 2008. In-line probing analysis of riboswitches. Methods Mol. Biol. 419: 53-67.
-
(2008)
Methods Mol. Biol.
, vol.419
, pp. 53-67
-
-
Regulski, E.E.1
Breaker, R.R.2
-
92
-
-
46349083026
-
The distributions,mechanisms, and structures of metabolite-binding riboswitches
-
Barrick, J.E.&R.R. Breaker. 2007. The distributions,mechanisms, and structures of metabolite-binding riboswitches. Genome Biol. 8: R239.
-
(2007)
Genome Biol
, vol.8
-
-
Barrick, J.E.1
Breaker, R.R.2
-
93
-
-
36549083651
-
RNA catalysis: ribozymes, ribosomes, and riboswitches
-
Strobel, S.A. & J.C. Cochrane. 2007. RNA catalysis: ribozymes, ribosomes, and riboswitches. Curr. Opin. Chem. Biol. 11: 636-643.
-
(2007)
Curr. Opin. Chem. Biol.
, vol.11
, pp. 636-643
-
-
Strobel, S.A.1
Cochrane, J.C.2
-
95
-
-
34250613153
-
Sensing metabolic signals with nascent RNA transcripts: the T box and S box riboswitches as paradigms
-
Henkin, T.M. & F.J. Grundy. 2006. Sensing metabolic signals with nascent RNA transcripts: the T box and S box riboswitches as paradigms. Cold Spring Harb. Symp. Quant Biol. 71: 231-237.
-
(2006)
Cold Spring Harb. Symp. Quant Biol.
, vol.71
, pp. 231-237
-
-
Henkin, T.M.1
Grundy, F.J.2
-
96
-
-
33746361251
-
The role of iron regulatory proteins in mammalian iron homeostasis and disease
-
Rouault, T.A. 2006. The role of iron regulatory proteins in mammalian iron homeostasis and disease. Nat. Chem. Biol. 2: 406-414.
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 406-414
-
-
Rouault, T.A.1
-
97
-
-
59149101704
-
Iron and the translation of the amyloid precursor protein (APP) and ferritinmRNAs: riboregulation against neural oxidative damage in Alzheimer's disease
-
Rogers, J.T. et al. 2008. Iron and the translation of the amyloid precursor protein (APP) and ferritinmRNAs: riboregulation against neural oxidative damage in Alzheimer's disease. Biochem. Soc. Trans. 36: 1282-1287.
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 1282-1287
-
-
Rogers, J.T.1
-
98
-
-
34347205992
-
Z-DNA, an active element in the genome
-
Wang, G. & K.M. Vasquez. 2007. Z-DNA, an active element in the genome. Front Biosci. 12: 4424-4438.
-
(2007)
Front Biosci
, vol.12
, pp. 4424-4438
-
-
Wang, G.1
Vasquez, K.M.2
-
99
-
-
33645228949
-
Cooperative activity of BRG1 and ZDNA formation in chromatin remodeling
-
Liu, H. et al. 2006. Cooperative activity of BRG1 and ZDNA formation in chromatin remodeling. Mol. Cell Biol. 26: 2550-2559.
-
(2006)
Mol. Cell Biol.
, vol.26
, pp. 2550-2559
-
-
Liu, H.1
-
100
-
-
34047263964
-
A left-handed RNA double helix bound by the Z alpha domain of the RNA-editing enzyme ADAR1
-
Placido, D. et al. 2007. A left-handed RNA double helix bound by the Z alpha domain of the RNA-editing enzyme ADAR1. Structure 15: 395-404.
-
(2007)
Structure
, vol.15
, pp. 395-404
-
-
Placido, D.1
-
104
-
-
0035316574
-
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
-
Cremer, T. & C. Cremer. 2001. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat. Rev. Genet. 2: 292-301.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 292-301
-
-
Cremer, T.1
Cremer, C.2
-
105
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E. et al. 2009. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326: 289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
106
-
-
33748289518
-
Characterization of the Drosophila melanogaster genome at the nuclear lamina
-
Pickersgill, H. et al. 2006. Characterization of the Drosophila melanogaster genome at the nuclear lamina. Nat. Genet. 38: 1005-1014.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1005-1014
-
-
Pickersgill, H.1
-
107
-
-
38349043904
-
A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence
-
Kumaran, R.I. & D.L. Spector. 2008. A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence. J. Cell Biol. 180: 51-65.
-
(2008)
J. Cell Biol.
, vol.180
, pp. 51-65
-
-
Kumaran, R.I.1
Spector, D.L.2
-
108
-
-
31644436473
-
Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus
-
Williams, R.R. et al. 2006. Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus. J. Cell Sci. 119: 132-140.
-
(2006)
J. Cell Sci.
, vol.119
, pp. 132-140
-
-
Williams, R.R.1
-
109
-
-
1842855742
-
Nuclear organization in differentiating oligodendrocytes
-
Nielsen, J.A., L.D. Hudson & R.C. Armstrong. 2002. Nuclear organization in differentiating oligodendrocytes. J. Cell Sci. 115: 4071-4079.
-
(2002)
J. Cell Sci.
, vol.115
, pp. 4071-4079
-
-
Nielsen, J.A.1
Hudson, L.D.2
Armstrong, R.C.3
-
110
-
-
10944261946
-
Nuclear repositioning marks the selective exclusion of lineage-inappropriate transcription factor loci during T helper cell differentiation
-
Hewitt, S.L. et al. 2004. Nuclear repositioning marks the selective exclusion of lineage-inappropriate transcription factor loci during T helper cell differentiation. Eur. J. Immunol. 34: 3604-3613.
-
(2004)
Eur. J. Immunol.
, vol.34
, pp. 3604-3613
-
-
Hewitt, S.L.1
-
111
-
-
34447627002
-
Regulation and epigenetic control of transcription at the nuclear periphery
-
Ahmed, S.&J.H. Brickner. 2007. Regulation and epigenetic control of transcription at the nuclear periphery. Trends Genet. 23: 396-402.
-
(2007)
Trends Genet
, vol.23
, pp. 396-402
-
-
Ahmed, S.1
Brickner, J.H.2
-
112
-
-
60749090162
-
Transcriptionalmemory at the nuclear periphery
-
Brickner, J.H. 2009. Transcriptionalmemory at the nuclear periphery. Curr. Opin. Cell Biol. 21: 127-133.
-
(2009)
Curr. Opin. Cell Biol.
, vol.21
, pp. 127-133
-
-
Brickner, J.H.1
-
113
-
-
34247279134
-
SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster
-
Kundu, S., P.J. Horn & C.L. Peterson. 2007. SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster. Genes Dev. 21: 997-1004.
-
(2007)
Genes Dev
, vol.21
, pp. 997-1004
-
-
Kundu, S.1
Horn, P.J.2
Peterson, C.L.3
-
114
-
-
72749098124
-
Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex
-
Tan-Wong, S.M., H.D.Wijayatilake&N.J. Proudfoot. 2009. Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex. Genes Dev. 23: 2610-2624.
-
(2009)
Genes Dev
, vol.23
, pp. 2610-2624
-
-
Tan-Wong, S.M.1
Wijayatilake, H.D.2
Proudfoot, N.J.3
-
115
-
-
72749122014
-
A physiological role for gene loops in yeast
-
Laine, J.P. et al. 2009. A physiological role for gene loops in yeast. Genes Dev. 23: 2604-2609.
-
(2009)
Genes Dev
, vol.23
, pp. 2604-2609
-
-
Laine, J.P.1
-
116
-
-
2142650203
-
Nuclear substructure and dynamics
-
Lamond, A.I. & J.E. Sleeman. 2003. Nuclear substructure and dynamics. Curr. Biol. 13: R825-828.
-
(2003)
Curr. Biol.
, vol.13
-
-
Lamond, A.I.1
Sleeman, J.E.2
-
117
-
-
34548210885
-
Myc dynamically and preferentially relocates to a transcription factory occupied by Igh
-
Osborne, C.S. et al. 2007. Myc dynamically and preferentially relocates to a transcription factory occupied by Igh. PLoS Biol. 5: e192.
-
(2007)
PLoS Biol
, vol.5
-
-
Osborne, C.S.1
-
118
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
Schoenfelder, S. et al. 2010. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nat. Genet. 42: 53-61.
-
(2010)
Nat. Genet.
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
-
119
-
-
67650541845
-
Chromosome conformation capture of all 13 genomic Loci in the transcriptional regulation of the multisubunit bigenomic cytochrome C oxidase in neurons
-
Dhar, S.S., S. Ongwijitwat&M.T.Wong-Riley. 2009. Chromosome conformation capture of all 13 genomic Loci in the transcriptional regulation of the multisubunit bigenomic cytochrome C oxidase in neurons. J. Biol. Chem. 284: 18644-18650.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 18644-18650
-
-
Dhar, S.S.1
Ongwijitwat, S.2
Wong-Riley, M.T.3
-
120
-
-
75749100247
-
Poised transcription factories prime silent uPA gene prior to activation
-
Ferrai, C. et al. 2010. Poised transcription factories prime silent uPA gene prior to activation. PLoS Biol. 8: e1000270.
-
(2010)
PLoS Biol
, vol.8
-
-
Ferrai, C.1
-
121
-
-
0033546210
-
The organization of replication and transcription
-
Cook, P.R. 1999. The organization of replication and transcription. Science 284: 1790-1795.
-
(1999)
Science
, vol.284
, pp. 1790-1795
-
-
Cook, P.R.1
-
122
-
-
14644433739
-
Dynamics and compartmentation of the nucleolar processing machinery
-
Louvet, E. et al. 2005. Dynamics and compartmentation of the nucleolar processing machinery. Exp. Cell Res. 304: 457-470.
-
(2005)
Exp. Cell Res.
, vol.304
, pp. 457-470
-
-
Louvet, E.1
-
123
-
-
18244366043
-
Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition
-
Shav-Tal, Y. et al. 2005. Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition. Mol. Biol. Cell. 16: 2395-2413.
-
(2005)
Mol. Biol. Cell.
, vol.16
, pp. 2395-2413
-
-
Shav-Tal, Y.1
-
124
-
-
55849109584
-
The epigenetics of rRNA genes: from molecular to chromosome biology
-
McStay, B. & I. Grummt. 2008. The epigenetics of rRNA genes: from molecular to chromosome biology. Annu. Rev. Cell Dev. Biol. 24: 131-157.
-
(2008)
Annu. Rev. Cell Dev. Biol.
, vol.24
, pp. 131-157
-
-
McStay, B.1
Grummt, I.2
-
125
-
-
33646147563
-
Intergenic transcripts regulate the epigenetic state of rRNA genes
-
Mayer, C. et al. 2006. Intergenic transcripts regulate the epigenetic state of rRNA genes. Mol. Cell. 22: 351-361.
-
(2006)
Mol. Cell.
, vol.22
, pp. 351-361
-
-
Mayer, C.1
-
126
-
-
34547212309
-
The MicroRNA miR-124 promotes neuronal differentiation by triggering brainspecific alternative pre-mRNA splicing
-
Makeyev, E.V. et al. 2007. The MicroRNA miR-124 promotes neuronal differentiation by triggering brainspecific alternative pre-mRNA splicing. Mol. Cell. 27: 435-448.
-
(2007)
Mol. Cell
, vol.27
, pp. 435-448
-
-
Makeyev, E.V.1
-
127
-
-
0035720318
-
Genome wide oscillations in expression. Wavelet analysis of time series data from yeast expression arrays uncovers the dynamic architecture of phenotype
-
Klevecz, R.R. & D.B. Murray. 2001. Genome wide oscillations in expression. Wavelet analysis of time series data from yeast expression arrays uncovers the dynamic architecture of phenotype. Mol. Biol. Rep. 28: 73-82.
-
(2001)
Mol. Biol. Rep.
, vol.28
, pp. 73-82
-
-
Klevecz, R.R.1
Murray, D.B.2
-
129
-
-
44349123569
-
siRNA and miRNA processing: new functions for Cajal bodies
-
Pontes, O. & C.S. Pikaard. 2008. siRNA and miRNA processing: new functions for Cajal bodies. Curr. Opin. Genet. Dev. 18: 197-203.
-
(2008)
Curr. Opin. Genet. Dev.
, vol.18
, pp. 197-203
-
-
Pontes, O.1
Pikaard, C.S.2
-
130
-
-
53249134730
-
Pondering the puzzle of PML (promyelocytic leukemia) nuclear bodies: can we fit the pieces together using anRNAregulon? Biochim
-
Borden, K.L. 2008. Pondering the puzzle of PML (promyelocytic leukemia) nuclear bodies: can we fit the pieces together using anRNAregulon? Biochim. Biophys. Acta. 1783: 2145-2154.
-
(2008)
Biophys. Acta.
, vol.1783
, pp. 2145-2154
-
-
Borden, K.L.1
-
131
-
-
1342291118
-
Loss of the tumor suppressor PML in human cancers of multiple histologic origins
-
Gurrieri, C. et al. 2004. Loss of the tumor suppressor PML in human cancers of multiple histologic origins. J. Natl. Cancer Inst. 96: 269-279.
-
(2004)
J. Natl. Cancer Inst.
, vol.96
, pp. 269-279
-
-
Gurrieri, C.1
-
132
-
-
77449089538
-
A manually curated network of the PML nuclear body interactome reveals an important role for PML-NBs in SUMOylation dynamics
-
Van Damme, E. et al. 2010. A manually curated network of the PML nuclear body interactome reveals an important role for PML-NBs in SUMOylation dynamics. Int. J. Biol. Sci. 6: 51-67.
-
(2010)
Int. J. Biol. Sci.
, vol.6
, pp. 51-67
-
-
Van Damme, E.1
-
133
-
-
0033199695
-
Telomerase-negative immortalized humancells contain a novel type of promyelocytic leukemia (PML) body
-
Yeager, T.R. et al. 1999. Telomerase-negative immortalized humancells contain a novel type of promyelocytic leukemia (PML) body. Cancer Res. 59: 4175-4179.
-
(1999)
Cancer Res
, vol.59
, pp. 4175-4179
-
-
Yeager, T.R.1
-
134
-
-
33845871732
-
Functional interaction between PMLandSATB1regulates chromatin-loop architecture and transcription of theMHCclass I locus
-
Kumar, P.P. et al. 2007. Functional interaction between PMLandSATB1regulates chromatin-loop architecture and transcription of theMHCclass I locus. Nat. Cell Biol. 9: 45-56.
-
(2007)
Nat. Cell Biol.
, vol.9
, pp. 45-56
-
-
Kumar, P.P.1
-
135
-
-
77953955724
-
The death-associated protein DAXX is a novel histone chaperone involved in the replicationindependent deposition of H3.3
-
Drane, P. et al. 2010. The death-associated protein DAXX is a novel histone chaperone involved in the replicationindependent deposition of H3.3. Genes Dev. 24: 1253-1265.
-
(2010)
Genes Dev
, vol.24
, pp. 1253-1265
-
-
Drane, P.1
-
136
-
-
58849151893
-
The tumor suppressor Pml regulates cell fate in the developing neocortex
-
Regad, T. et al. 2009. The tumor suppressor Pml regulates cell fate in the developing neocortex. Nat. Neurosci. 12: 132-140.
-
(2009)
Nat. Neurosci.
, vol.12
, pp. 132-140
-
-
Regad, T.1
-
137
-
-
44349166602
-
PML targeting eradicates quiescent leukaemia-initiating cells
-
Ito, K. et al. 2008. PML targeting eradicates quiescent leukaemia-initiating cells. Nature 453: 1072-1078.
-
(2008)
Nature
, vol.453
, pp. 1072-1078
-
-
Ito, K.1
-
138
-
-
69749099933
-
PML: a tumor suppressor that regulates cell fate in mammary gland
-
Li, W., T. Rich & C.J.Watson. 2009. PML: a tumor suppressor that regulates cell fate in mammary gland. Cell Cycle 8: 2711-2717.
-
(2009)
Cell Cycle
, vol.8
, pp. 2711-2717
-
-
Li, W.1
Rich, T.2
Watson, C.J.3
-
139
-
-
3342966899
-
Proteomic analysis of interchromatin granule clusters
-
Saitoh, N. et al. 2004. Proteomic analysis of interchromatin granule clusters. Mol. Biol. Cell. 15: 3876-3890.
-
(2004)
Mol. Biol. Cell.
, vol.15
, pp. 3876-3890
-
-
Saitoh, N.1
-
140
-
-
62149119245
-
Genome-wide analysis of histidine repeats reveals their role in the localization of human proteins to the nuclear speckles compartment
-
Salichs, E. et al. 2009. Genome-wide analysis of histidine repeats reveals their role in the localization of human proteins to the nuclear speckles compartment. PLoS Genet. 5: e1000397.
-
(2009)
PLoS Genet
, vol.5
-
-
Salichs, E.1
-
141
-
-
52249111620
-
Association between active genes occurs at nuclear speckles and is modulated by chromatin environment
-
Brown, J.M. et al. 2008. Association between active genes occurs at nuclear speckles and is modulated by chromatin environment. J. Cell Biol. 182: 1083-1097.
-
(2008)
J. Cell Biol.
, vol.182
, pp. 1083-1097
-
-
Brown, J.M.1
-
142
-
-
77953695113
-
NeuN/Fox-3 is an intrinsic component of the neuronal nuclear matrix
-
Dent, M.A. et al. 2010. NeuN/Fox-3 is an intrinsic component of the neuronal nuclear matrix. FEBS Lett. 584: 2767-2771.
-
(2010)
FEBS Lett
, vol.584
, pp. 2767-2771
-
-
Dent, M.A.1
-
143
-
-
61849113891
-
MENepsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
-
Sunwoo, H. et al. 2009.MENepsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Res. 19: 347-359.
-
(2009)
Genome Res
, vol.19
, pp. 347-359
-
-
Sunwoo, H.1
-
144
-
-
62549117314
-
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
-
Clemson, C.M. et al. 2009. An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. Mol. Cell. 33: 717-726.
-
(2009)
Mol. Cell.
, vol.33
, pp. 717-726
-
-
Clemson, C.M.1
-
145
-
-
69949132008
-
Paraspeckles: nuclear bodies built on long noncoding RNA
-
Bond, C.S. & A.H. Fox. 2009. Paraspeckles: nuclear bodies built on long noncoding RNA. J. Cell Biol. 186: 637-644.
-
(2009)
J. Cell Biol.
, vol.186
, pp. 637-644
-
-
Bond, C.S.1
Fox, A.H.2
-
146
-
-
62449319486
-
MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles
-
Sasaki, Y.T. et al. 2009. MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles. Proc. Natl. Acad. Sci. USA 106: 2525-2530.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 2525-2530
-
-
Sasaki, Y.T.1
-
147
-
-
0035943347
-
The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs
-
Zhang, Z. & G.G. Carmichael. 2001. The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs. Cell 106: 465-475.
-
(2001)
Cell
, vol.106
, pp. 465-475
-
-
Zhang, Z.1
Carmichael, G.G.2
-
148
-
-
26844440157
-
Regulating gene expression through RNA nuclear retention
-
Prasanth, K.V. et al. 2005. Regulating gene expression through RNA nuclear retention. Cell 123: 249-263.
-
(2005)
Cell
, vol.123
, pp. 249-263
-
-
Prasanth, K.V.1
-
149
-
-
74549125753
-
An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data
-
Ramskold, D. et al. 2009. An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data. PLoS Comput. Biol. 5: e1000598.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Ramskold, D.1
-
150
-
-
68949212914
-
Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA
-
Chen, L.L. & G.G. Carmichael. 2009. Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA. Mol. Cell. 35: 467-478.
-
(2009)
Mol. Cell.
, vol.35
, pp. 467-478
-
-
Chen, L.L.1
Carmichael, G.G.2
-
151
-
-
51349086310
-
Paraspeckle protein p54nrb links Sox9-mediated transcription with RNA processing during chondrogenesis in mice
-
Hata, K. et al. 2008. Paraspeckle protein p54nrb links Sox9-mediated transcription with RNA processing during chondrogenesis in mice. J. Clin. Invest. 118: 3098-3108.
-
(2008)
J. Clin. Invest.
, vol.118
, pp. 3098-3108
-
-
Hata, K.1
-
152
-
-
18244365850
-
PERIOD1-associated proteins modulate the negative limb of the mammalian circadian oscillator
-
Brown, S.A. et al. 2005. PERIOD1-associated proteins modulate the negative limb of the mammalian circadian oscillator. Science 308: 693-696.
-
(2005)
Science
, vol.308
, pp. 693-696
-
-
Brown, S.A.1
-
153
-
-
34548291568
-
The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons
-
Sone, M. et al. 2007. The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. J. Cell Sci. 120: 2498-2506.
-
(2007)
J. Cell Sci.
, vol.120
, pp. 2498-2506
-
-
Sone, M.1
-
155
-
-
33644871486
-
Dynamic nature of cleavage bodies and their spatial relationship to DDX1bodies, Cajal bodies, and gems
-
Li, L. et al. 2006. Dynamic nature of cleavage bodies and their spatial relationship to DDX1bodies, Cajal bodies, and gems. Mol. Biol. Cell. 17: 1126-1140.
-
(2006)
Mol. Biol. Cell.
, vol.17
, pp. 1126-1140
-
-
Li, L.1
-
156
-
-
1342332096
-
Polycomb CBX7 has a unifying role in cellular lifespan
-
Gil, J. et al. 2004. Polycomb CBX7 has a unifying role in cellular lifespan. Nat. Cell Biol. 6: 67-72.
-
(2004)
Nat. Cell Biol
, vol.6
, pp. 67-72
-
-
Gil, J.1
-
157
-
-
0034641739
-
Identification of a nuclear domain with deacetylase activity
-
Downes, M. et al. 2000. Identification of a nuclear domain with deacetylase activity. Proc. Natl. Acad. Sci. USA 97: 10330-10335.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 10330-10335
-
-
Downes, M.1
-
158
-
-
0036678202
-
Clastosome: a subtype of nuclear body enriched in 19S and 20S proteasomes, ubiquitin, and protein substrates of proteasome
-
Lafarga, M. et al. 2002. Clastosome: a subtype of nuclear body enriched in 19S and 20S proteasomes, ubiquitin, and protein substrates of proteasome.Mol. Biol. Cell. 13: 2771-2782.
-
(2002)
Mol. Biol. Cell.
, vol.13
, pp. 2771-2782
-
-
Lafarga, M.1
-
159
-
-
53549091886
-
Arole for DEAD box 1 at DNA double-strand breaks
-
Li, L., E.A.Monckton&R.Godbout. 2008.Arole for DEAD box 1 at DNA double-strand breaks. Mol. Cell Biol. 28: 6413-6425.
-
(2008)
Mol. Cell Biol.
, vol.28
, pp. 6413-6425
-
-
Li, L.1
Monckton, E.A.2
Godbout, R.3
-
160
-
-
44849099042
-
FBXO25-associated nuclear domains: a novel subnuclear structure
-
Manfiolli, A.O. et al. 2008. FBXO25-associated nuclear domains: a novel subnuclear structure. Mol. Biol, Cell. 19: 1848-1861.
-
(2008)
Mol. Biol, Cell.
, vol.19
, pp. 1848-1861
-
-
Manfiolli, A.O.1
-
161
-
-
33646745137
-
Lamin A-dependent nuclear defects in human aging
-
Scaffidi, P. & T. Misteli. 2006. Lamin A-dependent nuclear defects in human aging. Science 312: 1059-1063.
-
(2006)
Science
, vol.312
, pp. 1059-1063
-
-
Scaffidi, P.1
Misteli, T.2
-
162
-
-
0027985787
-
Identification of a novel X-linked gene responsible for Emery-Dreifuss muscular dystrophy
-
Bione, S. et al. 1994. Identification of a novel X-linked gene responsible for Emery-Dreifuss muscular dystrophy. Nat. Genet. 8: 323-327.
-
(1994)
Nat. Genet.
, vol.8
, pp. 323-327
-
-
Bione, S.1
-
163
-
-
33845891591
-
Mutations in SYNE1 lead to a newly discovered form of autosomal recessive cerebellar ataxia
-
Gros-Louis, F. et al. 2007. Mutations in SYNE1 lead to a newly discovered form of autosomal recessive cerebellar ataxia. Nat. Genet. 39: 80-85.
-
(2007)
Nat. Genet.
, vol.39
, pp. 80-85
-
-
Gros-Louis, F.1
-
164
-
-
16944366666
-
The early-onset torsion dystonia gene (DYT1) encodes an ATP-binding protein
-
Ozelius, L.J. et al. 1997. The early-onset torsion dystonia gene (DYT1) encodes an ATP-binding protein. Nat. Genet. 17: 40-48.
-
(1997)
Nat. Genet.
, vol.17
, pp. 40-48
-
-
Ozelius, L.J.1
-
165
-
-
43249124368
-
Expression of themyodystrophic R453W mutation of lamin A in C2C12 myoblasts causes promoter-specific and global epigenetic defects
-
Hakelien, A.M. et al. 2008. Expression of themyodystrophic R453W mutation of lamin A in C2C12 myoblasts causes promoter-specific and global epigenetic defects. Exp. Cell Res. 314: 1869-1880.
-
(2008)
Exp. Cell Res.
, vol.314
, pp. 1869-1880
-
-
Hakelien, A.M.1
-
166
-
-
2942586676
-
The inner nuclear membrane protein lamin B receptor forms distinctmicrodomains and links epigenetically marked chromatin to the nuclear envelope
-
Makatsori, D. et al. 2004. The inner nuclear membrane protein lamin B receptor forms distinctmicrodomains and links epigenetically marked chromatin to the nuclear envelope. J. Biol. Chem. 279: 25567-25573.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 25567-25573
-
-
Makatsori, D.1
-
167
-
-
0036938754
-
Neuropathological analysis of an adult case of the Cornelia de Lange syndrome
-
Vuilleumier, N. et al. 2002. Neuropathological analysis of an adult case of the Cornelia de Lange syndrome. Acta Neuropathol. 104: 327-332.
-
(2002)
Acta Neuropathol
, vol.104
, pp. 327-332
-
-
Vuilleumier, N.1
-
168
-
-
63049083915
-
How cohesin and CTCF cooperate in regulating gene expression
-
Wendt, K.S. & J.M. Peters. 2009. How cohesin and CTCF cooperate in regulating gene expression. Chromosome Res. 17: 201-214.
-
(2009)
Chromosome Res
, vol.17
, pp. 201-214
-
-
Wendt, K.S.1
Peters, J.M.2
-
169
-
-
76149096854
-
Cohesinopathy mutations disrupt the subnuclear organization of chromatin
-
Gard, S. et al. 2009. Cohesinopathy mutations disrupt the subnuclear organization of chromatin. J. Cell Biol. 187: 455-462.
-
(2009)
J. Cell Biol.
, vol.187
, pp. 455-462
-
-
Gard, S.1
-
170
-
-
0028797783
-
Identification and characterization of a spinal muscular atrophy-determining gene
-
Lefebvre, S. et al. 1995. Identification and characterization of a spinal muscular atrophy-determining gene. Cell 80: 155-165.
-
(1995)
Cell
, vol.80
, pp. 155-165
-
-
Lefebvre, S.1
-
171
-
-
56249119910
-
Ribonucleoprotein complexes in neurologic diseases
-
Ule, J. 2008. Ribonucleoprotein complexes in neurologic diseases. Curr. Opin. Neurobiol. 18: 516-523.
-
(2008)
Curr. Opin. Neurobiol.
, vol.18
, pp. 516-523
-
-
Ule, J.1
-
172
-
-
70350635179
-
The SMNprotein is a key regulator of nuclear architecture in differentiating neuroblastoma cells
-
Clelland, A.K. et al. 2009. The SMNprotein is a key regulator of nuclear architecture in differentiating neuroblastoma cells. Traffic 10: 1585-1598.
-
(2009)
Traffic
, vol.10
, pp. 1585-1598
-
-
Clelland, A.K.1
-
173
-
-
38349053826
-
Dual localization of the RNA binding protein CUGBP-1 to stress granule and perinucleolar compartment
-
Fujimura, K., F. Kano&M.Murata. 2008. Dual localization of the RNA binding protein CUGBP-1 to stress granule and perinucleolar compartment. Exp. Cell Res. 314: 543-553.
-
(2008)
Exp. Cell Res.
, vol.314
, pp. 543-553
-
-
Fujimura, K.1
Kano, F.2
Murata, M.3
-
174
-
-
70449356630
-
CDKL5 influences RNA splicing activity by its association to the nuclear speckle molecular machinery
-
Ricciardi, S. et al. 2009. CDKL5 influences RNA splicing activity by its association to the nuclear speckle molecular machinery. Hum. Mol. Genet. 18: 4590-4602.
-
(2009)
Hum. Mol. Genet.
, vol.18
, pp. 4590-4602
-
-
Ricciardi, S.1
-
175
-
-
67650747230
-
TDP-43 localizes in mRNA transcription and processing sites in mammalian neurons
-
Casafont, I. et al. 2009. TDP-43 localizes in mRNA transcription and processing sites in mammalian neurons. J. Struct. Biol. 167: 235-241.
-
(2009)
J. Struct. Biol.
, vol.167
, pp. 235-241
-
-
Casafont, I.1
-
176
-
-
33746073030
-
PML nuclear bodies are highly organised DNA-protein structures with a function in heterochromatin remodelling at the G2 phase
-
Luciani, J.J. et al. 2006. PML nuclear bodies are highly organised DNA-protein structures with a function in heterochromatin remodelling at the G2 phase. J. Cell Sci. 119: 2518-2531.
-
(2006)
J. Cell Sci.
, vol.119
, pp. 2518-2531
-
-
Luciani, J.J.1
-
177
-
-
0029014180
-
Expression analysis of the ataxin-1 protein in tissues from normal and spinocerebellar ataxia type 1 individuals
-
Servadio, A. et al. 1995. Expression analysis of the ataxin-1 protein in tissues from normal and spinocerebellar ataxia type 1 individuals. Nat. Genet. 10: 94-98.
-
(1995)
Nat. Genet.
, vol.10
, pp. 94-98
-
-
Servadio, A.1
-
178
-
-
0035076389
-
Different types of repeat expansion in the TATA-binding protein gene are associated with a new form of inherited ataxia
-
Zuhlke, C. et al. 2001. Different types of repeat expansion in the TATA-binding protein gene are associated with a new form of inherited ataxia. Eur. J. Hum. Genet. 9: 160-164.
-
(2001)
Eur. J. Hum. Genet.
, vol.9
, pp. 160-164
-
-
Zuhlke, C.1
-
179
-
-
0029057336
-
A single ataxia telangiectasia gene with a product similar to PI-3 kinase
-
Savitsky, K. et al. 1995. A single ataxia telangiectasia gene with a product similar to PI-3 kinase. Science 268: 1749-1753.
-
(1995)
Science
, vol.268
, pp. 1749-1753
-
-
Savitsky, K.1
-
180
-
-
18644386254
-
Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy
-
Takashima, H. et al. 2002. Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy. Nat. Genet. 32: 267-272.
-
(2002)
Nat. Genet.
, vol.32
, pp. 267-272
-
-
Takashima, H.1
-
181
-
-
0034785531
-
The gene mutated in ataxiaocular apraxia 1 encodes the new HIT/Zn-finger protein aprataxin
-
Moreira, M.C. et al. 2001. The gene mutated in ataxiaocular apraxia 1 encodes the new HIT/Zn-finger protein aprataxin. Nat. Genet. 29: 189-193.
-
(2001)
Nat. Genet.
, vol.29
, pp. 189-193
-
-
Moreira, M.C.1
|