메뉴 건너뛰기




Volumn 8, Issue 4, 2009, Pages 297-309

Close encounters of the 3C kind: Long-range chromatin interactions and transcriptional regulation

Author keywords

globin; Chromosome conformation capture; Long range activation; Transcription

Indexed keywords

BETA GLOBIN; CCCTC BINDING FACTOR; DEOXYRIBONUCLEASE I; ERYTHROID KRUPPEL LIKE FACTOR; KRUPPEL LIKE FACTOR; MULTIPROTEIN COMPLEX; NUCLEAR FACTOR; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GATA 1; TRANSCRIPTION FACTOR NF E2; UNCLASSIFIED DRUG;

EID: 70349542588     PISSN: 14739550     EISSN: 14774062     Source Type: Journal    
DOI: 10.1093/bfgp/elp016     Document Type: Review
Times cited : (25)

References (130)
  • 1
    • 60349092985 scopus 로고    scopus 로고
    • Eukaryotic transcription initiation
    • Krishnamurthy S, Hampsey M. Eukaryotic transcription initiation. Curr Biol 2009;19:R153-6.
    • (2009) Curr Biol , vol.19
    • Krishnamurthy, S.1    Hampsey, M.2
  • 2
    • 0037083376 scopus 로고    scopus 로고
    • Capturing chromosome conformation
    • Dekker J, Rippe K, Dekker M, et al. Capturing chromosome conformation. Science 2002;295:1306-11.
    • (2002) Science , vol.295 , pp. 1306-1311
    • Dekker, J.1    Rippe, K.2    Dekker, M.3
  • 3
    • 0036898580 scopus 로고    scopus 로고
    • Long-range chromatin regulatory interactions in vivo
    • Carter D, Chakalova L, Osborne CS, et al. Long-range chromatin regulatory interactions in vivo. Nat Genet 2002; 32:623-6.
    • (2002) Nat Genet , vol.32 , pp. 623-626
    • Carter, D.1    Chakalova, L.2    Osborne, C.S.3
  • 4
    • 0036923833 scopus 로고    scopus 로고
    • Looping and interaction between hypersensitive sites in the active beta-globin locus
    • Tolhuis B, Palstra RJ, Splinter E, et al. Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol Cell 2002;10:1453-65.
    • (2002) Mol Cell , vol.10 , pp. 1453-1465
    • Tolhuis, B.1    Palstra, R.J.2    Splinter, E.3
  • 5
    • 58149333734 scopus 로고    scopus 로고
    • Long-range chromosomal interactions and gene regulation
    • Miele A, Dekker J. Long-range chromosomal interactions and gene regulation. Mol Biosyst 2008;4:1046-57.
    • (2008) Mol Biosyst , vol.4 , pp. 1046-1057
    • Miele, A.1    Dekker, J.2
  • 6
    • 53249124651 scopus 로고    scopus 로고
    • FISH-eyed and genome-wide views on the spatial organisation of gene expression
    • Simonis M, de Laat W. FISH-eyed and genome-wide views on the spatial organisation of gene expression. Biochim Biophys Acta 2008;1783 2052-60.
    • (2008) Biochim Biophys Acta , vol.1783 , pp. 2052-2060
    • Simonis, M.1    de Laat, W.2
  • 7
    • 34250192183 scopus 로고    scopus 로고
    • Long-range DNA contacts: Romance in the nucleus?
    • de Laat W. Long-range DNA contacts: Romance in the nucleus? Curr Opin Cell Biol 2007;19:317-20.
    • (2007) Curr Opin Cell Biol , vol.19 , pp. 317-320
    • de Laat, W.1
  • 8
    • 35548953639 scopus 로고    scopus 로고
    • Inter-chromosomal gene regulation in the mammalian cell nucleus
    • de Laat W, Grosveld F. Inter-chromosomal gene regulation in the mammalian cell nucleus. Curr Opin Genet Dev 2007; 17:456-64.
    • (2007) Curr Opin Genet Dev , vol.17 , pp. 456-464
    • de Laat, W.1    Grosveld, F.2
  • 9
    • 58149165358 scopus 로고    scopus 로고
    • Hemoglobin research and the origins of molecular medicine
    • Schechter AN. Hemoglobin research and the origins of molecular medicine. Blood 2008;112:3927-38.
    • (2008) Blood , vol.112 , pp. 3927-3938
    • Schechter, A.N.1
  • 10
    • 0021014396 scopus 로고
    • Beta-globin gene inactivation by DNA translocation in gamma beta-thalassaemia
    • Kioussis D, Vanin E, deLange T, et al. Beta-globin gene inactivation by DNA translocation in gamma beta-thalassaemia. Nature 1983;306:662-6.
    • (1983) Nature , vol.306 , pp. 662-666
    • Kioussis, D.1    Vanin, E.2    deLange, T.3
  • 11
    • 0023663887 scopus 로고
    • Position-independent, high-level expression of the human beta-globin gene in transgenic mice
    • Grosveld F, van Assendelft GB, Greaves DR, et al. Position-independent, high-level expression of the human beta-globin gene in transgenic mice. Cell 1987;51: 975-85.
    • (1987) Cell , vol.51 , pp. 975-985
    • Grosveld, F.1    van Assendelft, G.B.2    Greaves, D.R.3
  • 12
    • 0344272073 scopus 로고
    • The "beta-like-globin" gene domain in human erythroid cells
    • Tuan D, Solomon W, Li Q, et al. The "beta-like-globin" gene domain in human erythroid cells. Proc Natl Acad Sci USA 1985;82 6384-8.
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 6384-6388
    • Tuan, D.1    Solomon, W.2    Li, Q.3
  • 13
    • 0033609020 scopus 로고    scopus 로고
    • Conservation of sequence and structure flanking the mouse and human beta-globin loci: The beta-globin genes are embedded within an array of odorant receptor genes
    • Bulger M, van Doorninck JH, Saitoh N, et al. Conservation of sequence and structure flanking the mouse and human beta-globin loci: the beta-globin genes are embedded within an array of odorant receptor genes. Proc Natl Acad Sci USA 1999;96:5129-34.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 5129-5134
    • Bulger, M.1    van Doorninck, J.H.2    Saitoh, N.3
  • 14
    • 0031306463 scopus 로고    scopus 로고
    • The effect of distance on long-range chromatin interactions
    • Dillon N, Trimborn T, Strouboulis J, et al. The effect of distance on long-range chromatin interactions. Mol Cell 1997;1:131-9.
    • (1997) Mol Cell , vol.1 , pp. 131-139
    • Dillon, N.1    Trimborn, T.2    Strouboulis, J.3
  • 15
    • 0029051646 scopus 로고
    • Transcription complex stability and chromatin dynamics in vivo
    • Wijgerde M, Grosveld F, Fraser P. Transcription complex stability and chromatin dynamics in vivo. Nature 1995;377: 209-13.
    • (1995) Nature , vol.377 , pp. 209-213
    • Wijgerde, M.1    Grosveld, F.2    Fraser, P.3
  • 16
    • 0032531694 scopus 로고    scopus 로고
    • Chromatin interaction mechanism of transcriptional control in vivo
    • Gribnau J, de Boer E, Trimborn T, et al. Chromatin interaction mechanism of transcriptional control in vivo. EMBO J 1998;17 6020-7.
    • (1998) EMBO J , vol.17 , pp. 6020-6027
    • Gribnau, J.1    de Boer, E.2    Trimborn, T.3
  • 17
    • 0032943583 scopus 로고    scopus 로고
    • Mechanisms of developmental control of transcription in the murine alpha-and beta-globin loci
    • Trimborn T, Gribnau J, Grosveld F, et al. Mechanisms of developmental control of transcription in the murine alpha-and beta-globin loci. Genes Dev 1999;13:112-4.
    • (1999) Genes Dev , vol.13 , pp. 112-114
    • Trimborn, T.1    Gribnau, J.2    Grosveld, F.3
  • 18
    • 0033215443 scopus 로고    scopus 로고
    • Looping versus linking: Toward a model for long-distance gene activation
    • Bulger M, Groudine M. Looping versus linking: Toward a model for long-distance gene activation. Genes Dev 1999;13: 2465-77.
    • (1999) Genes Dev , vol.13 , pp. 2465-2477
    • Bulger, M.1    Groudine, M.2
  • 19
    • 0141730403 scopus 로고    scopus 로고
    • The beta-globin nuclear compartment in development and erythroid differentiation
    • Palstra RJ, Tolhuis B, Splinter E, et al. The beta-globin nuclear compartment in development and erythroid differentiation. Nat Genet 2003;35:190-4.
    • (2003) Nat Genet , vol.35 , pp. 190-194
    • Palstra, R.J.1    Tolhuis, B.2    Splinter, E.3
  • 20
    • 31344477982 scopus 로고    scopus 로고
    • The three 'C' s of chromosome conformation capture: Controls, controls, controls
    • Dekker J. The three 'C' s of chromosome conformation capture: Controls, controls, controls. Nat Methods 2006;3: 17-21.
    • (2006) Nat Methods , vol.3 , pp. 17-21
    • Dekker, J.1
  • 21
    • 35748956435 scopus 로고    scopus 로고
    • An evaluation of 3C-based methods to capture DNA interactions
    • Simonis M, Kooren J, de Laat W. An evaluation of 3C-based methods to capture DNA interactions. Nat Methods 2007;4:895-901.
    • (2007) Nat Methods , vol.4 , pp. 895-901
    • Simonis, M.1    Kooren, J.2    de Laat, W.3
  • 22
  • 23
    • 3543018516 scopus 로고    scopus 로고
    • Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops
    • Murrell A, Heeson S, Reik W. Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops. Nat Genet 2004;36:889-93.
    • (2004) Nat Genet , vol.36 , pp. 889-893
    • Murrell, A.1    Heeson, S.2    Reik, W.3
  • 24
    • 5444237577 scopus 로고    scopus 로고
    • Long-range intrachromosomal interactions in the T helper type 2 cytokine locus
    • Spilianakis CG, Flavell RA. Long-range intrachromosomal interactions in the T helper type 2 cytokine locus. Nat Immunol 2004;5 1017-27.
    • (2004) Nat Immunol , vol.5 , pp. 1017-1027
    • Spilianakis, C.G.1    Flavell, R.A.2
  • 25
    • 12344250807 scopus 로고    scopus 로고
    • Hypersensitive site 7 of the TH2 locus control region is essential for expressing TH2 cytokine genes and for long-range intrachromosomal interactions
    • Lee GR, Spilianakis CG, Flavell RA. Hypersensitive site 7 of the TH2 locus control region is essential for expressing TH2 cytokine genes and for long-range intrachromosomal interactions. Nat Immunol 2005; 6:42-8.
    • (2005) Nat Immunol , vol.6 , pp. 42-48
    • Lee, G.R.1    Spilianakis, C.G.2    Flavell, R.A.3
  • 26
    • 57249098389 scopus 로고    scopus 로고
    • Study of spatial organization of chicken alpha-globin gene domain by 3C technique
    • Gavrilov AA, Razin SV. Study of spatial organization of chicken alpha-globin gene domain by 3C technique. Biochemistry 2008;73 1192-9.
    • (2008) Biochemistry , vol.73 , pp. 1192-1199
    • Gavrilov, A.A.1    Razin, S.V.2
  • 27
    • 33745436025 scopus 로고    scopus 로고
    • Active chromatin hub of the mouse alpha-globin locus forms in a transcription factory of clustered housekeeping genes
    • Zhou GL, Xin L, Song W, et al. Active chromatin hub of the mouse alpha-globin locus forms in a transcription factory of clustered housekeeping genes. Mol Cell Biol 2006;26:5096-105.
    • (2006) Mol Cell Biol , vol.26 , pp. 5096-5105
    • Zhou, G.L.1    Xin, L.2    Song, W.3
  • 28
    • 34247272882 scopus 로고    scopus 로고
    • Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression
    • Vernimmen D, De Gobbi M, Sloane-Stanley JA, et al. Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression. EMBO J 2007;26:2041-51.
    • (2007) EMBO J , vol.26 , pp. 2041-2051
    • Vernimmen, D.1    De Gobbi, M.2    Sloane-Stanley, J.A.3
  • 29
    • 40449104358 scopus 로고    scopus 로고
    • Transient cyclical methylation of promoter DNA
    • Kangaspeska S, Stride B, Metivier R, et al. Transient cyclical methylation of promoter DNA. Nature 2008;452:112-5.
    • (2008) Nature , vol.452 , pp. 112-115
    • Kangaspeska, S.1    Stride, B.2    Metivier, R.3
  • 30
    • 40449123137 scopus 로고    scopus 로고
    • Cyclical DNA methylation of a transcriptionally active promoter
    • Metivier R, Gallais R, Tiffoche C, et al. Cyclical DNA methylation of a transcriptionally active promoter. Nature 2008;452 45-50.
    • (2008) Nature , vol.452 , pp. 45-50
    • Metivier, R.1    Gallais, R.2    Tiffoche, C.3
  • 31
    • 58049208232 scopus 로고    scopus 로고
    • Enhancing nuclear receptor-induced transcription requires nuclear motor and LSD1-dependent gene networking in interchromatin granules
    • Hu Q, Kwon YS, Nunez E, et al. Enhancing nuclear receptor-induced transcription requires nuclear motor and LSD1-dependent gene networking in interchromatin granules. Proc Natl Acad Sci USA 2008;105 19199-204.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 19199-19204
    • Hu, Q.1    Kwon, Y.S.2    Nunez, E.3
  • 32
    • 57749083496 scopus 로고    scopus 로고
    • Regulation of estrogen receptor-mediated long range transcription via evolutionarily conserved distal response elements
    • Pan YF, Wansa KD, Liu MH, et al. Regulation of estrogen receptor-mediated long range transcription via evolutionarily conserved distal response elements. J Biol Chem 2008; 283:32977-88.
    • (2008) J Biol Chem , vol.283 , pp. 32977-32988
    • Pan, Y.F.1    Wansa, K.D.2    Liu, M.H.3
  • 33
    • 38149045693 scopus 로고    scopus 로고
    • DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression
    • Perillo B, Ombra MN, Bertoni A, et al. DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression. Science 2008;319:202-6.
    • (2008) Science , vol.319 , pp. 202-206
    • Perillo, B.1    Ombra, M.N.2    Bertoni, A.3
  • 34
    • 65249150266 scopus 로고    scopus 로고
    • Glucocorticoid receptor activation of the ciz1-lcn2 locus by long range interactions
    • Hakim O, John S, Ling JQ, et al. Glucocorticoid receptor activation of the ciz1-lcn2 locus by long range interactions. J Biol Chem 2009;284:6048-52.
    • (2009) J Biol Chem , vol.284 , pp. 6048-6052
    • Hakim, O.1    John, S.2    Ling, J.Q.3
  • 35
    • 65549121213 scopus 로고    scopus 로고
    • Cyclical chromatin looping and transcription factor association on the regulatory regions of the p21 (CDKN1A) gene in response to 1{alpha},25-Dihydroxyvitamin D3
    • Saramaki A, Diermeier S, Kellner R, et al. Cyclical chromatin looping and transcription factor association on the regulatory regions of the p21 (CDKN1A) gene in response to 1{alpha},25-Dihydroxyvitamin D3. J Biol Chem 2009;284: 8073-82.
    • (2009) J Biol Chem , vol.284 , pp. 8073-8082
    • Saramaki, A.1    Diermeier, S.2    Kellner, R.3
  • 36
    • 56249103761 scopus 로고    scopus 로고
    • Functional long-range interactions of the IgH 3′ enhancers with the bcl-2 promoter region in t(14;18) lymphoma cells
    • Duan H, Xiang H, Ma L, et al. Functional long-range interactions of the IgH 3′ enhancers with the bcl-2 promoter region in t(14;18) lymphoma cells. Oncogene 2008;27: 6720-8.
    • (2008) Oncogene , vol.27 , pp. 6720-6728
    • Duan, H.1    Xiang, H.2    Ma, L.3
  • 37
    • 41949142533 scopus 로고    scopus 로고
    • Noordermeer D, Branco MR, Splinter E, et al. Transcription and chromatin organization of a housekeeping gene cluster containing an integrated beta-globin locus control region. PLoS Genet 2008;4 e1000016.
    • Noordermeer D, Branco MR, Splinter E, et al. Transcription and chromatin organization of a housekeeping gene cluster containing an integrated beta-globin locus control region. PLoS Genet 2008;4 e1000016.
  • 38
    • 0037154982 scopus 로고    scopus 로고
    • A unified theory of gene expression
    • Orphanides G, Reinberg D. A unified theory of gene expression. Cell 2002;108:439-451.
    • (2002) Cell , vol.108 , pp. 439-451
    • Orphanides, G.1    Reinberg, D.2
  • 39
    • 0037397261 scopus 로고    scopus 로고
    • Detours and shortcuts to transcription reinitiation
    • Dieci G, Sentenac A. Detours and shortcuts to transcription reinitiation. Trends Biochem Sci 2003;28:202-9.
    • (2003) Trends Biochem Sci , vol.28 , pp. 202-209
    • Dieci, G.1    Sentenac, A.2
  • 40
    • 29144472375 scopus 로고    scopus 로고
    • A role for the CPF 3′-end processing machinery in RNAP II-dependent gene looping
    • Ansari A, Hampsey M. A role for the CPF 3′-end processing machinery in RNAP II-dependent gene looping. Genes Dev 2005;19:2969-78.
    • (2005) Genes Dev , vol.19 , pp. 2969-2978
    • Ansari, A.1    Hampsey, M.2
  • 41
    • 34548219406 scopus 로고    scopus 로고
    • A transcription-independent role for TFIIB in gene looping
    • Singh BN, Hampsey M. A transcription-independent role for TFIIB in gene looping. Mol Cell 2007;27:808-16.
    • (2007) Mol Cell , vol.27 , pp. 808-816
    • Singh, B.N.1    Hampsey, M.2
  • 42
    • 29244468548 scopus 로고    scopus 로고
    • Termination factor-mediated DNA loop between termination and initiation sites drives mitochondrial rRNA synthesis
    • Martin M, Cho J, Cesare AJ, et al. Termination factor-mediated DNA loop between termination and initiation sites drives mitochondrial rRNA synthesis. Cell 2005;123: 1227-40.
    • (2005) Cell , vol.123 , pp. 1227-1240
    • Martin, M.1    Cho, J.2    Cesare, A.J.3
  • 43
    • 38149020517 scopus 로고    scopus 로고
    • Transcription-dependent gene looping of the HIV-1 provirus is dictated by recognition of pre-mRNA processing signals
    • Perkins KJ, Lusic M, Mitar I, et al. Transcription-dependent gene looping of the HIV-1 provirus is dictated by recognition of pre-mRNA processing signals. Mol Cell 2008;29: 56-68.
    • (2008) Mol Cell , vol.29 , pp. 56-68
    • Perkins, K.J.1    Lusic, M.2    Mitar, I.3
  • 44
    • 34547436788 scopus 로고    scopus 로고
    • Cell-type-specific expression of the human CD68 gene is associated with changes in Pol II phosphorylation and short-range intrachromosomal gene looping
    • O'Reilly D, Greaves DR. Cell-type-specific expression of the human CD68 gene is associated with changes in Pol II phosphorylation and short-range intrachromosomal gene looping. Genomics 2007;90 407-15.
    • (2007) Genomics , vol.90 , pp. 407-415
    • O'Reilly, D.1    Greaves, D.R.2
  • 45
    • 42449140588 scopus 로고    scopus 로고
    • Dynamic interactions between the promoter and terminator regions of the mammalian BRCA1 gene
    • Tan-Wong SM, French JD, Proudfoot NJ, et al. Dynamic interactions between the promoter and terminator regions of the mammalian BRCA1 gene. Proc Natl Acad Sci USA 2008;105:5160-5.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 5160-5165
    • Tan-Wong, S.M.1    French, J.D.2    Proudfoot, N.J.3
  • 46
    • 11244328520 scopus 로고    scopus 로고
    • Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome
    • Horike S, Cai S, Miyano M, et al. Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome. Nat Genet 2005;37:31-40.
    • (2005) Nat Genet , vol.37 , pp. 31-40
    • Horike, S.1    Cai, S.2    Miyano, M.3
  • 47
    • 38649128173 scopus 로고    scopus 로고
    • Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus
    • Jing H, Vakoc CR, Ying L, et al. Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus. Mol Cell 2008;29: 232-42.
    • (2008) Mol Cell , vol.29 , pp. 232-242
    • Jing, H.1    Vakoc, C.R.2    Ying, L.3
  • 48
    • 34848825691 scopus 로고    scopus 로고
    • Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex
    • Lanzuolo C, Roure V, Dekker J, et al. Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex. Nat Cell Biol 2007;9:1167-74.
    • (2007) Nat Cell Biol , vol.9 , pp. 1167-1174
    • Lanzuolo, C.1    Roure, V.2    Dekker, J.3
  • 49
    • 84883798471 scopus 로고    scopus 로고
    • PcG proteins, DNA methylation, and gene repression by chromatin looping
    • Tiwari VK, McGarvey KM, Licchesi JD, et al. PcG proteins, DNA methylation, and gene repression by chromatin looping. PLoS Biol 2008;6:2911-27.
    • (2008) PLoS Biol , vol.6 , pp. 2911-2927
    • Tiwari, V.K.1    McGarvey, K.M.2    Licchesi, J.D.3
  • 50
    • 33748259774 scopus 로고    scopus 로고
    • CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus
    • Splinter E, Heath H, Kooren J, et al. CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus. Genes Dev 2006;20: 2349-54.
    • (2006) Genes Dev , vol.20 , pp. 2349-2354
    • Splinter, E.1    Heath, H.2    Kooren, J.3
  • 51
    • 0043239344 scopus 로고    scopus 로고
    • HS5 of the human beta-globin locus control region: A developmental stage-specific border in erythroid cells
    • Wai AW, Gillemans N, Raguz-Bolognesi S, et al. HS5 of the human beta-globin locus control region: A developmental stage-specific border in erythroid cells. EMBO J 2003;22: 4489-500.
    • (2003) EMBO J , vol.22 , pp. 4489-4500
    • Wai, A.W.1    Gillemans, N.2    Raguz-Bolognesi, S.3
  • 52
    • 33747174553 scopus 로고    scopus 로고
    • Flanking HS-62.5 and 3′HS1, and regions upstream of the LCR are not required for {beta}-globin transcription
    • Bender MA, Byron R, Ragoczy T, et al. Flanking HS-62.5 and 3′HS1, and regions upstream of the LCR are not required for {beta}-globin transcription. Blood 2006;108: 1395-401.
    • (2006) Blood , vol.108 , pp. 1395-1401
    • Bender, M.A.1    Byron, R.2    Ragoczy, T.3
  • 53
    • 47749114963 scopus 로고    scopus 로고
    • 5′HS5 of the human beta-globin locus control region is dispensable for the formation of the beta-globin active chromatin hub
    • Chan PK, Wai A, Philipsen S, et al. 5′HS5 of the human beta-globin locus control region is dispensable for the formation of the beta-globin active chromatin hub. PLoS ONE 2008;3:e2134.
    • (2008) PLoS ONE , vol.3
    • Chan, P.K.1    Wai, A.2    Philipsen, S.3
  • 54
    • 5444243359 scopus 로고    scopus 로고
    • Active genes dynamically colocalize to shared sites of ongoing transcription
    • Osborne CS, Chakalova L, Brown KE, et al. Active genes dynamically colocalize to shared sites of ongoing transcription. Nat Genet 2004;36:1065-71.
    • (2004) Nat Genet , vol.36 , pp. 1065-1071
    • Osborne, C.S.1    Chakalova, L.2    Brown, K.E.3
  • 55
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
    • Simonis M, Klous P, Splinter E, et al. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat Genet 2006;38:1348-54.
    • (2006) Nat Genet , vol.38 , pp. 1348-1354
    • Simonis, M.1    Klous, P.2    Splinter, E.3
  • 56
    • 39049103917 scopus 로고    scopus 로고
    • Chromatin structure and the regulation of gene expression: The lessons of PEV in Drosophila
    • Girton JR, Johansen KM. Chromatin structure and the regulation of gene expression: The lessons of PEV in Drosophila. Adv Genet 2008;61 1-43.
    • (2008) Adv Genet , vol.61 , pp. 1-43
    • Girton, J.R.1    Johansen, K.M.2
  • 57
    • 33748805480 scopus 로고    scopus 로고
    • Spreading of silent chromatin: Inaction at a distance
    • Talbert PB, Henikoff S. Spreading of silent chromatin: Inaction at a distance. Nat Rev Genet 2006;7:793-803.
    • (2006) Nat Rev Genet , vol.7 , pp. 793-803
    • Talbert, P.B.1    Henikoff, S.2
  • 58
    • 4544330542 scopus 로고    scopus 로고
    • An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene
    • Zhao H, Dean A. An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene. Nucleic Acids Res 2004;32: 4903-19.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4903-4919
    • Zhao, H.1    Dean, A.2
  • 59
    • 33750071087 scopus 로고    scopus 로고
    • Enhancer blocking by chicken beta -globin 5′ HS4: Role of enhancer strength and insulator nucleosome depletion
    • Zhao H, Kim A, Song SH, et al. Enhancer blocking by chicken beta -globin 5′ HS4: Role of enhancer strength and insulator nucleosome depletion. J Biol Chem 2006;281:30573-80.
    • (2006) J Biol Chem , vol.281 , pp. 30573-30580
    • Zhao, H.1    Kim, A.2    Song, S.H.3
  • 60
    • 34548708489 scopus 로고    scopus 로고
    • A facilitated tracking and transcription mechanism of long-range enhancer function
    • Zhu X, Ling J, Zhang L, et al. A facilitated tracking and transcription mechanism of long-range enhancer function. Nucleic Acids Res 2007;35:5532-44.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5532-5544
    • Zhu, X.1    Ling, J.2    Zhang, L.3
  • 61
    • 0025891698 scopus 로고
    • DNA looping between sites for transcriptional activation: Self-association of DNA-bound Sp1
    • Su W, Jackson S, Tjian R, et al. DNA looping between sites for transcriptional activation: Self-association of DNA-bound Sp1. Genes Dev 1991;5:820-6.
    • (1991) Genes Dev , vol.5 , pp. 820-826
    • Su, W.1    Jackson, S.2    Tjian, R.3
  • 62
    • 6744219613 scopus 로고    scopus 로고
    • Long range interaction of cis-DNA elements mediated by architectural transcription factor Bach1
    • Yoshida C, Tokumasu F, Hohmura KI, et al. Long range interaction of cis-DNA elements mediated by architectural transcription factor Bach1. Genes Cells 1999;4: 643-55.
    • (1999) Genes Cells , vol.4 , pp. 643-655
    • Yoshida, C.1    Tokumasu, F.2    Hohmura, K.I.3
  • 63
    • 0037007221 scopus 로고    scopus 로고
    • GAGA can mediate enhancer function in trans by linking two separate DNA molecules
    • Mahmoudi T, Katsani KR, Verrijzer CP. GAGA can mediate enhancer function in trans by linking two separate DNA molecules. EMBO J 2002;21 1775-81.
    • (2002) EMBO J , vol.21 , pp. 1775-1781
    • Mahmoudi, T.1    Katsani, K.R.2    Verrijzer, C.P.3
  • 64
    • 0036792465 scopus 로고    scopus 로고
    • Chromatin structure and control of beta-like globin gene switching
    • Harju S, McQueen KJ, Peterson KR. Chromatin structure and control of beta-like globin gene switching. Exp Biol Med 2002;227 683-700.
    • (2002) Exp Biol Med , vol.227 , pp. 683-700
    • Harju, S.1    McQueen, K.J.2    Peterson, K.R.3
  • 65
    • 0037370573 scopus 로고    scopus 로고
    • Hemoglobin switching: New insights
    • Peterson KR. Hemoglobin switching: New insights. Curr Opin Hematol 2003;10:123-9.
    • (2003) Curr Opin Hematol , vol.10 , pp. 123-129
    • Peterson, K.R.1
  • 66
    • 0029010790 scopus 로고
    • Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene
    • Nuez B, Michalovich D, Bygrave A, et al. Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene. Nature 1995;375:316-8.
    • (1995) Nature , vol.375 , pp. 316-318
    • Nuez, B.1    Michalovich, D.2    Bygrave, A.3
  • 67
    • 0028990264 scopus 로고
    • Lethal beta-thalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF
    • Perkins AC, Sharpe AH, Orkin SH. Lethal beta-thalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF. Nature 1995;375:318-22.
    • (1995) Nature , vol.375 , pp. 318-322
    • Perkins, A.C.1    Sharpe, A.H.2    Orkin, S.H.3
  • 68
    • 5444255213 scopus 로고    scopus 로고
    • The active spatial organization of the beta-globin locus requires the transcription factor EKLF
    • Drissen R, Palstra RJ, Gillemans N, et al. The active spatial organization of the beta-globin locus requires the transcription factor EKLF. Genes Dev 2004;18:2485-90.
    • (2004) Genes Dev , vol.18 , pp. 2485-2490
    • Drissen, R.1    Palstra, R.J.2    Gillemans, N.3
  • 69
    • 28044437502 scopus 로고    scopus 로고
    • Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region
    • Im H, Grass JA, Johnson KD, et al. Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region. Proc Natl Acad Sci USA 2005;102 17065-70.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 17065-17070
    • Im, H.1    Grass, J.A.2    Johnson, K.D.3
  • 70
    • 13244272059 scopus 로고    scopus 로고
    • Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1
    • Vakoc CR, Letting DL, Gheldof N, et al. Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1. Mol Cell 2005;17:453-62.
    • (2005) Mol Cell , vol.17 , pp. 453-462
    • Vakoc, C.R.1    Letting, D.L.2    Gheldof, N.3
  • 71
    • 22744437648 scopus 로고    scopus 로고
    • GATA-1 forms distinct activating and repressive complexes in erythroid cells
    • Rodriguez P, Bonte E, Krijgsveld J, et al. GATA-1 forms distinct activating and repressive complexes in erythroid cells. EMBO J 2005;24:2354-66.
    • (2005) EMBO J , vol.24 , pp. 2354-2366
    • Rodriguez, P.1    Bonte, E.2    Krijgsveld, J.3
  • 72
    • 0028100843 scopus 로고
    • Retroviral integration within the Fli-2 locus results in inactivation of the erythroid transcription factor NF-E2 in Friend erythroleukemias: Evidence that NF-E2 is essential for globin expression
    • Lu SJ, Rowan S, Bani MR, et al. Retroviral integration within the Fli-2 locus results in inactivation of the erythroid transcription factor NF-E2 in Friend erythroleukemias: Evidence that NF-E2 is essential for globin expression. Proc Natl Acad Sci USA 1994;91 8398-402.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 8398-8402
    • Lu, S.J.1    Rowan, S.2    Bani, M.R.3
  • 73
    • 0029050860 scopus 로고
    • Erythropoiesis and globin gene expression in mice lacking the transcription factor NF-E2
    • Shivdasani RA, Orkin SH. Erythropoiesis and globin gene expression in mice lacking the transcription factor NF-E2. Proc Natl Acad Sci USA 1995;92:8690-4.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 8690-8694
    • Shivdasani, R.A.1    Orkin, S.H.2
  • 74
    • 34447536151 scopus 로고    scopus 로고
    • Beta-globin active chromatin Hub formation in differentiating erythroid cells and in p45 NF-E2 knock-out mice
    • Kooren J, Palstra RJ, Klous P, et al. Beta-globin active chromatin Hub formation in differentiating erythroid cells and in p45 NF-E2 knock-out mice. J Biol Chem 2007;282: 16544-52.
    • (2007) J Biol Chem , vol.282 , pp. 16544-16552
    • Kooren, J.1    Palstra, R.J.2    Klous, P.3
  • 75
    • 0032080193 scopus 로고    scopus 로고
    • Erythroid maturation and globin gene expression in mice with combined deficiency of NF-E2 and nrf-2
    • Martin F, van Deursen JM, Shivdasani RA, et al. Erythroid maturation and globin gene expression in mice with combined deficiency of NF-E2 and nrf-2. Blood 1998;91: 3459-66.
    • (1998) Blood , vol.91 , pp. 3459-3466
    • Martin, F.1    van Deursen, J.M.2    Shivdasani, R.A.3
  • 76
    • 0031914328 scopus 로고    scopus 로고
    • Ablation of Nrf2 function does not increase the erythroid or megakaryocytic cell lineage dysfunction caused by p45 NF-E2 gene disruption
    • Kuroha T, Takahashi S, Komeno T, et al. Ablation of Nrf2 function does not increase the erythroid or megakaryocytic cell lineage dysfunction caused by p45 NF-E2 gene disruption. J Biochem 1998; 123:376-9.
    • (1998) J Biochem , vol.123 , pp. 376-379
    • Kuroha, T.1    Takahashi, S.2    Komeno, T.3
  • 77
    • 1842453034 scopus 로고    scopus 로고
    • Complexity of CNC transcription factors as revealed by gene targeting of the Nrf3 locus
    • Derjuga A, Gourley TS, Holm TM, et al. Complexity of CNC transcription factors as revealed by gene targeting of the Nrf3 locus. Mol Cell Biol 2004;24:3286-94.
    • (2004) Mol Cell Biol , vol.24 , pp. 3286-3294
    • Derjuga, A.1    Gourley, T.S.2    Holm, T.M.3
  • 78
    • 43049106460 scopus 로고    scopus 로고
    • MafK/NF-E2 p18 is required for beta-globin genes activation by mediating the proximity of LCR and active beta-globin genes in MEL cell line
    • Du MJ, Lv X, Hao DL, et al. MafK/NF-E2 p18 is required for beta-globin genes activation by mediating the proximity of LCR and active beta-globin genes in MEL cell line. Int J Biochem Cell Biol 2008;40:1481-93.
    • (2008) Int J Biochem Cell Biol , vol.40 , pp. 1481-1493
    • Du, M.J.1    Lv, X.2    Hao, D.L.3
  • 79
    • 0037154228 scopus 로고    scopus 로고
    • Multiple hematopoietic defects and delayed globin switching in Ikaros null mice
    • Lopez RA, Schoetz S, DeAngelis K, et al. Multiple hematopoietic defects and delayed globin switching in Ikaros null mice. Proc Natl Acad Sci USA 2002;99:602-7.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 602-607
    • Lopez, R.A.1    Schoetz, S.2    DeAngelis, K.3
  • 80
    • 42049103528 scopus 로고    scopus 로고
    • A mechanism for Ikaros regulation of human globin gene switching
    • Keys JR, Tallack MR, Zhan Y, et al. A mechanism for Ikaros regulation of human globin gene switching. Br J Haematol 2008; 141:398-406.
    • (2008) Br J Haematol , vol.141 , pp. 398-406
    • Keys, J.R.1    Tallack, M.R.2    Zhan, Y.3
  • 81
    • 62849093184 scopus 로고    scopus 로고
    • Ikaros and GATA-1 combinatorial effect is required for silencing of human gamma-globin genes
    • Bottardi S, Ross J, Bourgoin V, et al. Ikaros and GATA-1 combinatorial effect is required for silencing of human gamma-globin genes. Mol Cell Biol 2009;29:1526-37.
    • (2009) Mol Cell Biol , vol.29 , pp. 1526-1537
    • Bottardi, S.1    Ross, J.2    Bourgoin, V.3
  • 82
    • 62849092564 scopus 로고    scopus 로고
    • Evidence for a bigenic chromatin subdomain in regulation of the fetal-to-adult hemoglobin switch
    • Beauchemin H, Trudel M. Evidence for a bigenic chromatin subdomain in regulation of the fetal-to-adult hemoglobin switch. Mol Cell Biol 2009;29:1635-48.
    • (2009) Mol Cell Biol , vol.29 , pp. 1635-1648
    • Beauchemin, H.1    Trudel, M.2
  • 83
    • 33750465872 scopus 로고    scopus 로고
    • SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
    • Cai S, Lee CC, Kohwi-Shigematsu T. SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nat Genet 2006;38: 1278-88.
    • (2006) Nat Genet , vol.38 , pp. 1278-1288
    • Cai, S.1    Lee, C.C.2    Kohwi-Shigematsu, T.3
  • 84
    • 84864283337 scopus 로고    scopus 로고
    • Inter-MAR association contributes to transcriptionally active looping events in human beta-globin gene cluster
    • Wang L, Di LJ, Lv X, et al. Inter-MAR association contributes to transcriptionally active looping events in human beta-globin gene cluster. PLoS ONE 2009;4:e4629.
    • (2009) PLoS ONE , vol.4
    • Wang, L.1    Di, L.J.2    Lv, X.3
  • 85
    • 0033529654 scopus 로고    scopus 로고
    • The protein CTCF is required for the enhancer blocking activity of vertebrate insulators
    • Bell AC, West AG, Felsenfeld G. The protein CTCF is required for the enhancer blocking activity of vertebrate insulators. Cell 1999; 98:387-96.
    • (1999) Cell , vol.98 , pp. 387-396
    • Bell, A.C.1    West, A.G.2    Felsenfeld, G.3
  • 86
    • 33746063711 scopus 로고    scopus 로고
    • CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2
    • Kurukuti S, Tiwari VK, Tavoosidana G, et al. CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2. Proc Natl Acad Sci USA 2006;103:10684-9.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 10684-10689
    • Kurukuti, S.1    Tiwari, V.K.2    Tavoosidana, G.3
  • 87
    • 58149498240 scopus 로고    scopus 로고
    • CTCF-dependent enhancer-blocking by alternative chromatin loop formation
    • Hou C, Zhao H, Tanimoto K, et al. CTCF-dependent enhancer-blocking by alternative chromatin loop formation. Proc Natl Acad Sci USA 2008;105:20398-403.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 20398-20403
    • Hou, C.1    Zhao, H.2    Tanimoto, K.3
  • 88
    • 39449111307 scopus 로고    scopus 로고
    • Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
    • Stedman W, Kang H, Lin S, et al. Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators. EMBO J 2008;27:654-66.
    • (2008) EMBO J , vol.27 , pp. 654-666
    • Stedman, W.1    Kang, H.2    Lin, S.3
  • 89
    • 39149121436 scopus 로고    scopus 로고
    • Cohesin mediates transcriptional insulation by CCCTC-binding factor
    • Wendt KS, Yoshida K, Itoh T, et al. Cohesin mediates transcriptional insulation by CCCTC-binding factor. Nature 2008; 451:796-801.
    • (2008) Nature , vol.451 , pp. 796-801
    • Wendt, K.S.1    Yoshida, K.2    Itoh, T.3
  • 90
    • 38849121606 scopus 로고    scopus 로고
    • Cohesins functionally associate with CTCF on mammalian chromosome arms
    • Parelho V, Hadjur S, Spivakov M, et al. Cohesins functionally associate with CTCF on mammalian chromosome arms. Cell 2008;132 422-33.
    • (2008) Cell , vol.132 , pp. 422-433
    • Parelho, V.1    Hadjur, S.2    Spivakov, M.3
  • 92
    • 65649123756 scopus 로고    scopus 로고
    • Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster
    • Mishiro T, Ishihara K, Hino S, et al. Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster. EMBO J 2009;28:1234-45.
    • (2009) EMBO J , vol.28 , pp. 1234-1245
    • Mishiro, T.1    Ishihara, K.2    Hino, S.3
  • 93
    • 59849122478 scopus 로고    scopus 로고
    • Cutting edge: Developmental stage-specific recruitment of cohesin to CTCF sites throughout immunoglobulin loci during B lymphocyte development
    • Degner SC, Wong TP, Jankevicius G, et al. Cutting edge: developmental stage-specific recruitment of cohesin to CTCF sites throughout immunoglobulin loci during B lymphocyte development. J Immunol 2009;182:44-8.
    • (2009) J Immunol , vol.182 , pp. 44-48
    • Degner, S.C.1    Wong, T.P.2    Jankevicius, G.3
  • 94
    • 33846159467 scopus 로고    scopus 로고
    • Novel binding partners of Ldb1 are required for haematopoietic development
    • Meier N, Krpic S, Rodriguez P, et al. Novel binding partners of Ldb1 are required for haematopoietic development. Development 2006;133:4913-23.
    • (2006) Development , vol.133 , pp. 4913-4923
    • Meier, N.1    Krpic, S.2    Rodriguez, P.3
  • 95
    • 10744223084 scopus 로고    scopus 로고
    • Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics
    • Brand M, Ranish JA, Kummer NT, et al. Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics. Nat StructMol Biol 2004;11:73-80.
    • (2004) Nat StructMol Biol , vol.11 , pp. 73-80
    • Brand, M.1    Ranish, J.A.2    Kummer, N.T.3
  • 97
    • 36749056884 scopus 로고    scopus 로고
    • A positive role for NLI/Ldb1 in long-range beta-globin locus control region function
    • Song SH, Hou C, Dean A. A positive role for NLI/Ldb1 in long-range beta-globin locus control region function. Mol Cell 2007;28 810-22.
    • (2007) Mol Cell , vol.28 , pp. 810-822
    • Song, S.H.1    Hou, C.2    Dean, A.3
  • 98
    • 0032478276 scopus 로고    scopus 로고
    • CREB-binding protein cooperates with transcription factor GATA-1 and is required for erythroid differentiation
    • Blobel GA, Nakajima T, Eckner R, et al. CREB-binding protein cooperates with transcription factor GATA-1 and is required for erythroid differentiation. Proc Natl Acad Sci USA 1998;95 2061-6.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 2061-2066
    • Blobel, G.A.1    Nakajima, T.2    Eckner, R.3
  • 99
    • 34250183131 scopus 로고    scopus 로고
    • Dissecting molecular steps in chromatin domain activation during hematopoietic differentiation
    • Kim SI, Bultman SJ, Jing H, et al. Dissecting molecular steps in chromatin domain activation during hematopoietic differentiation. Mol Cell Biol 2007;27: 4551-65.
    • (2007) Mol Cell Biol , vol.27 , pp. 4551-4565
    • Kim, S.I.1    Bultman, S.J.2    Jing, H.3
  • 100
    • 60549103722 scopus 로고    scopus 로고
    • BRG1 requirement for long-range interaction of a locus control region with a downstream promoter
    • Kim SI, Bultman SJ, Kiefer CM, et al. BRG1 requirement for long-range interaction of a locus control region with a downstream promoter. Proc Natl Acad Sci USA 2009;106: 2259-64.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 2259-2264
    • Kim, S.I.1    Bultman, S.J.2    Kiefer, C.M.3
  • 101
    • 0033578883 scopus 로고    scopus 로고
    • Requirement of an E1A-sensitive coactivator for long-range transactivation by the beta-globin locus control region
    • Forsberg EC, Johnson K, Zaboikina TN, et al. Requirement of an E1A-sensitive coactivator for long-range transactivation by the beta-globin locus control region. J Biol Chem 1999;274 26850-9.
    • (1999) J Biol Chem , vol.274 , pp. 26850-26859
    • Forsberg, E.C.1    Johnson, K.2    Zaboikina, T.N.3
  • 102
    • 0034916613 scopus 로고    scopus 로고
    • p300/CBP proteins: HATs for transcriptional bridges and scaffolds
    • Chan HM, La Thangue NB. p300/CBP proteins: HATs for transcriptional bridges and scaffolds. J Cell Sci 2001;114: 2363-73.
    • (2001) J Cell Sci , vol.114 , pp. 2363-2373
    • Chan, H.M.1    La Thangue, N.B.2
  • 103
    • 0032544123 scopus 로고    scopus 로고
    • Acetylation and modulation of erythroid Kruppel-like factor (EKLF) activity by interaction with histone acetyltransferases
    • Zhang W, Bieker JJ. Acetylation and modulation of erythroid Kruppel-like factor (EKLF) activity by interaction with histone acetyltransferases. Proc Natl Acad Sci USA 1998;95:9855-60.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 9855-9860
    • Zhang, W.1    Bieker, J.J.2
  • 104
    • 0035815647 scopus 로고    scopus 로고
    • Stimulation of NF-E2 DNA binding by CREB-binding protein (CBP)-mediated acetylation
    • Hung HL, Kim AY, Hong W, et al. Stimulation of NF-E2 DNA binding by CREB-binding protein (CBP)-mediated acetylation. J Biol Chem 2001;276:10715-21.
    • (2001) J Biol Chem , vol.276 , pp. 10715-10721
    • Hung, H.L.1    Kim, A.Y.2    Hong, W.3
  • 105
    • 18844451820 scopus 로고    scopus 로고
    • Mediator and the mechanism of transcriptional activation
    • Kornberg RD. Mediator and the mechanism of transcriptional activation. Trends Biochem Sci 2005;30:235-9.
    • (2005) Trends Biochem Sci , vol.30 , pp. 235-239
    • Kornberg, R.D.1
  • 106
    • 0344270881 scopus 로고    scopus 로고
    • Association of the Mediator complex with enhancers of active genes
    • Kuras L, Borggrefe T, Kornberg RD. Association of the Mediator complex with enhancers of active genes. Proc Natl Acad Sci USA 2003;100 13887-91.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 13887-13891
    • Kuras, L.1    Borggrefe, T.2    Kornberg, R.D.3
  • 107
    • 33845500700 scopus 로고    scopus 로고
    • The mediator complex functions as a coactivator for GATA-1 in erythropoiesis via subunit Med1/ TRAP220
    • Stumpf M, Waskow C, Krotschel M, et al. The mediator complex functions as a coactivator for GATA-1 in erythropoiesis via subunit Med1/ TRAP220. Proc Natl Acad Sci USA 2006;103:18504-9.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 18504-18509
    • Stumpf, M.1    Waskow, C.2    Krotschel, M.3
  • 108
    • 63149139035 scopus 로고    scopus 로고
    • Distinct modes of gene regulation by a cell-specific transcriptional activator
    • Sengupta T, Cohet N, Morle F, et al. Distinct modes of gene regulation by a cell-specific transcriptional activator. Proc Natl Acad Sci USA 2009;106:4213-8.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 4213-4218
    • Sengupta, T.1    Cohet, N.2    Morle, F.3
  • 109
    • 33847205083 scopus 로고    scopus 로고
    • What are the molecular ties that maintain genomic loops?
    • Marenduzzo D, Faro-Trindade I, Cook PR. What are the molecular ties that maintain genomic loops? Trends Genet 2007;23:126-33.
    • (2007) Trends Genet , vol.23 , pp. 126-133
    • Marenduzzo, D.1    Faro-Trindade, I.2    Cook, P.R.3
  • 110
    • 38149133051 scopus 로고    scopus 로고
    • Transcription factories are nuclear subcompartments that remain in the absence of transcription
    • Mitchell JA, Fraser P. Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev 2008;22:20-5.
    • (2008) Genes Dev , vol.22 , pp. 20-25
    • Mitchell, J.A.1    Fraser, P.2
  • 111
    • 45749154811 scopus 로고    scopus 로고
    • Maintenance of Long-Range DNA Interactions after Inhibition of Ongoing RNA Polymerase II Transcription
    • Palstra RJ, Simonis M, Klous P, et al. Maintenance of Long-Range DNA Interactions after Inhibition of Ongoing RNA Polymerase II Transcription. PLoS ONE 2008;3:e1661.
    • (2008) PLoS ONE , vol.3
    • Palstra, R.J.1    Simonis, M.2    Klous, P.3
  • 112
    • 17444369067 scopus 로고    scopus 로고
    • Remote control of gene transcription
    • West AG, Fraser P. Remote control of gene transcription. Hum Mol Genet 2005;14 Spec No 1:R101-11.
    • (2005) Hum Mol Genet , vol.14 , Issue.SPEC 1
    • West, A.G.1    Fraser, P.2
  • 113
    • 23944446057 scopus 로고    scopus 로고
    • Replication and transcription: Shaping the landscape of the genome
    • Chakalova L, Debrand E, Mitchell JA, et al. Replication and transcription: Shaping the landscape of the genome. Nat Rev Genet 2005;6:669-77.
    • (2005) Nat Rev Genet , vol.6 , pp. 669-677
    • Chakalova, L.1    Debrand, E.2    Mitchell, J.A.3
  • 114
    • 0036923739 scopus 로고    scopus 로고
    • Dynamics of enhancer-promoter communication during differentiation-induced gene activation
    • Hatzis P, Talianidis I. Dynamics of enhancer-promoter communication during differentiation-induced gene activation. Mol Cell 2002; 10:1467-77.
    • (2002) Mol Cell , vol.10 , pp. 1467-1477
    • Hatzis, P.1    Talianidis, I.2
  • 115
    • 33646021963 scopus 로고    scopus 로고
    • Long-range directional movement of an interphase chromosome site
    • Chuang CH, Carpenter AE, Fuchsova B, et al. Long-range directional movement of an interphase chromosome site. Curr Biol 2006;16 825-31.
    • (2006) Curr Biol , vol.16 , pp. 825-831
    • Chuang, C.H.1    Carpenter, A.E.2    Fuchsova, B.3
  • 116
    • 37249038708 scopus 로고    scopus 로고
    • Actin-dependent intranuclear repositioning of an active gene locus in vivo
    • Dundr M, Ospina JK, Sung MH, et al. Actin-dependent intranuclear repositioning of an active gene locus in vivo. J Cell Biol 2007; 179:1095-103.
    • (2007) J Cell Biol , vol.179 , pp. 1095-1103
    • Dundr, M.1    Ospina, J.K.2    Sung, M.H.3
  • 117
    • 0036957751 scopus 로고    scopus 로고
    • Transvection effects in Drosophila
    • Duncan IW. Transvection effects in Drosophila. Annu Rev Genet 2002;36:521-56.
    • (2002) Annu Rev Genet , vol.36 , pp. 521-556
    • Duncan, I.W.1
  • 118
    • 0024334963 scopus 로고
    • An enhancer stimulates transcription in trans when attached to the promoter via a protein bridge
    • Mueller-Storm HP, Sogo JM, Schaffner W. An enhancer stimulates transcription in trans when attached to the promoter via a protein bridge. Cell 1989;58:767-77.
    • (1989) Cell , vol.58 , pp. 767-777
    • Mueller-Storm, H.P.1    Sogo, J.M.2    Schaffner, W.3
  • 119
    • 0030726908 scopus 로고    scopus 로고
    • Locus control regions: Overcoming heterochromatin-induced gene inactivation in mammals
    • Kioussis D, Festenstein R. Locus control regions: Overcoming heterochromatin-induced gene inactivation in mammals. Curr Opin Genet Dev 1997;7:614-9.
    • (1997) Curr Opin Genet Dev , vol.7 , pp. 614-619
    • Kioussis, D.1    Festenstein, R.2
  • 120
    • 0032185226 scopus 로고    scopus 로고
    • The beta-globin LCR is not necessary for an open chromatin structure or developmentally regulated transcription of the native mouse beta-globin locus
    • Epner E, Reik A, Cimbora D, et al. The beta-globin LCR is not necessary for an open chromatin structure or developmentally regulated transcription of the native mouse beta-globin locus. Mol Cell 1998;2:447-55.
    • (1998) Mol Cell , vol.2 , pp. 447-455
    • Epner, E.1    Reik, A.2    Cimbora, D.3
  • 121
    • 0035949586 scopus 로고    scopus 로고
    • The murine beta-globin locus control region regulates the rate of transcription but not the hyperacetylation of histones at the active genes
    • Schubeler D, Groudine M, Bender MA. The murine beta-globin locus control region regulates the rate of transcription but not the hyperacetylation of histones at the active genes. Proc Natl Acad Sci USA 2001;98 11432-7.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 11432-11437
    • Schubeler, D.1    Groudine, M.2    Bender, M.A.3
  • 122
    • 34248220369 scopus 로고    scopus 로고
    • Lineage-specific transcription factors in multipotent hematopoietic progenitors: A little bit goes a long way
    • Bottardi S, Ghiam AF, Bergeron F, et al. Lineage-specific transcription factors in multipotent hematopoietic progenitors: A little bit goes a long way. Cell Cycle 2007;6: 1035-9.
    • (2007) Cell Cycle , vol.6 , pp. 1035-1039
    • Bottardi, S.1    Ghiam, A.F.2    Bergeron, F.3
  • 123
    • 9644302474 scopus 로고    scopus 로고
    • Recruitment of transcription complexes to the beta-globin gene locus in vivo and in vitro
    • Vieira KF, Levings PP, Hill MA, et al. Recruitment of transcription complexes to the beta-globin gene locus in vivo and in vitro. J Biol Chem 2004;279:50350-7.
    • (2004) J Biol Chem , vol.279 , pp. 50350-50357
    • Vieira, K.F.1    Levings, P.P.2    Hill, M.A.3
  • 124
    • 0037447160 scopus 로고    scopus 로고
    • The beta-globin locus control region (LCR) functions primarily by enhancing the transition from transcription initiation to elongation
    • Sawado T, Halow J, Bender MA, et al. The beta-globin locus control region (LCR) functions primarily by enhancing the transition from transcription initiation to elongation. Genes Dev 2003;17 1009-18.
    • (2003) Genes Dev , vol.17 , pp. 1009-1018
    • Sawado, T.1    Halow, J.2    Bender, M.A.3
  • 125
    • 33744779614 scopus 로고    scopus 로고
    • The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation
    • Ragoczy T, Bender MA, Telling A, et al. The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation. Genes Dev 2006;20:1447-57.
    • (2006) Genes Dev , vol.20 , pp. 1447-1457
    • Ragoczy, T.1    Bender, M.A.2    Telling, A.3
  • 126
    • 60149091656 scopus 로고    scopus 로고
    • ChIP-seq accurately predicts tissue-specific activity of enhancers
    • Visel A, Blow MJ, Li Z, et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 2009;457:854-8.
    • (2009) Nature , vol.457 , pp. 854-858
    • Visel, A.1    Blow, M.J.2    Li, Z.3
  • 127
    • 65549104157 scopus 로고    scopus 로고
    • Histone modifications at human enhancers reflect global cell-type-specific gene expression
    • Heintzman ND, Hon GC, Hawkins RD, et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 2009;459:108-12.
    • (2009) Nature , vol.459 , pp. 108-112
    • Heintzman, N.D.1    Hon, G.C.2    Hawkins, R.D.3
  • 128
    • 63849308888 scopus 로고    scopus 로고
    • Global mapping of protein-DNA interactions in vivo by digital genomic foot-printing
    • Hesselberth JR, Chen X, Zhang Z, et al. Global mapping of protein-DNA interactions in vivo by digital genomic foot-printing. Nat Methods 2009;6:283-9.
    • (2009) Nat Methods , vol.6 , pp. 283-289
    • Hesselberth, J.R.1    Chen, X.2    Zhang, Z.3
  • 129
    • 58149085861 scopus 로고    scopus 로고
    • Purification of proteins associated with specific genomic Loci
    • Dejardin J, Kingston RE. Purification of proteins associated with specific genomic Loci. Cell 2009;136:175-86.
    • (2009) Cell , vol.136 , pp. 175-186
    • Dejardin, J.1    Kingston, R.E.2
  • 130
    • 59949099230 scopus 로고    scopus 로고
    • A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements
    • Mittler G, Butter F, Mann M. A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements. Genome Res 2009;19: 284-93.
    • (2009) Genome Res , vol.19 , pp. 284-293
    • Mittler, G.1    Butter, F.2    Mann, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.