-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R.I., W. Ludwig, and K.H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbial. Rev. 59:143–169.
-
(1995)
Microbial. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
2
-
-
0036795810
-
Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants
-
Araújo, W.L., J. Marcon, W.J. Maccheroni, J.D. van Elsas, J.W.L. van Vuurde, and J.L. Azevedo. 2002. Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl. Environ. Microbiol. 68:4906–4914.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4906-4914
-
-
Araújo, W.L.1
Marcon, J.2
Maccheroni, W.J.3
van Elsas, J.D.4
van Vuurde, J.W.L.5
Azevedo, J.L.6
-
3
-
-
21244471167
-
Growth response of Atriplex nummularia to inoculation with arbuscular mycorrhizal fungi at different salinity levels
-
Asghari, H.R., P. Marschner, S.E. Smith, and F.A. Smith. 2005. Growth response of Atriplex nummularia to inoculation with arbuscular mycorrhizal fungi at different salinity levels. Plant Soil 273:245–256.
-
(2005)
Plant Soil
, vol.273
, pp. 245-256
-
-
Asghari, H.R.1
Marschner, P.2
Smith, S.E.3
Smith, F.A.4
-
4
-
-
21244448034
-
Field studies on the environmental fate of the Cry1Ab Bt-toxin produced by transgenic maize (MON810) and its effect on bacterial communities in the maize rhizosphere
-
Baumgarte, S. and C.C. Tebbe. 2005. Field studies on the environmental fate of the Cry1Ab Bt-toxin produced by transgenic maize (MON810) and its effect on bacterial communities in the maize rhizosphere. Mol. Ecol. 14:2539–2551.
-
(2005)
Mol. Ecol.
, vol.14
, pp. 2539-2551
-
-
Baumgarte, S.1
Tebbe, C.C.2
-
5
-
-
13544264433
-
Assessment of genotypic diversity of antibiotic-producing Pseudomonas species in the rhizosphere by denaturing gradient gel electrophoresis
-
Bergsma-Vlami, M., M.E. Prins, M. Staats, and J.M. Raaijmakers. 2005. Assessment of genotypic diversity of antibiotic-producing Pseudomonas species in the rhizosphere by denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 71:993–1003.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 993-1003
-
-
Bergsma-Vlami, M.1
Prins, M.E.2
Staats, M.3
Raaijmakers, J.M.4
-
7
-
-
32044468924
-
Impact of Bt corn on rhizospheric and soil eubacterial communities and on beneficial mycorrhizal symbiosis in experimental microcosms
-
Castaldini, M., A. Turrini, C. Sbrana, A. Benedetti, M. Marchionni, S. Mocali, A. Fabiani, S. Landi, F. Santomassimo, B. Pietrangeli, M.P. Nuti, N. Miclaus, and M. Giovannetti. 2005. Impact of Bt corn on rhizospheric and soil eubacterial communities and on beneficial mycorrhizal symbiosis in experimental microcosms. Appl. Environ. Microbiol. 71:6719–6729.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6719-6729
-
-
Castaldini, M.1
Turrini, A.2
Sbrana, C.3
Benedetti, A.4
Marchionni, M.5
Mocali, S.6
Fabiani, A.7
Landi, S.8
Santomassimo, F.9
Pietrangeli, B.10
Nuti, M.P.11
Miclaus, N.12
Giovannetti, M.13
-
8
-
-
0034964968
-
The diversity of archaea and bacteria in association with the roots of Zea mays L
-
Chelius, M.K., and E.W. Triplett. 2001. The diversity of archaea and bacteria in association with the roots of Zea mays L. Microb. Ecol. 41:252–263.
-
(2001)
Microb. Ecol.
, vol.41
, pp. 252-263
-
-
Chelius, M.K.1
Triplett, E.W.2
-
9
-
-
0038718850
-
Endophytic colonisation of plant roots by nitrogen-fixing bacteria
-
Cocking, E.C. 2003. Endophytic colonisation of plant roots by nitrogen-fixing bacteria. Plant Soil 252:169–175.
-
(2003)
Plant Soil
, vol.252
, pp. 169-175
-
-
Cocking, E.C.1
-
10
-
-
1642399010
-
Analysis of the endophytic actinobacterial population in the roots of wheat (Triticum aestivum L.) by terminal restriction fragment length polymorphism and sequencing of 16S rRNA clones
-
Conn, V.M., and C.M.M. Franco. 2004. Analysis of the endophytic actinobacterial population in the roots of wheat (Triticum aestivum L.) by terminal restriction fragment length polymorphism and sequencing of 16S rRNA clones. Appl. Environ. Microbiol. 70:1787–1794.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1787-1794
-
-
Conn, V.M.1
Franco, C.M.M.2
-
12
-
-
33645977196
-
Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds
-
Costa, R., M. Götz, N. Mrotzek, J. Lottmann, G. Berg, and K. Smalla. 2006. Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds. FEMS Microbiol. Ecol. 56:236–249.
-
(2006)
FEMS Microbiol. Ecol.
, vol.56
, pp. 236-249
-
-
Costa, R.1
Götz, M.2
Mrotzek, N.3
Lottmann, J.4
Berg, G.5
Smalla, K.6
-
13
-
-
33750919098
-
Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants
-
Costa, R., J.F. Salles, G. Berg, and K. Smalla. 2006. Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants. Environ. Microbiol. 8:2136–2149.
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 2136-2149
-
-
Costa, R.1
Salles, J.F.2
Berg, G.3
Smalla, K.4
-
14
-
-
9344244076
-
Rhizosphere bacterial community composition in natural stands of Carex arenaria (sand sedge) is determined by bulk soil community composition
-
De Ridder-Duine, A.S., G.A. Kowalchuk, P.J.A. Klein Gunnewiek, W. Smant, J.A. van Veen, and W. de Boer. 2005. Rhizosphere bacterial community composition in natural stands of Carex arenaria (sand sedge) is determined by bulk soil community composition. Soil Biol. Biochem. 37:349–357.
-
(2005)
Soil Biol. Biochem.
, vol.37
, pp. 349-357
-
-
De Ridder-Duine, A.S.1
Kowalchuk, G.A.2
Klein Gunnewiek, P.J.A.3
Smant, W.4
van Veen, J.A.5
de Boer, W.6
-
15
-
-
0347360167
-
Molecular profiling of microbial communities associated with seeds of Beta vulgaris subsp. vulgaris (sugar beet)
-
Dent, K.C., J.R. Stephen, and W.E. Finch-Savage. 2004. Molecular profiling of microbial communities associated with seeds of Beta vulgaris subsp. vulgaris (sugar beet). J. Microbiol. Methods 56:17–26.
-
(2004)
J. Microbiol. Methods
, vol.56
, pp. 17-26
-
-
Dent, K.C.1
Stephen, J.R.2
Finch-Savage, W.E.3
-
16
-
-
0035146134
-
Novel bacterial lineages at the (sub) dvision level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms
-
Derakshani, M., T. Lukow, and W. Liesack. 2001. Novel bacterial lineages at the (sub) dvision level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms. Appl. Environ. Microbiol. 67:623–631.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 623-631
-
-
Derakshani, M.1
Lukow, T.2
Liesack, W.3
-
17
-
-
29144448799
-
Effect of elevated tropospheric ozone on the structure of bacterial communities inhabiting the rhizosphere of herbaceous plants native to Germany
-
Dohrmann, A.B., and C.C. Tebbe. 2005. Effect of elevated tropospheric ozone on the structure of bacterial communities inhabiting the rhizosphere of herbaceous plants native to Germany. Appl. Environ. Microbiol. 71:7750–7758.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 7750-7758
-
-
Dohrmann, A.B.1
Tebbe, C.C.2
-
18
-
-
0035163562
-
Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA
-
Duineveld, B.M., G.A. Kowalchuk, A. Keijzer, J.D. van Elsas, and J.A. van Veen. 2001. Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA. Appl. Environ. Microbiol. 67:172–178.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 172-178
-
-
Duineveld, B.M.1
Kowalchuk, G.A.2
Keijzer, A.3
van Elsas, J.D.4
van Veen, J.A.5
-
19
-
-
0031791939
-
Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns
-
Duineveld, B.M., A.S. Rosado, J.D. van Elsas, and J.A. van Veen. 1998. Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns. Appl. Environ. Microbiol. 64:4950–4957.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4950-4957
-
-
Duineveld, B.M.1
Rosado, A.S.2
van Elsas, J.D.3
van Veen, J.A.4
-
20
-
-
0033941482
-
Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis
-
Dunbar, J., L.O. Ticknor, and C.R. Kuske. 2000. Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl. Environ. Microbiol. 66:2943–2950.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2943-2950
-
-
Dunbar, J.1
Ticknor, L.O.2
Kuske, C.R.3
-
21
-
-
2142802649
-
Seasonal changes in the rhizosphere microbial communities associated with field-grown genetically modified canola (Brassica napus)
-
Dunfield, K.E., and J.J. Germida. 2003. Seasonal changes in the rhizosphere microbial communities associated with field-grown genetically modified canola (Brassica napus). Appl. Environ. Microbiol. 69:7310–7318.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7310-7318
-
-
Dunfield, K.E.1
Germida, J.J.2
-
22
-
-
46349089612
-
Phylogenetic analysis of nifH gene sequences from nitrogen-fixing endophytic bacteria associated with the roots of three rice varieties
-
Elbeltagy, A., and Y. Ando. 2005. Phylogenetic analysis of nifH gene sequences from nitrogen-fixing endophytic bacteria associated with the roots of three rice varieties. J. Food, Agri. Environ. 3:237–242.
-
(2005)
J. Food, Agri. Environ.
, vol.3
, pp. 237-242
-
-
Elbeltagy, A.1
Ando, Y.2
-
23
-
-
11144303552
-
Comparing field and microcosm experiments: a case study on methano- and methylotrophic bacteria in paddy soil
-
Eller, G., M. Krüger, and P. Frenzel. 2005. Comparing field and microcosm experiments: a case study on methano- and methylotrophic bacteria in paddy soil. FEMS Microbiol. Ecol. 51:279–291.
-
(2005)
FEMS Microbiol. Ecol.
, vol.51
, pp. 279-291
-
-
Eller, G.1
Krüger, M.2
Frenzel, P.3
-
24
-
-
22144454673
-
Bacterial diversity in rhizospheres of nontransgenic and transgenic corn
-
Fang, M., R.J. Kremer, P.P. Motavalli, and G. Davis. 2005. Bacterial diversity in rhizospheres of nontransgenic and transgenic corn. Appl. Environ. Microbiol. 71:4132–4136.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 4132-4136
-
-
Fang, M.1
Kremer, R.J.2
Motavalli, P.P.3
Davis, G.4
-
25
-
-
2942623613
-
Molecular profiling of rhizosphere microbial communities associated with healthy and diseased Black Spruce (Picea mariana) seedlings grown in a nursery
-
Filion, M., R.C. Hamelin, L. Bernier, and M. St-Arnaud. 2004. Molecular profiling of rhizosphere microbial communities associated with healthy and diseased Black Spruce (Picea mariana) seedlings grown in a nursery. Appl. Environ. Microbiol. 70:3541–3551.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3541-3551
-
-
Filion, M.1
Hamelin, R.C.2
Bernier, L.3
St-Arnaud, M.4
-
26
-
-
25444460514
-
Inconspicuous restraint of rice seedling growth by root infecting fungi in soil of a rice paddy field
-
Furuya, H., T. Matsumoto, S. Fuji, and H. Naito. 2003. Inconspicuous restraint of rice seedling growth by root infecting fungi in soil of a rice paddy field. J. Gen. Plant Pathol. 69:115–119.
-
(2003)
J. Gen. Plant Pathol.
, vol.69
, pp. 115-119
-
-
Furuya, H.1
Matsumoto, T.2
Fuji, S.3
Naito, H.4
-
27
-
-
25444440602
-
Deleterious effects of fungi isolated from paddy soils on seminal root of rice
-
Furuya, H., K. Tubaki, T. Matsumoto, S. Fuji, and H. Naito. 2005. Deleterious effects of fungi isolated from paddy soils on seminal root of rice. J. Gen. Plant Pathol. 71:333–339.
-
(2005)
J. Gen. Plant Pathol.
, vol.71
, pp. 333-339
-
-
Furuya, H.1
Tubaki, K.2
Matsumoto, T.3
Fuji, S.4
Naito, H.5
-
28
-
-
33751018849
-
Fungal endophytes in potato roots studied by traditional isolation and cultivation-independent DNA-based methods
-
Götz, M., H. Nirenberg, S. Krause, H. Wolters, S. Draeger, A. Buchner, J. Lottmann, G. Berg, and K. Smalla. 2006. Fungal endophytes in potato roots studied by traditional isolation and cultivation-independent DNA-based methods. FEMS Microbiol. Ecol. 58:404–413.
-
(2006)
FEMS Microbiol. Ecol.
, vol.58
, pp. 404-413
-
-
Götz, M.1
Nirenberg, H.2
Krause, S.3
Wolters, H.4
Draeger, S.5
Buchner, A.6
Lottmann, J.7
Berg, G.8
Smalla, K.9
-
29
-
-
0034968080
-
Analysis of endophytic bacterial communities of potato by plating and denaturing gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments
-
Garbeva, P., L.S. Overbeek, J.W. Vuurde, and J.D. Elsas. 2001. Analysis of endophytic bacterial communities of potato by plating and denaturing gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments. Microb. Ecol. 41:369–383.
-
(2001)
Microb. Ecol.
, vol.41
, pp. 369-383
-
-
Garbeva, P.1
Overbeek, L.S.2
Vuurde, J.W.3
Elsas, J.D.4
-
30
-
-
84907115930
-
Role of arbuscular mycorrhizal fungi in up take of phosphorus and nitrogen from soil
-
Geroge, E., H. Marschner, and I. Jakobsen. 1995. Role of arbuscular mycorrhizal fungi in up take of phosphorus and nitrogen from soil. Crit. Rev. Biotechnol. 15:257–270.
-
(1995)
Crit. Rev. Biotechnol.
, vol.15
, pp. 257-270
-
-
Geroge, E.1
Marschner, H.2
Jakobsen, I.3
-
31
-
-
0038493638
-
Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics
-
Gomes, N.C.M., O. Fagbola, R. Costa, N.G. Rumjanek, A. Buchner, L. Mendona-Hagler, and K. Smalla. 2003. Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics. Appl. Environ. Microbiol. 69:3758–3766.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 3758-3766
-
-
Gomes, N.C.M.1
Fagbola, O.2
Costa, R.3
Rumjanek, N.G.4
Buchner, A.5
Mendona-Hagler, L.6
Smalla, K.7
-
32
-
-
33745156094
-
Succession of bacterial communities during early plant development: transition from seed to root and effect of compost amendment
-
Green, S.J., E. Inbar, F.C. Michel Jr., H. Hadar, and D. Minz. 2006. Succession of bacterial communities during early plant development: transition from seed to root and effect of compost amendment. Appl. Environ. Microbiol. 72:3975–3983.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 3975-3983
-
-
Green, S.J.1
Inbar, E.2
Michel, F.C.3
Hadar, H.4
Minz, D.5
-
33
-
-
0036049483
-
Effects of transgenic glufosinate-tolerant oilseed rape (Brassica napus) and the associated herbicide application on eubacterial and Pseudomonas communities in the rhizosphere
-
Gyamfi, S., U. Pfeifer, M. Stierschneider, and A. Sessitsch. 2002. Effects of transgenic glufosinate-tolerant oilseed rape (Brassica napus) and the associated herbicide application on eubacterial and Pseudomonas communities in the rhizosphere. FEMS Microbiol. Ecol. 41:181–190.
-
(2002)
FEMS Microbiol. Ecol.
, vol.41
, pp. 181-190
-
-
Gyamfi, S.1
Pfeifer, U.2
Stierschneider, M.3
Sessitsch, A.4
-
34
-
-
0036053164
-
nifH gene diversity in the bacterial community associated with the rhizosphere of Molinia coerulea, an oligonitrophilic perennial grass
-
Hamelin, J., N. Fromin, S. Tarnawski, S. Teyssier-Cuvelle, and M. Aragno. 2002. nifH gene diversity in the bacterial community associated with the rhizosphere of Molinia coerulea, an oligonitrophilic perennial grass. Environ. Microbiol. 4:477–481.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 477-481
-
-
Hamelin, J.1
Fromin, N.2
Tarnawski, S.3
Teyssier-Cuvelle, S.4
Aragno, M.5
-
35
-
-
0029851978
-
Identification of root rot fungi in nursery seedlings by nested multiplex PCR
-
Hamelin, R.C., P. Bérubé, M. Gignac, and M. Bourassa. 1996. Identification of root rot fungi in nursery seedlings by nested multiplex PCR. Appl. Environ. Microbiol. 62:4026–4031.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 4026-4031
-
-
Hamelin, R.C.1
Bérubé, P.2
Gignac, M.3
Bourassa, M.4
-
36
-
-
0036196294
-
Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors
-
Heuer, H., R.M. Kroppenstedt, J. Lottmann, G. Berg, and K. Smalla. 2002. Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors. Appl. Environ. Microbiol. 68:1325–1335.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 1325-1335
-
-
Heuer, H.1
Kroppenstedt, R.M.2
Lottmann, J.3
Berg, G.4
Smalla, K.5
-
37
-
-
0030739128
-
Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
-
Heuer, H., M. Krsek, P. Baker, K. Smalla, and E.M. Wellington. 1997. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63:3233–3241.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3233-3241
-
-
Heuer, H.1
Krsek, M.2
Baker, P.3
Smalla, K.4
Wellington, E.M.5
-
38
-
-
0032997459
-
Bacterial phyllosphere communities of Solanum tuberosum L. and T4-lysozyme-producing transgenic variants
-
Heuer, H., and K. Smalla. 1999. Bacterial phyllosphere communities of Solanum tuberosum L. and T4-lysozyme-producing transgenic variants. FEMS Microbiol. Ecol. 28:357–371.
-
(1999)
FEMS Microbiol. Ecol.
, vol.28
, pp. 357-371
-
-
Heuer, H.1
Smalla, K.2
-
39
-
-
0025657408
-
Population biology and epidemiology of Pseudomonas syringae
-
Hirano, S., and C. Upper. 1990. Population biology and epidemiology of Pseudomonas syringae. Annu. Rev. Phytopathol. 28:155–177.
-
(1990)
Annu. Rev. Phytopathol.
, vol.28
, pp. 155-177
-
-
Hirano, S.1
Upper, C.2
-
40
-
-
0035458355
-
Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling
-
Horz, H.P., M.T. Yimga, and W. Liesack. 2001. Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling. Appl. Environ. Microbiol. 67:4177–4185.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4177-4185
-
-
Horz, H.P.1
Yimga, M.T.2
Liesack, W.3
-
41
-
-
2442636907
-
Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense
-
Idris, R., R. Trifonova, M. Puschenreiter, W.W. Wenzel, and A. Sessitsch. 2004. Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense. Appl. Environ. Microbiol. 70:2667–2677.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2667-2677
-
-
Idris, R.1
Trifonova, R.2
Puschenreiter, M.3
Wenzel, W.W.4
Sessitsch, A.5
-
42
-
-
52649180014
-
Microbial diversity in milled rice as revealed by ribosomal intergenic spacer analysis
-
In press
-
Ikeda, S., S. Fuji, T. Sato, H. Furuya, H. Naito, N. Ytow, H. Ezura, K. Minamisawa, and T. Fujimura. 2007. Microbial diversity in milled rice as revealed by ribosomal intergenic spacer analysis. Microbes Environ. 22: In press.
-
(2007)
Microbes Environ.
, vol.22
-
-
Ikeda, S.1
Fuji, S.2
Sato, T.3
Furuya, H.4
Naito, H.5
Ytow, N.6
Ezura, H.7
Minamisawa, K.8
Fujimura, T.9
-
43
-
-
70349971524
-
Community analysis of seed-associated microbes in forage crops using culture-independent methods
-
Ikeda, S., S. Fuji, T. Sato, N. Ytow, H. Ezura, K. Minamisawa, and T. Fujimura. 2006. Community analysis of seed-associated microbes in forage crops using culture-independent methods. Microbes Environ. 21:112–121.
-
(2006)
Microbes Environ.
, vol.21
, pp. 112-121
-
-
Ikeda, S.1
Fuji, S.2
Sato, T.3
Ytow, N.4
Ezura, H.5
Minamisawa, K.6
Fujimura, T.7
-
44
-
-
22544436996
-
Potential application of ribosomal intergenic spacer analysis to the microbial community analysis of agronomic products
-
Ikeda, S., T. Fujimura, and N. Ytow. 2005. Potential application of ribosomal intergenic spacer analysis to the microbial community analysis of agronomic products. J. Agric. Food Chem. 53:5604–5611.
-
(2005)
J. Agric. Food Chem.
, vol.53
, pp. 5604-5611
-
-
Ikeda, S.1
Fujimura, T.2
Ytow, N.3
-
45
-
-
51649125501
-
Microbial community analysis in the rhizosphere of a transgenic tomato that overexpresses 3-Hydroxy-3-methylglutaryl coenzyme A reductase
-
Ikeda, S., T. Omura, N. Ytow, H. Komaki, K. Minamisawa, H. Ezura, and T. Fujimura. 2006. Microbial community analysis in the rhizosphere of a transgenic tomato that overexpresses 3-Hydroxy-3-methylglutaryl coenzyme A reductase. Microbes Environ. 21:261–271.
-
(2006)
Microbes Environ.
, vol.21
, pp. 261-271
-
-
Ikeda, S.1
Omura, T.2
Ytow, N.3
Komaki, H.4
Minamisawa, K.5
Ezura, H.6
Fujimura, T.7
-
46
-
-
33645841759
-
Application of ribosomal intergenic spacer analysis to the characterization of microbial communities in rhizospheric soils of the Bt transgenic chrysanthemum
-
Ikeda, S., H. Shinoyama, Y. Yamanaka, N. Ytow, H. Ezura, and T. Fujimura. 2005. Application of ribosomal intergenic spacer analysis to the characterization of microbial communities in rhizospheric soils of the Bt transgenic chrysanthemum. Microbes Environ. 20:258–263.
-
(2005)
Microbes Environ.
, vol.20
, pp. 258-263
-
-
Ikeda, S.1
Shinoyama, H.2
Yamanaka, Y.3
Ytow, N.4
Ezura, H.5
Fujimura, T.6
-
47
-
-
33645855622
-
Soil microbial community analysis in the environmental risk assessment of transgenic plants
-
Ikeda, S., N. Ytow, H. Ezura, K. Minamisawa, and T. Fujimura. 2006. Soil microbial community analysis in the environmental risk assessment of transgenic plants. Plant Biotechnol. 23:137–151.
-
(2006)
Plant Biotechnol.
, vol.23
, pp. 137-151
-
-
Ikeda, S.1
Ytow, N.2
Ezura, H.3
Minamisawa, K.4
Fujimura, T.5
-
48
-
-
60249092998
-
Analysis of the molecular diversity of bacterial chitinase genes in the maize rhizosphere using culture-independent methods
-
Ikeda, S., N. Ytow, H. Ezura, K. Minamisawa, K. Miyashita, and T. Fujimura. 2007. Analysis of the molecular diversity of bacterial chitinase genes in the maize rhizosphere using culture-independent methods. Microbes Environ. 22:71–77.
-
(2007)
Microbes Environ.
, vol.22
, pp. 71-77
-
-
Ikeda, S.1
Ytow, N.2
Ezura, H.3
Minamisawa, K.4
Miyashita, K.5
Fujimura, T.6
-
49
-
-
26244455949
-
Elevated atmospheric CO2 alters soil microbial communities associated with trembling aspen (Populus tremuloides) roots
-
Janus, L.R., N.L. Angeloni, J. McCormack, S.T. Rier, N.C. Tuchman, and J.J. Kelly. 2005. Elevated atmospheric CO2 alters soil microbial communities associated with trembling aspen (Populus tremuloides) roots. Microbial. Ecol. 50:102–109.
-
(2005)
Microbial. Ecol.
, vol.50
, pp. 102-109
-
-
Janus, L.R.1
Angeloni, N.L.2
McCormack, J.3
Rier, S.T.4
Tuchman, N.C.5
Kelly, J.J.6
-
50
-
-
0037667121
-
Ultraviolet radiation alters maize phyllosphere bacterial diversity
-
Kadivar, H. and A.E. Stapleton. 2003. Ultraviolet radiation alters maize phyllosphere bacterial diversity. Microb. Ecol. 45:353–361.
-
(2003)
Microb. Ecol.
, vol.45
, pp. 353-361
-
-
Kadivar, H.1
Stapleton, A.E.2
-
51
-
-
0036405388
-
Microbial communities and their interactions in soil and rhizosphere ecosystems
-
Kent, A.D. and E.W. Triplett. 2002. Microbial communities and their interactions in soil and rhizosphere ecosystems. Annu. Rev. Microbiol. 56:211–236.
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 211-236
-
-
Kent, A.D.1
Triplett, E.W.2
-
52
-
-
0033965811
-
Response of soybean rhizosphere communities to human hygiene water addition as determined by community level physiological profiling (CLPP) and terminal restriction fragment length polymorphism (TRFLP) analysis
-
Kerkhof, L., M. Santoro, and J. Garland. 2000. Response of soybean rhizosphere communities to human hygiene water addition as determined by community level physiological profiling (CLPP) and terminal restriction fragment length polymorphism (TRFLP) analysis. FEMS Microbiol. Lett. 184:95–101.
-
(2000)
FEMS Microbiol. Lett.
, vol.184
, pp. 95-101
-
-
Kerkhof, L.1
Santoro, M.2
Garland, J.3
-
53
-
-
0033737312
-
Rhizosphere interactions and the exploitation of microbial agents for the biological control of plant-parasitic nematodes
-
Kerry, B.R. 2000. Rhizosphere interactions and the exploitation of microbial agents for the biological control of plant-parasitic nematodes. Annu. Rev. Phytopathol. 38:423–441.
-
(2000)
Annu. Rev. Phytopathol.
, vol.38
, pp. 423-441
-
-
Kerry, B.R.1
-
54
-
-
48249089994
-
Metagenomics: access to unculturable microbes in the environment
-
Kimura, N. 2006. Metagenomics: access to unculturable microbes in the environment. Microbes Environ. 21:201–215.
-
(2006)
Microbes Environ.
, vol.21
, pp. 201-215
-
-
Kimura, N.1
-
55
-
-
3242731518
-
Methods of studying soil microbial diversity
-
Kirk, J.L., L.A. Beaudette, M. Hart, P. Moutoglis, J.N. Klironomos, H. Lee, and J.T. Trevors. 2004. Methods of studying soil microbial diversity. J. Microbiol. Methods 58:169–188.
-
(2004)
J. Microbiol. Methods
, vol.58
, pp. 169-188
-
-
Kirk, J.L.1
Beaudette, L.A.2
Hart, M.3
Moutoglis, P.4
Klironomos, J.N.5
Lee, H.6
Trevors, J.T.7
-
56
-
-
0036729772
-
Influence of elevated CO2 on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis
-
Klamer, M., M.S. Roberts, L.H. Levine, B.G. Drake, and J.L. Garland. 2002. Influence of elevated CO2 on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 68:4370–4376.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4370-4376
-
-
Klamer, M.1
Roberts, M.S.2
Levine, L.H.3
Drake, B.G.4
Garland, J.L.5
-
57
-
-
27444441768
-
Influence of different Oryza cultivars on expression of nifH gene pools in roots of rice
-
Knauth, S., T. Hurek, D. Brar, and B. Reinhold-Hurek. 2005. Influence of different Oryza cultivars on expression of nifH gene pools in roots of rice. Environ. Microbiol. 7:1725–1733.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 1725-1733
-
-
Knauth, S.1
Hurek, T.2
Brar, D.3
Reinhold-Hurek, B.4
-
58
-
-
0002570482
-
Fungal community analysis using denaturing gradient gel electrophoresis (DGGE)
-
In A.D.L. Akkermans, J.D. van Elsas, and F.J. de Bruijn (eds.). 4.6. Kluwer Academic Publisher, Dordrecht
-
Kowalchuk, G.A. 1999. Fungal community analysis using denaturing gradient gel electrophoresis (DGGE), pp. 1–16. In A.D.L. Akkermans, J.D. van Elsas, and F.J. de Bruijn (eds.), Molecular Microbial Ecology Mannual, vol. 3.4.6. Kluwer Academic Publisher, Dordrecht.
-
(1999)
Molecular Microbial Ecology Mannual
, vol.3
, pp. 1-16
-
-
Kowalchuk, G.A.1
-
59
-
-
0036418046
-
Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms
-
Kowalchuk, G.A., D.S. Buma, W. de Boer, P.G.L. Klinkhamer, and J.A. van Veen. 2002. Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms. Antonie van Leeuwenhoek 81:509–520.
-
(2002)
Antonie van Leeuwenhoek
, vol.81
, pp. 509-520
-
-
Kowalchuk, G.A.1
Buma, D.S.2
de Boer, W.3
Klinkhamer, P.G.L.4
van Veen, J.A.5
-
60
-
-
0036006372
-
Community analysis of arbuscular mycorrhizal fungi associated with Ammophila arenaria in Dutch coastal sand dunes
-
Kowalchuk, G.A., F.A. De Souza, and J.A. van Veen. 2002. Community analysis of arbuscular mycorrhizal fungi associated with Ammophila arenaria in Dutch coastal sand dunes. Mol. Ecol. 11:571–581.
-
(2002)
Mol. Ecol.
, vol.11
, pp. 571-581
-
-
Kowalchuk, G.A.1
De Souza, F.A.2
van Veen, J.A.3
-
61
-
-
0030754258
-
Detection and characterization of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18S rDNA
-
Kowalchuk, G.A., S. Gerards, and J.W. Woldendorp. 1997. Detection and characterization of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18S rDNA. Appl. Environ. Microbiol. 63:3858–3865.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3858-3865
-
-
Kowalchuk, G.A.1
Gerards, S.2
Woldendorp, J.W.3
-
62
-
-
0030868433
-
Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
-
Kuske, C.R., S.M. Barns, and J.D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614–3621.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3614-3621
-
-
Kuske, C.R.1
Barns, S.M.2
Busch, J.D.3
-
63
-
-
0031749688
-
Changing concentration, lifetime and climate forcing of atmospheric methane
-
Lelieveld, J., P.J. Crutzen, and F.J. Dentener. 1998. Changing concentration, lifetime and climate forcing of atmospheric methane. Tellus Series B-Chem. Phys. Meteorol. 50:128–150.
-
(1998)
Tellus Series B-Chem. Phys. Meteorol.
, vol.50
, pp. 128-150
-
-
Lelieveld, J.1
Crutzen, P.J.2
Dentener, F.J.3
-
64
-
-
0033929066
-
Establishment of introduced antagonistic bacteria in the rhizosphere of transgenic potatoes and their effect on the bacterial community
-
Lottmann, J., H. Heuer, J. de Vries, A. Mahn, K. Düring, W. Wackernagel, K. Smalla, and G. Berg. 2000. Establishment of introduced antagonistic bacteria in the rhizosphere of transgenic potatoes and their effect on the bacterial community. FEMS Microbiol. Ecol. 33:41–49.
-
(2000)
FEMS Microbiol. Ecol.
, vol.33
, pp. 41-49
-
-
Lottmann, J.1
Heuer, H.2
de Vries, J.3
Mahn, A.4
Düring, K.5
Wackernagel, W.6
Smalla, K.7
Berg, G.8
-
65
-
-
23644433664
-
In situ stable isotope probing of methanogenic Archaea in the rice rhizosphere
-
Lu, Y., and R. Conrad. 2005. In situ stable isotope probing of methanogenic Archaea in the rice rhizosphere. Science 309:1088–1090.
-
(2005)
Science
, vol.309
, pp. 1088-1090
-
-
Lu, Y.1
Conrad, R.2
-
66
-
-
0035018373
-
Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia
-
Maarit Niemi, R., I. Heiskanen, K. Wallenius, and K. Lindstrom. 2001. Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia. J. Microbiol. Methods 45:155–165.
-
(2001)
J. Microbiol. Methods
, vol.45
, pp. 155-165
-
-
Maarit Niemi, R.1
Heiskanen, I.2
Wallenius, K.3
Lindstrom, K.4
-
67
-
-
0032772104
-
Microbial population changes during bioremediation of an experimental oil spill
-
MacNaughton, S.J., J.R. Stephen, A.D. Venosa, G.A. Davis, Y.J. Chang, and D.C. White. 1999. Microbial population changes during bioremediation of an experimental oil spill. Appl. Environ. Microbiol. 65:3566–3574.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3566-3574
-
-
MacNaughton, S.J.1
Stephen, J.R.2
Venosa, A.D.3
Davis, G.A.4
Chang, Y.J.5
White, D.C.6
-
68
-
-
0038493638
-
Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics
-
Marcial Gomes, N.C., O. Fagbola, R. Costa, N.G. Rumjanek, A. Buchner, L. Mendona-Hagler, and K. Smalla. 2003. Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics. Appl. Environ. Microbiol. 69:3758–3766.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 3758-3766
-
-
Marcial Gomes, N.C.1
Fagbola, O.2
Costa, R.3
Rumjanek, N.G.4
Buchner, A.5
Mendona-Hagler, L.6
Smalla, K.7
-
69
-
-
0038027258
-
Changes in bacterial community structure induced by mycorrhizal colonisation in split-root maize
-
Marschner, P., and K. Baumann. 2003. Changes in bacterial community structure induced by mycorrhizal colonisation in split-root maize. Plant Soil 251:279–289.
-
(2003)
Plant Soil
, vol.251
, pp. 279-289
-
-
Marschner, P.1
Baumann, K.2
-
70
-
-
3843058988
-
Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type
-
Marschner, P., D. Crowley, and C.H. Yang. 2004. Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type. Plant Soil 261:199–208.
-
(2004)
Plant Soil
, vol.261
, pp. 199-208
-
-
Marschner, P.1
Crowley, D.2
Yang, C.H.3
-
71
-
-
0035673349
-
Arbuscular mycorrhizal infection changes the bacterial 16S rDNA community composition in the rhizosphere of maize
-
Marschner, P., D.E. Crowley, and R. Lieberei. 2001. Arbuscular mycorrhizal infection changes the bacterial 16S rDNA community composition in the rhizosphere of maize. Mycorrhiza 11:297–302.
-
(2001)
Mycorrhiza
, vol.11
, pp. 297-302
-
-
Marschner, P.1
Crowley, D.E.2
Lieberei, R.3
-
72
-
-
0346139285
-
Spatial and temporal dynamics of the microbial community structure in the rhizosphere of cluster roots of white lupin (Lupinus albus L.)
-
Marschner, P., G. Neumann, A. Kania, L. Weiskopf, and R. Lieberei. 2002. Spatial and temporal dynamics of the microbial community structure in the rhizosphere of cluster roots of white lupin (Lupinus albus L.). Plant Soil 246:167–174.
-
(2002)
Plant Soil
, vol.246
, pp. 167-174
-
-
Marschner, P.1
Neumann, G.2
Kania, A.3
Weiskopf, L.4
Lieberei, R.5
-
73
-
-
85047683437
-
Changes in populations of rhizosphere bacteria associated with take-all disease of wheat
-
McSpadden Gardener, B.B., and D.M. Weller. 2001. Changes in populations of rhizosphere bacteria associated with take-all disease of wheat. Appl. Environ. Microbiol. 67:4414–4425.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4414-4425
-
-
McSpadden Gardener, B.B.1
Weller, D.M.2
-
74
-
-
0030483312
-
Molecular evidence for the presence of novel actinomycete lineages in a temperate forest soil
-
McVeigh, H.P., J. Munro, and T.M. Embley. 1996. Molecular evidence for the presence of novel actinomycete lineages in a temperate forest soil. J. Ind. Microbiol. Biotechnol. 17:197–204.
-
(1996)
J. Ind. Microbiol. Biotechnol.
, vol.17
, pp. 197-204
-
-
McVeigh, H.P.1
Munro, J.2
Embley, T.M.3
-
75
-
-
0001123036
-
Release of carbon and nitrogen compounds by plant roots and their possible ecological importance
-
Merbach, W., E. Mirus, G. Knof, R. Remus, S. Ruppel, R. Russow, A. Gransee, and J. Schulze. 1999. Release of carbon and nitrogen compounds by plant roots and their possible ecological importance. J. Plant Nutr. Soil Sci. 162:373–383.
-
(1999)
J. Plant Nutr. Soil Sci.
, vol.162
, pp. 373-383
-
-
Merbach, W.1
Mirus, E.2
Knof, G.3
Remus, R.4
Ruppel, S.5
Russow, R.6
Gransee, A.7
Schulze, J.8
-
76
-
-
14644399291
-
Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi
-
Milling, A., K. Smalla, F.X. Maidl, M. Schloter, and J.C. Munch. 2005. Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi. Plant Soil 266:23–39.
-
(2005)
Plant Soil
, vol.266
, pp. 23-39
-
-
Milling, A.1
Smalla, K.2
Maidl, F.X.3
Schloter, M.4
Munch, J.C.5
-
77
-
-
85015523966
-
Methane emission from paddy fields and its mitigation options on a field scale
-
Minamikawa, K., N. Sakai, and K. Yagi. 2006. Methane emission from paddy fields and its mitigation options on a field scale. Microbes Environ. 21:135–147.
-
(2006)
Microbes Environ.
, vol.21
, pp. 135-147
-
-
Minamikawa, K.1
Sakai, N.2
Yagi, K.3
-
78
-
-
2442658186
-
Anaerobic nitrogen-fixing consortia consisting of clostridia isolated from gramineous plants
-
Minamisawa, K., K. Nishioka, T. Miyaki, B. Ye, T. Miyamoto, M. You, A. Saito, M. Saito, W.L. Barraquio, N. Teaumroong, T. Sein, and T. Sato. 2004. Anaerobic nitrogen-fixing consortia consisting of clostridia isolated from gramineous plants. Appl. Environ. Microbiol. 70:3096–3102.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3096-3102
-
-
Minamisawa, K.1
Nishioka, K.2
Miyaki, T.3
Ye, B.4
Miyamoto, T.5
You, M.6
Saito, A.7
Saito, M.8
Barraquio, W.L.9
Teaumroong, N.10
Sein, T.11
Sato, T.12
-
79
-
-
0031424595
-
Fluxes of methane from rice fields and potential for mitigation
-
Neue, H.U. 1997. Fluxes of methane from rice fields and potential for mitigation. Soil Use Manage. 13:258–267.
-
(1997)
Soil Use Manage.
, vol.13
, pp. 258-267
-
-
Neue, H.U.1
-
80
-
-
34447549837
-
Predominant culturable Bacillus species in japanese arable soils and their potential as biocontrol agents
-
Nishijima, T., K. Toyota, and M. Mochizuki. 2005. Predominant culturable Bacillus species in japanese arable soils and their potential as biocontrol agents. Microbes Environ. 20:61–68.
-
(2005)
Microbes Environ.
, vol.20
, pp. 61-68
-
-
Nishijima, T.1
Toyota, K.2
Mochizuki, M.3
-
81
-
-
0033774886
-
Bacterial origin and community composition in the barley phytosphere as a function of habitat and presowing conditions
-
Normander, B. and J.I. Prosser. 2000. Bacterial origin and community composition in the barley phytosphere as a function of habitat and presowing conditions. Appl. Environ. Microbiol. 66:4372–4377.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4372-4377
-
-
Normander, B.1
Prosser, J.I.2
-
82
-
-
32044431649
-
Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques
-
Nunan, N., T.J. Daniell, B.K. Singh, A. Papert, J.W. McNicol, and J.I. Prosser. 2005. Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques. Appl. Environ. Microbiol. 71:6784–6792.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6784-6792
-
-
Nunan, N.1
Daniell, T.J.2
Singh, B.K.3
Papert, A.4
McNicol, J.W.5
Prosser, J.I.6
-
83
-
-
0030982247
-
A molecular view of microbial diversity and the biosphere
-
Pace, N.R. 1997. A molecular view of microbial diversity and the biosphere. Science 276:734–740.
-
(1997)
Science
, vol.276
, pp. 734-740
-
-
Pace, N.R.1
-
85
-
-
18944379239
-
Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microorganisms
-
Rangel-Castro, J.I., K. Killham, N. Ostle, G.W. Nicol, I.C. Anderson, C.M. Scrimgeour, P. Ineson, A. Meharg, and J.I. Prosser. 2005. Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microorganisms. Environ. Microbiol. 7:828–838.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 828-838
-
-
Rangel-Castro, J.I.1
Killham, K.2
Ostle, N.3
Nicol, G.W.4
Anderson, I.C.5
Scrimgeour, C.M.6
Ineson, P.7
Meharg, A.8
Prosser, J.I.9
-
86
-
-
33645961598
-
Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure
-
Rasche, F., V. Hödl, C. Poll, E. Kandeler, M.H. Gerzabek, J.D. van Elsas, and A. Sessitsch. 2006. Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure. FEMS Microbiol. Ecol. 56:219–235.
-
(2006)
FEMS Microbiol. Ecol.
, vol.56
, pp. 219-235
-
-
Rasche, F.1
Hödl, V.2
Poll, C.3
Kandeler, E.4
Gerzabek, M.H.5
van Elsas, J.D.6
Sessitsch, A.7
-
87
-
-
0348014402
-
Endophytic nifH gene diversity in African sweet potato
-
Reiter, B., H. Burgmann, K. Burg, and A. Sessitsch. 2003. Endophytic nifH gene diversity in African sweet potato. Can. J. Microbiol. 49:549–555.
-
(2003)
Can. J. Microbiol.
, vol.49
, pp. 549-555
-
-
Reiter, B.1
Burgmann, H.2
Burg, K.3
Sessitsch, A.4
-
88
-
-
0036245014
-
Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica
-
Reiter, B., U. Pfeifer, H. Schwab, and A. Sessitsch. 2002. Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica. Appl. Environ. Microbiol. 68:2261–2268.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2261-2268
-
-
Reiter, B.1
Pfeifer, U.2
Schwab, H.3
Sessitsch, A.4
-
89
-
-
33744468520
-
Bacterial endophytes of the wildflower Crocus albiflorus analyzed by characterization of isolates and by a cultivation-independent approach
-
Reiter, B., and A. Sessitsch. 2006. Bacterial endophytes of the wildflower Crocus albiflorus analyzed by characterization of isolates and by a cultivation-independent approach. Can. J. Microbiol. 52:140–149.
-
(2006)
Can. J. Microbiol.
, vol.52
, pp. 140-149
-
-
Reiter, B.1
Sessitsch, A.2
-
90
-
-
0344287130
-
Endophytic Pseudomonas spp. populations of pathogen-infected potato plants analysed by 16S rDNA-and 16S rRNA-based denaturating gradient gel electrophoresis
-
Reiter, B., N. Wermbter, S. Gyamfi, H. Schwab, and A. Sessitsch. 2003. Endophytic Pseudomonas spp. populations of pathogen-infected potato plants analysed by 16S rDNA-and 16S rRNA-based denaturating gradient gel electrophoresis. Plant Soil 257:397–405.
-
(2003)
Plant Soil
, vol.257
, pp. 397-405
-
-
Reiter, B.1
Wermbter, N.2
Gyamfi, S.3
Schwab, H.4
Sessitsch, A.5
-
91
-
-
0031769241
-
Effects of bacterial antibiotic production on rhizosphere microbial communities from a culture-independent perspective
-
Robleto, E.A., J. Borneman, and E.W. Triplett. 1998. Effects of bacterial antibiotic production on rhizosphere microbial communities from a culture-independent perspective. Appl. Environ. Microbiol. 64:5020–5022.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 5020-5022
-
-
Robleto, E.A.1
Borneman, J.2
Triplett, E.W.3
-
92
-
-
0036208363
-
Molecular method to assess the diversity of Burkholderia species in environmental samples
-
Salles, J.F., F.A. De Souza, and J.D. van Elsas. 2002. Molecular method to assess the diversity of Burkholderia species in environmental samples. Appl. Environ. Microbiol. 68:1595–1603.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 1595-1603
-
-
Salles, J.F.1
De Souza, F.A.2
van Elsas, J.D.3
-
93
-
-
0002675062
-
The increasing interest in ‘minor pathogens'
-
In B. Shippers, and W. Gams (eds.) Academic Press, London
-
Salt, G.A. 1979. The increasing interest in ‘minor pathogens', pp. 289–312. In B. Shippers, and W. Gams (eds.), Soil-borne plant pathogens. Academic Press, London.
-
(1979)
Soil-borne plant pathogens.
, pp. 289-312
-
-
Salt, G.A.1
-
94
-
-
0037246188
-
Genetic profiling of noncultivated bacteria from the rhizospheres of sugar beet (Beta vulgaris) reveal field and annual variability but no effect of a transgenic herbicide resistance
-
Schmalenberger, A., and C.C. Tebbe. 2003. Genetic profiling of noncultivated bacteria from the rhizospheres of sugar beet (Beta vulgaris) reveal field and annual variability but no effect of a transgenic herbicide resistance. Can. J. Microbiol. 49:1–8.
-
(2003)
Can. J. Microbiol.
, vol.49
, pp. 1-8
-
-
Schmalenberger, A.1
Tebbe, C.C.2
-
95
-
-
0033861401
-
Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a nontarget plant (Chenopodium album): linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria
-
Schwieger, F., and C.C. Tebbe. 2000. Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a nontarget plant (Chenopodium album): linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria. Appl. Environ. Microbiol. 66:3556–3565.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3556-3565
-
-
Schwieger, F.1
Tebbe, C.C.2
-
96
-
-
1642376427
-
Impact of agricultural practices on the Zea mays L. endophytic community
-
Seghers, D., L. Wittebolle, E.M. Top, W. Verstraete, and S.D. Siciliano. 2004. Impact of agricultural practices on the Zea mays L. endophytic community. Appl. Environ. Microbiol. 70:1475–1482.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1475-1482
-
-
Seghers, D.1
Wittebolle, L.2
Top, E.M.3
Verstraete, W.4
Siciliano, S.D.5
-
97
-
-
0036191156
-
Cultivation-independent population analysis of bacterial endophytes in three potato varieties based on eubacterial and Actinomycetes specific PCR of 16S rRNA genes
-
Sessitsch, A., B. Reiter, U. Pfeifer, and E. Wilhelm. 2002. Cultivation-independent population analysis of bacterial endophytes in three potato varieties based on eubacterial and Actinomycetes specific PCR of 16S rRNA genes. FEMS Microbiol. Ecol. 39:23–32.
-
(2002)
FEMS Microbiol. Ecol.
, vol.39
, pp. 23-32
-
-
Sessitsch, A.1
Reiter, B.2
Pfeifer, U.3
Wilhelm, E.4
-
98
-
-
17444413782
-
Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes
-
Sharma, S., M.K. Aneja, J. Mayer, J.C. Munch, and M. Schloter. 2005. Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes. Appl. Environ. Microbiol. 71:2001–2007.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2001-2007
-
-
Sharma, S.1
Aneja, M.K.2
Mayer, J.3
Munch, J.C.4
Schloter, M.5
-
99
-
-
7644229921
-
RNA fingerprinting of microbial community in the rhizosphere soil of grain legumes
-
Sharma, S., M.K. Aneja, J. Mayer, M. Schloter, and J.C. Munch. 2004. RNA fingerprinting of microbial community in the rhizosphere soil of grain legumes. FEMS Microbiol. Lett. 240:181–186.
-
(2004)
FEMS Microbiol. Lett.
, vol.240
, pp. 181-186
-
-
Sharma, S.1
Aneja, M.K.2
Mayer, J.3
Schloter, M.4
Munch, J.C.5
-
100
-
-
79958211780
-
Promotion of growth and yield in cucumber by zoysiagrass rhizosphere fungi
-
Shivanna, M.B., M.S. Meera, M. Kubota, and M. Hyakumachi. 2005. Promotion of growth and yield in cucumber by zoysiagrass rhizosphere fungi. Microbes Environ. 20:34–40.
-
(2005)
Microbes Environ.
, vol.20
, pp. 34-40
-
-
Shivanna, M.B.1
Meera, M.S.2
Kubota, M.3
Hyakumachi, M.4
-
101
-
-
1642267395
-
Comparison of crenarchaeal consortia inhabiting the rhizosphere of diverse terrestrial plants with those in bulk soil in native environments
-
Sliwinski, M.K., and R.M. Goodman. 2004. Comparison of crenarchaeal consortia inhabiting the rhizosphere of diverse terrestrial plants with those in bulk soil in native environments. Appl. Environ. Microbiol. 70:1821–1826.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1821-1826
-
-
Sliwinski, M.K.1
Goodman, R.M.2
-
102
-
-
0035487320
-
Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed
-
Smalla, K., G. Wieland, A. Buchner, A. Zock, J. Parzy, S. Kaiser, N. Roskot, H. Heuer, and G. Berg 2001. Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl. Environ. Microbiol. 67:4742–4751.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4742-4751
-
-
Smalla, K.1
Wieland, G.2
Buchner, A.3
Zock, A.4
Parzy, J.5
Kaiser, S.6
Roskot, N.7
Heuer, H.8
Berg, G.9
-
103
-
-
0032719795
-
Host variation for interactions with beneficial plant-associated microbes
-
Smith, K.P. and R.M. Goodman. 1999. Host variation for interactions with beneficial plant-associated microbes. Annu. Rev. Phytopathol. 37:473–491.
-
(1999)
Annu. Rev. Phytopathol.
, vol.37
, pp. 473-491
-
-
Smith, K.P.1
Goodman, R.M.2
-
104
-
-
27444438277
-
Bacterial diversity in the rhizosphere of Proteaceae species
-
Stafford, W.H., G.C. Baker, S.A. Brown, S.G. Burton, and D.A. Cowan. 2005. Bacterial diversity in the rhizosphere of Proteaceae species. Environ. Microbiol. 7:1755–1768.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 1755-1768
-
-
Stafford, W.H.1
Baker, G.C.2
Brown, S.A.3
Burton, S.G.4
Cowan, D.A.5
-
105
-
-
0141788244
-
Effect of N-fertilization, plant genotype and environmental conditions on nifH gene pools in roots of rice
-
Tan, Z., T. Hurek, and B. Reinhold-Hurek. 2003. Effect of N-fertilization, plant genotype and environmental conditions on nifH gene pools in roots of rice. Environ. Microbiol. 5:1009–1015.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 1009-1015
-
-
Tan, Z.1
Hurek, T.2
Reinhold-Hurek, B.3
-
106
-
-
14644402504
-
Risk assessment for engineered bacteria used in biocontrol of fungal disease in agricultural crops
-
Timms-Wilson, T.M., K. Kilshaw, and M.J. Bailey. 2005. Risk assessment for engineered bacteria used in biocontrol of fungal disease in agricultural crops. Plant Soil 266:57–67.
-
(2005)
Plant Soil
, vol.266
, pp. 57-67
-
-
Timms-Wilson, T.M.1
Kilshaw, K.2
Bailey, M.J.3
-
107
-
-
0029996973
-
Dynamics of phosphorus translocation in intact ectomyorrhizal systems: non-destructive monitoring using a B-scanner
-
Timonen, S., R.D. Finley, S. Olsson, and B. Soderstrom. 1996. Dynamics of phosphorus translocation in intact ectomyorrhizal systems: non-destructive monitoring using a B-scanner. FEMS Microbiol. Ecol. 19:171–180.
-
(1996)
FEMS Microbiol. Ecol.
, vol.19
, pp. 171-180
-
-
Timonen, S.1
Finley, R.D.2
Olsson, S.3
Soderstrom, B.4
-
109
-
-
0038158278
-
Progress in selected areas of rhizosphere on P acquisition
-
Trulove, S.N., M.J. Hedley, G.J.D. Kirk, N.S. Bolan, and P. Loganathan. 2003. Progress in selected areas of rhizosphere on P acquisition. Aust. J. Soil Res. 41:471–499.
-
(2003)
Aust. J. Soil Res.
, vol.41
, pp. 471-499
-
-
Trulove, S.N.1
Hedley, M.J.2
Kirk, G.J.D.3
Bolan, N.S.4
Loganathan, P.5
-
110
-
-
0036731750
-
Effect of a Sinorhizobium meliloti strain with a mdified putA gene on the rhizosphere microbial community of alfalfa
-
van Dillewijn, P., P.J. Villadas, and N. Toro. 2002. Effect of a Sinorhizobium meliloti strain with a mdified putA gene on the rhizosphere microbial community of alfalfa. Appl. Environ. Microbiol. 68:4201–4208.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4201-4208
-
-
van Dillewijn, P.1
Villadas, P.J.2
Toro, N.3
-
111
-
-
27444438675
-
Ascomycete communities in the rhizosphere of field-grown wheat are not affected by introductions of genetically modified Pseudomonas putida WCS358r
-
Viebahn, M., R. Doornbos, K. Wernars, L.C. van Loon, E. Smit, and P.A.H.M. Bakker. 2005. Ascomycete communities in the rhizosphere of field-grown wheat are not affected by introductions of genetically modified Pseudomonas putida WCS358r. Environ. Microbiol. 7:1775–1785.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 1775-1785
-
-
Viebahn, M.1
Doornbos, R.2
Wernars, K.3
van Loon, L.C.4
Smit, E.5
Bakker, P.A.H.M.6
-
112
-
-
20444377291
-
Assessment of differences in ascomycete communities in the rhizosphere of field-grown wheat and potato
-
Viebahn, M., C. Veenman, K. Wernars, L.C. van Loon, E. Smit, and P.A.H.M. Bakker. 2005. Assessment of differences in ascomycete communities in the rhizosphere of field-grown wheat and potato. FEMS Microbiol. Ecol. 53:245–253.
-
(2005)
FEMS Microbiol. Ecol.
, vol.53
, pp. 245-253
-
-
Viebahn, M.1
Veenman, C.2
Wernars, K.3
van Loon, L.C.4
Smit, E.5
Bakker, P.A.H.M.6
-
113
-
-
0028091275
-
The regulation of ribosomal RNA synthesis and bacterial cell growth
-
Wagner, R. 1994. The regulation of ribosomal RNA synthesis and bacterial cell growth. Arch. Microbiol. 161:100–109.
-
(1994)
Arch. Microbiol.
, vol.161
, pp. 100-109
-
-
Wagner, R.1
-
114
-
-
0035654216
-
Variation of microbial communities in soil, rhizosphere, and rhizoplane in response to crop species, soil type, and crop development
-
Wieland, G., R. Neumann, and H. Backhaus. 2001. Variation of microbial communities in soil, rhizosphere, and rhizoplane in response to crop species, soil type, and crop development. Appl. Environ. Microbiol. 67:5849–5854.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5849-5854
-
-
Wieland, G.1
Neumann, R.2
Backhaus, H.3
-
115
-
-
0033987792
-
Rhizosphere microbial community structure in relation to root location and plant iron nutritional status
-
Yang, C.H. and D.E. Crowley. 2000. Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl. Environ. Microbiol. 66:345–351.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 345-351
-
-
Yang, C.H.1
Crowley, D.E.2
-
116
-
-
0035957371
-
Microbial phyllosphere populations are more complex than previously realized
-
Yang, C.H., D.E. Crowley, J. Borneman, and N.T. Keen. 2001. Microbial phyllosphere populations are more complex than previously realized. Proc. Natl. Acad. Sci. USA 98:3889–3894.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 3889-3894
-
-
Yang, C.H.1
Crowley, D.E.2
Borneman, J.3
Keen, N.T.4
-
117
-
-
0034022195
-
The role of chitinase production by Stenotrophomonas maltophilia strain C3 in biological control of Bipolaris sorokiniana
-
Zhang, Z. and G.Y. Yuen. 2000. The role of chitinase production by Stenotrophomonas maltophilia strain C3 in biological control of Bipolaris sorokiniana. Phytopathology 90:384–389.
-
(2000)
Phytopathology
, vol.90
, pp. 384-389
-
-
Zhang, Z.1
Yuen, G.Y.2
|