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Volumn 18, Issue 2, 2008, Pages 197-203

siRNA and miRNA processing: new functions for Cajal bodies

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE; MICRORNA; RNA DIRECTED RNA POLYMERASE; SMALL INTERFERING RNA;

EID: 44349123569     PISSN: 0959437X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gde.2008.01.008     Document Type: Review
Times cited : (95)

References (53)
  • 1
    • 35348996554 scopus 로고    scopus 로고
    • Specialization and evolution of endogenous small RNA pathways
    • Chapman E.J., and Carrington J.C. Specialization and evolution of endogenous small RNA pathways. Nat Rev Genet 8 (2007) 884-896
    • (2007) Nat Rev Genet , vol.8 , pp. 884-896
    • Chapman, E.J.1    Carrington, J.C.2
  • 3
    • 33644768174 scopus 로고    scopus 로고
    • Control of translation and mRNA degradation by miRNAs and siRNAs
    • Valencia-Sanchez M.A., Liu J., Hannon G.J., and Parker R. Control of translation and mRNA degradation by miRNAs and siRNAs. Genes Dev 20 (2006) 515-524
    • (2006) Genes Dev , vol.20 , pp. 515-524
    • Valencia-Sanchez, M.A.1    Liu, J.2    Hannon, G.J.3    Parker, R.4
  • 4
    • 34249304470 scopus 로고    scopus 로고
    • Transcription and RNA interference in the formation of heterochromatin
    • Grewal S.I., and Elgin S.C. Transcription and RNA interference in the formation of heterochromatin. Nature 447 (2007) 399-406
    • (2007) Nature , vol.447 , pp. 399-406
    • Grewal, S.I.1    Elgin, S.C.2
  • 6
    • 34249809690 scopus 로고    scopus 로고
    • RNA-directed DNA methylation mediated by DRD1 and Pol IVb: a versatile pathway for transcriptional gene silencing in plants
    • Huettel B., Kanno T., Daxinger L., Bucher E., van der Winden J., Matzke A.J., and Matzke M. RNA-directed DNA methylation mediated by DRD1 and Pol IVb: a versatile pathway for transcriptional gene silencing in plants. Biochim Biophys Acta 1769 (2007) 358-374
    • (2007) Biochim Biophys Acta , vol.1769 , pp. 358-374
    • Huettel, B.1    Kanno, T.2    Daxinger, L.3    Bucher, E.4    van der Winden, J.5    Matzke, A.J.6    Matzke, M.7
  • 7
    • 22144436236 scopus 로고    scopus 로고
    • The role of the RNAi machinery in heterochromatin formation
    • Wassenegger M. The role of the RNAi machinery in heterochromatin formation. Cell 122 (2005) 13-16
    • (2005) Cell , vol.122 , pp. 13-16
    • Wassenegger, M.1
  • 8
    • 4644242349 scopus 로고    scopus 로고
    • RNA silencing in plants
    • Baulcombe D. RNA silencing in plants. Nature 431 (2004) 356-363
    • (2004) Nature , vol.431 , pp. 356-363
    • Baulcombe, D.1
  • 9
    • 33747772001 scopus 로고    scopus 로고
    • Arabidopsis endogenous small RNAs: highways and byways
    • Vazquez F. Arabidopsis endogenous small RNAs: highways and byways. Trends Plant Sci 11 (2006) 460-468
    • (2006) Trends Plant Sci , vol.11 , pp. 460-468
    • Vazquez, F.1
  • 10
    • 33646137364 scopus 로고    scopus 로고
    • The diversity of RNA silencing pathways in plants
    • Brodersen P., and Voinnet O. The diversity of RNA silencing pathways in plants. Trends Genet 22 (2006) 268-280
    • (2006) Trends Genet , vol.22 , pp. 268-280
    • Brodersen, P.1    Voinnet, O.2
  • 12
    • 34249810892 scopus 로고    scopus 로고
    • Argonaute proteins: mediators of RNA silencing
    • Peters L., and Meister G. Argonaute proteins: mediators of RNA silencing. Mol Cell 26 (2007) 611-623
    • (2007) Mol Cell , vol.26 , pp. 611-623
    • Peters, L.1    Meister, G.2
  • 13
    • 1442360415 scopus 로고    scopus 로고
    • RNase III enzymes and the initiation of gene silencing
    • Carmell M.A., and Hannon G.J. RNase III enzymes and the initiation of gene silencing. Nat Struct Mol Biol 11 (2004) 214-218
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 214-218
    • Carmell, M.A.1    Hannon, G.J.2
  • 14
    • 10344248903 scopus 로고    scopus 로고
    • The human DiGeorge syndrome critical region gene 8 and its D. melanogaster homolog are required for miRNA biogenesis
    • Landthaler M., Yalcin A., and Tuschl T. The human DiGeorge syndrome critical region gene 8 and its D. melanogaster homolog are required for miRNA biogenesis. Curr Biol 14 (2004) 2162-2167
    • (2004) Curr Biol , vol.14 , pp. 2162-2167
    • Landthaler, M.1    Yalcin, A.2    Tuschl, T.3
  • 15
    • 1642499415 scopus 로고    scopus 로고
    • Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs
    • Bohnsack M.T., Czaplinski K., and Gorlich D. Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. Rna 10 (2004) 185-191
    • (2004) Rna , vol.10 , pp. 185-191
    • Bohnsack, M.T.1    Czaplinski, K.2    Gorlich, D.3
  • 16
    • 22744454230 scopus 로고    scopus 로고
    • Processing of pre-microRNAs by the Dicer-1-Loquacious complex in Drosophila cells
    • Saito K., Ishizuka A., Siomi H., and Siomi M.C. Processing of pre-microRNAs by the Dicer-1-Loquacious complex in Drosophila cells. PLoS Biol 3 (2005) e235
    • (2005) PLoS Biol , vol.3
    • Saito, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.C.4
  • 17
    • 33746581711 scopus 로고    scopus 로고
    • Dicer-2 and R2D2 coordinately bind siRNA to promote assembly of the siRISC complexes
    • Liu X., Jiang F., Kalidas S., Smith D., and Liu Q. Dicer-2 and R2D2 coordinately bind siRNA to promote assembly of the siRISC complexes. Rna 12 (2006) 1514-1520
    • (2006) Rna , vol.12 , pp. 1514-1520
    • Liu, X.1    Jiang, F.2    Kalidas, S.3    Smith, D.4    Liu, Q.5
  • 18
    • 34250651337 scopus 로고    scopus 로고
    • Cell biology of the arabidopsis nuclear siRNA Pathway for RNA-directed chromatin modification
    • Pikaard C.S. Cell biology of the arabidopsis nuclear siRNA Pathway for RNA-directed chromatin modification. Cold Spring Harb Symp Quant Biol 71 (2006) 473-480
    • (2006) Cold Spring Harb Symp Quant Biol , vol.71 , pp. 473-480
    • Pikaard, C.S.1
  • 19
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • Onodera Y., Haag J.R., Ream T., Nunes P.C., Pontes O., and Pikaard C.S. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120 (2005) 613-622
    • (2005) Cell , vol.120 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Nunes, P.C.4    Pontes, O.5    Pikaard, C.S.6
  • 20
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • Herr A.J., Jensen M.B., Dalmay T., and Baulcombe D.C. RNA polymerase IV directs silencing of endogenous DNA. Science 308 (2005) 118-120
    • (2005) Science , vol.308 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 21
    • 33745690105 scopus 로고    scopus 로고
    • The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
    • In this paper, the authors define the localizations of proteins in the RNA-directed DNA methylation pathway, the order in which they work, and the existence of a nucleolus-associated siRNA processing center.
    • Pontes O., Li C.F., Nunes P.C., Haag J., Ream T., Vitins A., Jacobsen S.E., and Pikaard C.S. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 126 (2006) 79-92. In this paper, the authors define the localizations of proteins in the RNA-directed DNA methylation pathway, the order in which they work, and the existence of a nucleolus-associated siRNA processing center.
    • (2006) Cell , vol.126 , pp. 79-92
    • Pontes, O.1    Li, C.F.2    Nunes, P.C.3    Haag, J.4    Ream, T.5    Vitins, A.6    Jacobsen, S.E.7    Pikaard, C.S.8
  • 22
    • 33745699398 scopus 로고    scopus 로고
    • An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana
    • This paper shows that the nucleolus-associated 24-nt siRNA processing center colocalizes with several molecular markers of Cajal bodies, providing the first evidence that Cajal bodies are involved in siRNA metabolism.
    • Li C.F., Pontes O., El-Shami M., Henderson I.R., Bernatavichute Y.V., Chan S.W., Lagrange T., Pikaard C.S., and Jacobsen S.E. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 126 (2006) 93-106. This paper shows that the nucleolus-associated 24-nt siRNA processing center colocalizes with several molecular markers of Cajal bodies, providing the first evidence that Cajal bodies are involved in siRNA metabolism.
    • (2006) Cell , vol.126 , pp. 93-106
    • Li, C.F.1    Pontes, O.2    El-Shami, M.3    Henderson, I.R.4    Bernatavichute, Y.V.5    Chan, S.W.6    Lagrange, T.7    Pikaard, C.S.8    Jacobsen, S.E.9
  • 23
    • 26944437949 scopus 로고    scopus 로고
    • MicroRNA biogenesis and function in plants
    • Chen X. MicroRNA biogenesis and function in plants. FEBS Lett 579 (2005) 5923-5931
    • (2005) FEBS Lett , vol.579 , pp. 5923-5931
    • Chen, X.1
  • 24
    • 33748314483 scopus 로고    scopus 로고
    • SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis
    • Yang L., Liu Z., Lu F., Dong A., and Huang H. SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis. Plant J 47 (2006) 841-850
    • (2006) Plant J , vol.47 , pp. 841-850
    • Yang, L.1    Liu, Z.2    Lu, F.3    Dong, A.4    Huang, H.5
  • 27
    • 34548805997 scopus 로고    scopus 로고
    • Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in arabidopsis
    • The authors show that DCL1, HYL1, and SE colocalize within a nucleolus-associated body that lacks Coilin but nonetheless contains the Cajal body markers SmD3 and SmB.
    • Fujioka Y., Utsumi M., Ohba Y., and Watanabe Y. Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in arabidopsis. Plant Cell Physiol 48 (2007) 1243-1253. The authors show that DCL1, HYL1, and SE colocalize within a nucleolus-associated body that lacks Coilin but nonetheless contains the Cajal body markers SmD3 and SmB.
    • (2007) Plant Cell Physiol , vol.48 , pp. 1243-1253
    • Fujioka, Y.1    Utsumi, M.2    Ohba, Y.3    Watanabe, Y.4
  • 28
    • 34247368510 scopus 로고    scopus 로고
    • Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants
    • These authors show that DCL1, HYL1, and SE colocalize within a nucleolus-associated body that lacks Coilin.
    • Fang Y., and Spector D.L. Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants. Curr Biol 17 (2007) 818-823. These authors show that DCL1, HYL1, and SE colocalize within a nucleolus-associated body that lacks Coilin.
    • (2007) Curr Biol , vol.17 , pp. 818-823
    • Fang, Y.1    Spector, D.L.2
  • 29
    • 31044434491 scopus 로고    scopus 로고
    • The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis
    • Kurihara Y., Takashi Y., and Watanabe Y. The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis. Rna 12 (2006) 206-212
    • (2006) Rna , vol.12 , pp. 206-212
    • Kurihara, Y.1    Takashi, Y.2    Watanabe, Y.3
  • 30
    • 34247334843 scopus 로고    scopus 로고
    • Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body
    • The authors show that HYL1 and DCL1 colocalize within a nucleolus-associated body that lacks Coilin.
    • Song L., Han M.H., Lesicka J., and Fedoroff N. Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body. Proc Natl Acad Sci U S A 104 (2007) 5437-5442. The authors show that HYL1 and DCL1 colocalize within a nucleolus-associated body that lacks Coilin.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 5437-5442
    • Song, L.1    Han, M.H.2    Lesicka, J.3    Fedoroff, N.4
  • 31
    • 0032169650 scopus 로고    scopus 로고
    • The plurifunctional nucleolus
    • Pederson T. The plurifunctional nucleolus. Nucleic Acids Res 26 (1998) 3871-3876
    • (1998) Nucleic Acids Res , vol.26 , pp. 3871-3876
    • Pederson, T.1
  • 32
    • 30444437477 scopus 로고    scopus 로고
    • Subnuclear organelles: new insights into form and function
    • Handwerger K.E., and Gall J.G. Subnuclear organelles: new insights into form and function. Trends Cell Biol 16 (2006) 19-26
    • (2006) Trends Cell Biol , vol.16 , pp. 19-26
    • Handwerger, K.E.1    Gall, J.G.2
  • 33
    • 0034193778 scopus 로고    scopus 로고
    • The nucleolus: an old factory with unexpected capabilities
    • Olson M.O., Dundr M., and Szebeni A. The nucleolus: an old factory with unexpected capabilities. Trends Cell Biol 10 (2000) 189-196
    • (2000) Trends Cell Biol , vol.10 , pp. 189-196
    • Olson, M.O.1    Dundr, M.2    Szebeni, A.3
  • 34
    • 28444456713 scopus 로고    scopus 로고
    • Cajal bodies: a long history of discovery
    • Cioce M., and Lamond A.I. Cajal bodies: a long history of discovery. Annu Rev Cell Dev Biol 21 (2005) 105-131
    • (2005) Annu Rev Cell Dev Biol , vol.21 , pp. 105-131
    • Cioce, M.1    Lamond, A.I.2
  • 36
    • 33644894371 scopus 로고    scopus 로고
    • The Cajal body: a meeting place for spliceosomal snRNPs in the nuclear maze
    • Stanek D., and Neugebauer K.M. The Cajal body: a meeting place for spliceosomal snRNPs in the nuclear maze. Chromosoma 115 (2006) 343-354
    • (2006) Chromosoma , vol.115 , pp. 343-354
    • Stanek, D.1    Neugebauer, K.M.2
  • 38
    • 0035670851 scopus 로고    scopus 로고
    • The snoRNA domain of vertebrate telomerase RNA functions to localize the RNA within the nucleus
    • Lukowiak A.A., Narayanan A., Li Z.H., Terns R.M., and Terns M.P. The snoRNA domain of vertebrate telomerase RNA functions to localize the RNA within the nucleus. Rna 7 (2001) 1833-1844
    • (2001) Rna , vol.7 , pp. 1833-1844
    • Lukowiak, A.A.1    Narayanan, A.2    Li, Z.H.3    Terns, R.M.4    Terns, M.P.5
  • 39
    • 33644915790 scopus 로고    scopus 로고
    • The Drosophila melanogaster Cajal body
    • The authors describe the occurrence in flies of Cajal bodies that lack the canonical Cajal body protein, Coilin.
    • Liu J.L., Murphy C., Buszczak M., Clatterbuck S., Goodman R., and Gall J.G. The Drosophila melanogaster Cajal body. J Cell Biol 172 (2006) 875-884. The authors describe the occurrence in flies of Cajal bodies that lack the canonical Cajal body protein, Coilin.
    • (2006) J Cell Biol , vol.172 , pp. 875-884
    • Liu, J.L.1    Murphy, C.2    Buszczak, M.3    Clatterbuck, S.4    Goodman, R.5    Gall, J.G.6
  • 41
    • 22144478256 scopus 로고    scopus 로고
    • MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
    • The authors show that mRNAs targeted for translational repression by miRNAs localize to P-bodies in a miRNA-dependent manner.
    • Liu J., Valencia-Sanchez M.A., Hannon G.J., and Parker R. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nat Cell Biol 7 (2005) 719-723. The authors show that mRNAs targeted for translational repression by miRNAs localize to P-bodies in a miRNA-dependent manner.
    • (2005) Nat Cell Biol , vol.7 , pp. 719-723
    • Liu, J.1    Valencia-Sanchez, M.A.2    Hannon, G.J.3    Parker, R.4
  • 42
    • 28544431919 scopus 로고    scopus 로고
    • A role for the P-body component GW182 in microRNA function
    • Argonaute proteins are shown to physically interact and colocalize with the P-body protein GW182 providing a molecular basis for RISC-P-body associations.
    • Liu J., Rivas F.V., Wohlschlegel J., Yates III J.R., Parker R., and Hannon G.J. A role for the P-body component GW182 in microRNA function. Nat Cell Biol 7 (2005) 1261-1266. Argonaute proteins are shown to physically interact and colocalize with the P-body protein GW182 providing a molecular basis for RISC-P-body associations.
    • (2005) Nat Cell Biol , vol.7 , pp. 1261-1266
    • Liu, J.1    Rivas, F.V.2    Wohlschlegel, J.3    Yates III, J.R.4    Parker, R.5    Hannon, G.J.6
  • 43
    • 25844442472 scopus 로고    scopus 로고
    • A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing
    • Rehwinkel J., Behm-Ansmant I., Gatfield D., and Izaurralde E. A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing. Rna 11 (2005) 1640-1647
    • (2005) Rna , vol.11 , pp. 1640-1647
    • Rehwinkel, J.1    Behm-Ansmant, I.2    Gatfield, D.3    Izaurralde, E.4
  • 45
    • 33746055678 scopus 로고    scopus 로고
    • mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes
    • Behm-Ansmant I., Rehwinkel J., Doerks T., Stark A., Bork P., and Izaurralde E. mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes. Genes Dev 20 (2006) 1885-1898
    • (2006) Genes Dev , vol.20 , pp. 1885-1898
    • Behm-Ansmant, I.1    Rehwinkel, J.2    Doerks, T.3    Stark, A.4    Bork, P.5    Izaurralde, E.6
  • 46
    • 10944256057 scopus 로고    scopus 로고
    • GW182 is critical for the stability of GW bodies expressed during the cell cycle and cell proliferation
    • Yang Z., Jakymiw A., Wood M.R., Eystathioy T., Rubin R.L., Fritzler M.J., and Chan E.K. GW182 is critical for the stability of GW bodies expressed during the cell cycle and cell proliferation. J Cell Sci 117 (2004) 5567-5578
    • (2004) J Cell Sci , vol.117 , pp. 5567-5578
    • Yang, Z.1    Jakymiw, A.2    Wood, M.R.3    Eystathioy, T.4    Rubin, R.L.5    Fritzler, M.J.6    Chan, E.K.7
  • 47
    • 19344374029 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species
    • Conti E., and Izaurralde E. Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species. Curr Opin Cell Biol 17 (2005) 316-325
    • (2005) Curr Opin Cell Biol , vol.17 , pp. 316-325
    • Conti, E.1    Izaurralde, E.2
  • 48
    • 19344366251 scopus 로고    scopus 로고
    • Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells
    • Lejeune F., and Maquat L.E. Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells. Curr Opin Cell Biol 17 (2005) 309-315
    • (2005) Curr Opin Cell Biol , vol.17 , pp. 309-315
    • Lejeune, F.1    Maquat, L.E.2
  • 49
    • 33745770062 scopus 로고    scopus 로고
    • Early nonsense: mRNA decay solves a translational problem
    • Amrani N., Sachs M.S., and Jacobson A. Early nonsense: mRNA decay solves a translational problem. Nat Rev Mol Cell Biol 7 (2006) 415-425
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 415-425
    • Amrani, N.1    Sachs, M.S.2    Jacobson, A.3
  • 50
    • 19944400417 scopus 로고    scopus 로고
    • Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions
    • The authors show that proteins of the exon-joining complex and nonsense-mediated decay pathway localize to the nucleolus in Arabidopsis.
    • Pendle A.F., Clark G.P., Boon R., Lewandowska D., Lam Y.W., Andersen J., Mann M., Lamond A.I., Brown J.W., and Shaw P.J. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Mol Biol Cell 16 (2005) 260-269. The authors show that proteins of the exon-joining complex and nonsense-mediated decay pathway localize to the nucleolus in Arabidopsis.
    • (2005) Mol Biol Cell , vol.16 , pp. 260-269
    • Pendle, A.F.1    Clark, G.P.2    Boon, R.3    Lewandowska, D.4    Lam, Y.W.5    Andersen, J.6    Mann, M.7    Lamond, A.I.8    Brown, J.W.9    Shaw, P.J.10
  • 52
    • 0035316574 scopus 로고    scopus 로고
    • Chromosome territories, nuclear architecture and gene regulation in mammalian cells
    • Cremer T., and Cremer C. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet 2 (2001) 292-301
    • (2001) Nat Rev Genet , vol.2 , pp. 292-301
    • Cremer, T.1    Cremer, C.2


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