메뉴 건너뛰기




Volumn 66, Issue 7, 2000, Pages 2943-2950

Assessment of microbial diversity in four Southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 0033941482     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.66.7.2943-2950.2000     Document Type: Article
Times cited : (348)

References (29)
  • 1
    • 0027995162 scopus 로고
    • A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences
    • Avaniss-Aghajani, E., K. Jones, D. Chapman, and C. Brunk. 1994. A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences. BioTechniques 17:144-149.
    • (1994) BioTechniques , vol.17 , pp. 144-149
    • Avaniss-Aghajani, E.1    Jones, K.2    Chapman, D.3    Brunk, C.4
  • 2
    • 0032963409 scopus 로고    scopus 로고
    • Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
    • Barns, S. M., S. L. Takala, and C. R. Kuske. 1999. Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl. Environ. Microbiol. 65:1731-1737.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1731-1737
    • Barns, S.M.1    Takala, S.L.2    Kuske, C.R.3
  • 3
    • 0030025916 scopus 로고    scopus 로고
    • A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences
    • Brunk, C. F., E. Avaniss-Aghajani, and C. A. Brunk. 1996. A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences. Appl. Environ. Microbiol. 62:872-879.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 872-879
    • Brunk, C.F.1    Avaniss-Aghajani, E.2    Brunk, C.A.3
  • 5
    • 0032704282 scopus 로고    scopus 로고
    • Structure and function of the methanogenic archaeal community in stable cellulose-degrading enrichment cultures at two different temperatures (15° and 30°C)
    • Chin, K. J., T. Lukow, S. Stubner, and R. Conrad. 1999. Structure and function of the methanogenic archaeal community in stable cellulose-degrading enrichment cultures at two different temperatures (15° and 30°C). FEMS Microbiol. Ecol. 30:313-326.
    • (1999) FEMS Microbiol. Ecol. , vol.30 , pp. 313-326
    • Chin, K.J.1    Lukow, T.2    Stubner, S.3    Conrad, R.4
  • 6
    • 0031882598 scopus 로고    scopus 로고
    • Terminal Restriction Fragment Patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities
    • Clement, B. G., L. E. Kehl, K. L. DeBord, and C. L. Kitts. 1998. Terminal Restriction Fragment Patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities. J. Microbiol. Methods 31: 135-142.
    • (1998) J. Microbiol. Methods , vol.31 , pp. 135-142
    • Clement, B.G.1    Kehl, L.E.2    DeBord, K.L.3    Kitts, C.L.4
  • 7
    • 0030617431 scopus 로고    scopus 로고
    • Increased moth herbivory associated with environmental stress of pinyon pine at local and regional levels
    • Cobb, N. S., S. Mopper, C. A. Gehring, M. Caouette, K. M. Christensen, and T. G. Whitham. 1997. Increased moth herbivory associated with environmental stress of pinyon pine at local and regional levels. Oecologia 109:389-397.
    • (1997) Oecologia , vol.109 , pp. 389-397
    • Cobb, N.S.1    Mopper, S.2    Gehring, C.A.3    Caouette, M.4    Christensen, K.M.5    Whitham, T.G.6
  • 9
    • 0032914126 scopus 로고    scopus 로고
    • Levels of bacterial community diversity in four arid soils compared by cullivation and 16S rRNA gene cloning
    • Dunbar, J., S. Takala, S. M. Barns, J. A. Davis, and C. R. Kuske. 1999. Levels of bacterial community diversity in four arid soils compared by cullivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65:1662-1669.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1662-1669
    • Dunbar, J.1    Takala, S.2    Barns, S.M.3    Davis, J.A.4    Kuske, C.R.5
  • 11
    • 0031778612 scopus 로고    scopus 로고
    • PAGE analysis of the heteroduplexes formed between PCR-amplified 16S rRNA genes: Estimation of sequence similarity and rDNA complexity
    • Espejo, R. T., C. G. Feijoo, J. Romero, and M. Vasquez. 1998. PAGE analysis of the heteroduplexes formed between PCR-amplified 16S rRNA genes: estimation of sequence similarity and rDNA complexity. Microbiology 144: 1011-1617.
    • (1998) Microbiology , vol.144 , pp. 1011-1617
    • Espejo, R.T.1    Feijoo, C.G.2    Romero, J.3    Vasquez, M.4
  • 12
    • 0030063913 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
    • Ferris, M. J., G. Muyzer, and D. M. Ward. 1996. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62:340-346.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 340-346
    • Ferris, M.J.1    Muyzer, G.2    Ward, D.M.3
  • 13
    • 85040854194 scopus 로고
    • University of Arizona Press, Tucson
    • Hendricks, D. M. 1985. Arizona soils. University of Arizona Press, Tucson.
    • (1985) Arizona Soils
    • Hendricks, D.M.1
  • 14
    • 0030739128 scopus 로고    scopus 로고
    • Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
    • Heuer, H., M. Krsek, P. Baker, K. Smalla, and E. M. H. Wellington. 1997. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63:3233-3241.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3233-3241
    • Heuer, H.1    Krsek, M.2    Baker, P.3    Smalla, K.4    Wellington, E.M.H.5
  • 15
    • 0000752502 scopus 로고
    • The nonconcept of species diversity: A critique and alternative parameters
    • Hurlbert, S. H. 1971. The nonconcept of species diversity: a critique and alternative parameters. Ecology 52:577-586.
    • (1971) Ecology , vol.52 , pp. 577-586
    • Hurlbert, S.H.1
  • 16
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
    • Kowalchuk, G. A., J. R. Stephen, W. D. Boer, J. I. Presser, T. M. Embley, and J. W. Woldendorp. 1997. Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ. Microbiol. 63:1489-1497.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    Boer, W.D.3    Presser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 17
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske, C. R., S. M. Barns, and J. D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614-3621.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 18
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63: 4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 19
    • 0002542478 scopus 로고
    • Information theory in ecology
    • Margalef, R. 1958. Information theory in ecology. General Systems 3:36-71.
    • (1958) General Systems , vol.3 , pp. 36-71
    • Margalef, R.1
  • 20
    • 0032812081 scopus 로고    scopus 로고
    • Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
    • Moeseneder, M. M., J. M. Arrieta, G. Muyzer, C. Winter, and G. J. Herndl. 1999. Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 65: 3518-3525.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3518-3525
    • Moeseneder, M.M.1    Arrieta, J.M.2    Muyzer, G.3    Winter, C.4    Herndl, G.J.5
  • 21
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., E. C. D. Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    Waal, E.C.D.2    Uitterlinden, A.G.3
  • 22
    • 2542509415 scopus 로고    scopus 로고
    • Quantifying microbial diversity: Morphotypes, 16S rRNA genes, and carotenoids of oxygenic phototrophs in microbial mats
    • Nübel, U., F. Gracia-Pichel, M. Kühl, and G. Muyzer. 1999. Quantifying microbial diversity: morphotypes, 16S rRNA genes, and carotenoids of oxygenic phototrophs in microbial mats. Appl. Environ. Microbiol. 65:422-430.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 422-430
    • Nübel, U.1    Gracia-Pichel, F.2    Kühl, M.3    Muyzer, G.4
  • 23
    • 0030805150 scopus 로고    scopus 로고
    • Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
    • Ovreas, L., L. Forney, F. L. Daae, and V. Torsvik. 1997. Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl. Environ. Microbiol. 63:3367-3373.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3367-3373
    • Ovreas, L.1    Forney, L.2    Daae, F.L.3    Torsvik, V.4
  • 24
    • 0026555152 scopus 로고
    • PCR amplification of long DNA fragments
    • Ponce, M. R., and J. L. Michol. 1992. PCR amplification of long DNA fragments. Nucleic Acids Res. 20:623.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 623
    • Ponce, M.R.1    Michol, J.L.2
  • 26
    • 0010446496 scopus 로고
    • Use of rarefaction and related methods in ecology
    • K. L. Dickson, J. J. Cairns, and R. J. Livingston (ed.), American Society for Testing and Materials, West Conshohocken, Pa.
    • Simberloff, D. 1978. Use of rarefaction and related methods in ecology, p. 150-165. In K. L. Dickson, J. J. Cairns, and R. J. Livingston (ed.), Biological data in water pollution assessment: quantitative and statistical analyses. American Society for Testing and Materials, West Conshohocken, Pa.
    • (1978) Biological Data in Water Pollution Assessment: Quantitative and Statistical Analyses , pp. 150-165
    • Simberloff, D.1
  • 27
    • 33344464667 scopus 로고
    • Measurement of diversity
    • Simpson, E. H. 1949. Measurement of diversity. Nature 163:688.
    • (1949) Nature , vol.163 , pp. 688
    • Simpson, E.H.1
  • 28
    • 0031465029 scopus 로고    scopus 로고
    • Biodiversity within hot spring microbial mat communities: Molecular monitoring of enrichment cultures
    • Ward, D. M., C. M. Santegoeds, S. C. Nold, N. B. Ramsing, M. J. Ferris, and M. M. Bateson. 1997. Biodiversity within hot spring microbial mat communities: molecular monitoring of enrichment cultures. Antonie Leeuwenhoek 71:143-150.
    • (1997) Antonie Leeuwenhoek , vol.71 , pp. 143-150
    • Ward, D.M.1    Santegoeds, C.M.2    Nold, S.C.3    Ramsing, N.B.4    Ferris, M.J.5    Bateson, M.M.6
  • 29
    • 0025045135 scopus 로고
    • Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction
    • Wilson, K. H., R. B. Blitchington, and R. C. Green. 1990. Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. J. Clin. Microbiol. 28:1942-1946.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 1942-1946
    • Wilson, K.H.1    Blitchington, R.B.2    Green, R.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.