Community analysis of arbuscular mycorrhizal fungi associated with Ammophila arenaria in Dutch coastal sand dunes

Molecular Ecology

Volumn 11, Issue 3, 2002, Pages 571-581

  Kowalchuk, George A ^a   De Souza, Francisco A ^a,b   Van Veen, Johannes A ^a  

^a NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

^b EMBRAPA AGROBIOLOGIA   (Brazil)

Author keywords

AMF; Glomeromycota; Glomus; PCR DGGE; Scutellospora; Zygomycetes

Indexed keywords

AMMOPHILA ARENARIA; BACTERIA (MICROORGANISMS); FUNGI; GLOMEROMYCOTA; GLOMUS; MYXOGASTRIA; NEMATODA; SCUTELLOSPORA; ZYGOMYCETES;

FUNGAL DNA; RIBOSOME DNA; SILICON DIOXIDE;

ARTICLE; DNA SEQUENCE; ECOSYSTEM; ELECTROPHORESIS; FUNGUS; FUNGUS SPORE; GENETICS; METHODOLOGY; MICROBIOLOGY; NETHERLANDS; PHYSIOLOGY; PLANT ROOT; POACEAE; POLYMERASE CHAIN REACTION;

DNA, FUNGAL; DNA, RIBOSOMAL; ECOSYSTEM; ELECTROPHORESIS; FUNGI; NETHERLANDS; PLANT ROOTS; POACEAE; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SILICON DIOXIDE; SOIL MICROBIOLOGY; SPORES, FUNGAL;

EID: 0036006372     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.0962-1083.2001.01457.x     Document Type: Article

References (59)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. Phylogenetic identification and in situ detection of individual cells without cultivation
3. Molecular analsyis of Gigaspora (Glomales, Gigasporaceae)
4. Ribosomal small sub-unit sequence variation within spores of an arbuscular mycorrhizal fungus, Scutellospora sp.
5. Diversity of fungal symbionts in arbuscular mycorrhias from a natural community
6. The role of plant-parasitic nematodes and soil-borne fungi in the decline of Ammophila arenaria (L.) link
7. Analysis of nematodes and soil-borne fungi from Ammophila arenaria (marram grass) in Dutch coastal foredunes by multivariate techniques
8. Effects of sand deposition on the interactions between Ammophila arenaria, plant-parasitic nematodes and pathogenic fungi
9. Detection of an arbuscular mycorrhizal fungus in roots of different plant species with the PCR
10. Mycelium of arbuscular mycorrhizal fungi (AMF) from different genera: Form, function and detection
11. Biodiversity of arbuscular mycorrhizal fungi in agroecosystems
12. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
13. Phycomycetous mycorrhizal organisms collected by open pot culture methods
14. Biodiversity in arbuscular mycorrhizal fungi
15. An evaluation of techniques for measuring vesicular-arbuscular mycorrhizal infection in roots
16. Ploughing up the wood-wide web?
17. Molecular diversity of arbuscular mycorrhizal fungi colonising Hyacinthoides non-scripta (bluebell) in a seminatural woodland
18. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
19. Functioning of mycorrhizal associations along the mutualism-parasitism continuum
20. Functional complementarily in the arbuscular mycorrhizal symbiosis
21. A modified procedure for staining roots to detect VA mycorrhizas
22. Ecological studies of vesicular-arbuscular mycorrhae in a barrier sand dune
23. A convenient, permanent slide mounting medium
24. New perspectives towards analyzing fungal communities in terrestrial ecosystems
25. Detection and characterisation of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18S rDNA
26. Analysis of β-proteobacteria ammonia-oxidizing bacteria in coastal sand dunes using denaturing gradient gel electrophoresis and sequencing of PCR amplified 16S rDNA fragments
27. Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed culture of strict barophilic bacteria
28. The arbuscular mycorrhizal fungi of hyacinthoides non-scripta - I. Diversity of fungal taxa
29. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes for 16S rRNA
30. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis in microbial ecology
31. Arbuscular mycorrhizas protect an annual grass from root pathogenic fungi in the field
32. High levels of variation in ribosomal DNA sequences within and among spores of a natural population of the arbuscular mycorrhizal fungal Acaulospora colossica
33. Specific PCR primers to identify arbuscular mycorrhizal fungi within colonized roots
34. Ancestral lineages of arbuscular mycorrhizal fungi
35. Restriction analysis of PCR-amplified internal transcribed spacers of ribosomal DNA as a tool for species identification in different genera of the order Glomales
36. Identification of ribosomal DNA polymorphisms among and within spores of the Glomales: Application to studies on the genetic diversity of arbuscular mycorrhizal fungal communities
37. Analysis of partial Glomales SSU rRNA gene sequences: Implications for primer design and phylogeny
38. A new fungal phylum, the Glomeromycota: Phylogeny and evolution
39. Evidence of a mycorrhizal mechanism for the adaptation of Andropogon gerardii (Poaceae) to high- and low-nutrient prairies
40. Origin and diversification of endomycorrhizal fungi and coincidence with vascular land plants
41. Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular mycorrhizal fungal communities
42. Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis
43. Spatial differences in acquisition of soil phosphate between two arbuscular mycorrhizal fungi in symbiosis with Medicago truncatula
44. Banco ativo de Glomales da embrapa agrobiologia: Catalogação e introdução de novos isolados desde 1995
45. Ontogeny of Glomus clarum in RT transformed roots
46. Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences
47. Fate of a mixture of five metal resistant bacteria introduced into pristine and heavy-metal-contaminated soil microcosms assessed by DGGE
48. Ribotyping of microbial communities
49. Clonal growth traits of two Prunella species are determined by co-occurring arbuscular mycorrhizal fungi from a calcareous grassland
50. Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA
51. Different arbuscular mycorrhizal fungal species are potential determinants of plant community structure
52. Mycorrhizal fungal diversity determine plant biodiversity, ecosystem variability and production
53. Large-scale establishment of Ammophila arenaria and quantitative assessment by remote sensing
54. Plant-specific soil-borne diseases contribute to succession in foredune vegetation
55. Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA-targeted nested PCR
56. Systamics and taxonomy of the arbuscular endomycorrhizal fungi (Glomales) - A possible way forward
57. The frequency of formation of chimeric molecules as a consequence of PCR coampification of 16S rRNA genes from mixed bacterial genomes
58. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics