Ascomycete communities in the rhizosphere of field-grown wheat are not affected by introductions of genetically modified Pseudomonas putida WCS358r

Environmental Microbiology

Volumn 7, Issue 11, 2005, Pages 1775-1785

  Viebahn, Mareike ^a   Doornbos, Rogier ^b   Wernars, Karel ^b   Van Loon, Leendert C ^a   Smit, Eric ^b   Bakker, Peter A H M ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

1 PHENAZINECARBOXYLIC ACID; 1-PHENAZINECARBOXYLIC ACID; 2,4 DIACETYLPHLOROGLUCINOL; 2,4-DIACETYLPHLOROGLUCINOL; DRUG DERIVATIVE; PHENAZINE DERIVATIVE; PHLOROGLUCINOL; PRIMER DNA; RIBOSOMAL SPACER DNA;

ARTICLE; ASCOMYCETES; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA FINGERPRINTING; DNA SEQUENCE; DRUG EFFECT; ELECTROPHORESIS; GENETICS; METABOLISM; MICROBIOLOGY; NETHERLANDS; PLANT ROOT; PSEUDOMONAS PUTIDA; SPECIES DIFFERENCE; TRANSGENIC ORGANISM; WHEAT;

ASCOMYCOTA; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA PRIMERS; DNA, RIBOSOMAL SPACER; ELECTROPHORESIS; NETHERLANDS; ORGANISMS, GENETICALLY MODIFIED; PHENAZINES; PHLOROGLUCINOL; PLANT ROOTS; PSEUDOMONAS PUTIDA; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY; TRITICUM;

ASCOMYCOTA; FUSARIUM; MICRODOCHIUM; PSEUDOMONAS PUTIDA; SOLANUM TUBEROSUM; TRITICUM AESTIVUM;

EID: 27444438675     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2005.00783.x     Document Type: Article

References (42)

1. Agrios, G.N. (1997) Plant Pathology, 4th edn. San Diego, CA, USA: Academic Press.
2. Altschul, S., Madden, T., Schaffer, A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid Res 25: 3389-3402.
3. Anderson, I.C., Campbell, C.D., and Prosser, J.I. (2003) Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environ Microbiol 5: 36-47.
4. Bakker, P.A.H.M., van Peer, R., and Schippers, B. (1991) Suppression of soil-borne plant pathogens by fluorescent pseudomonads: mechanisms and prospects. In Biotic Interactions and Soil-Borne Diseases. Proceedings of the First Conference of the European Foundation for Plant Pathology. Beemster, A.B.R., Bollen, G.J., Gerlagh, M., Ruissen, M.A., Schippers, B., and Tempel, A. (eds). Amsterdam, the Netherlands: Elsevier Science Publishers B.V., pp. 217-230.
5. Bakker, P.A.H.M., Glandorf, D.C.M., Viebahn, M., Ouwens, T.W.M., Smit, E., Leeflang, P., et al. (2002) Effects of Pseudomonas putida modified to produce phenazine-1-carboxylic acid and 2,4-diacetylphloroglucinol on the microflora of field grown wheat. Antonie Van Leeuwenhoek 81: 617-624.
6. Bangera, M.G., and Thomashow, L.S. (1996) Characterization of a genomic locus required for synthesis of the antibiotic 2,4-diacetylphloroglucinol by the biological control agent Pseudomonas fluorescens Q2-87. Mol Plant Microbe Interact 9: 83-90.
7. Bangera, M.G., and Thomashow, L.S. (1999) Identification and characterization of a gene cluster for synthesis of the polyketide antibiotic 2,4-Diacetylphloroglucinol from Pseudomonas fluorescens Q2-87. J Bacteriol 181: 3155-3163.
8. Cook, R.J. (1992) Wheat root health management and environmental concern. Can J Plant Pathol 14: 76-85.
9. Cook, R.J., Bruckart, W.L., Coulson, J.R., Goettel, M.S., Humber, R.A., Lumsden, R.D., et al. (1996) Safety of microorganisms intended for pest and plant disease control: a framework for scientific evaluation. Biol Control 7: 333-351.
10. De Boer, M., Born, P., Kindt, F., Keurentjes, J.J.B., van der Sluis, I., van Loon, L.C., and Bakker, P.A.H.M. (2003) Control of Fusarium wilt of radish by combining Pseudomonas putida strains that have different disease-suppressive mechanisms. Phytopathology 93: 626-632.
11. Duijff, B.J., Bakker, P.A.H.M., and Schippers, B. (1994) Suppression of Fusarium wilt of carnation by Peudomonas putida WCS358 at different levels of disease incidence and iron availability. Biocontrol Sci Technol 4: 279-288.
12. Geels, F.P., and Schippers, B. (1983) Reduction of yield depression in high frequency potato cropping soil after seed tuber treatments with antagonstic fluorescent Pseudomonas spp. Phytopathol Z 108: 207-214.
13. Glandorf, D.C.M., Verheggen, P., Jansen, T., Jorritsma, J.-W., Smit, E., Leeflang, P., et al. (2001) Effect of genetically modified Pseudomonas putida WCS358r on the fungal rhizosphere microflora of field-grown wheat. Appl Environ Microbiol 67: 3371-3378.
14. Herrero, M., De Lorenzo, V., and Timmis, K.N. (1990) Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 172: 6557.
15. Higgins, C.F. (1992) ABC transporters: from microorganisms to man. Ann Rev Cell Biol 8: 67-113.
16. Huang, Z., Bonsall, R.F., Mavrodi, D.V., Weller, D.M., and Thomashow, L.S. (2004) Transformation of Pseudomonas fluorescens with genes for biosynthesis of phenazine-1-carboxylic acid improves biocontrol of rhizoctonia root rot and in situ antibiotic production. FEMS Microbiol Ecol 49: 243-251.
17. Kent, A.D., and Triplett, E.W. (2002) Microbial communities and their interactions in soil and rhizosphere. Annu Rev Microbiol 56: 211-236.
18. King, E.O., Ward, M.K., and Raney, D.E. (1954) Two simple media for the demonstration of pyocyanin and fluorescin. J Lab Clin Med 44: 301-307.
19. Krebs, C.J. (1989) Ecological Methods. New York, USA: Harper & Row.
20. Larena, I., Salazar, O., Gonzalez, V., Julian, M.C., and Rubio, V. (1999) Design of a primer for ribosomal DNA internal transcribed spacer with enhanced specificity for ascomycetes. J Biotech 75: 187-194.
21. Leeflang, P., Smit, E., Glandorf, D.C.M., van Hannen, E.J., and Wernars, K. (2002) Effects of Pseudomonas putida WCS358r and its genetically modified phenazine producing derivative on the Fusarium population in a field experiment, as determined by 18S rDNA analysis. Soil Biol Biochem 34: 1021-1025.
22. Lemanceau, P., Corberand, T., Gardan, L., Latour, X., Laguerre, G., Boeufgras, J., and Alabouvette, C. (1995) Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.), on the diversity of soilborne populations of fluorescent pseudomonads. App Environ Microbiol 61: 1004-1012.
23. Martin, F.N. (2003) Development of alternative strategies for management of soilborne pathogens currently controlled with methyl bromide. Annu Rev Phytopathol 41: 325-350.
24. Notz, R., Maurhofer, M., Dubach, H., Haas, D., and Defago, G. (2002) Fusaric acid-producing strains of Fusarium oxysporum alter 2,4- diacetylphloroglucinol biosynthetic gene expression in Pseudomonas fluorescens CHA0 in vitro and in the rhizosphere of wheat. Appl Environ Microbiol 68: 2229-2235.
25. O'Sullivan, D., and O'Gara, F. (1992) Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens. Microbiol Rev 56: 662-676.
26. Oehl, F., Sieverding, E., Ineichen, K., Mader, P., Boller, T., and Wiemken, A. (2003) Impact of land use intensity on the species diversity of arbuscular mycorrhizal fungi in agroecosystems of central Europe. Appl Environ Microbiol 69: 2816-2824.
27. Olsson, S., and Alström, S. (2000) Characterization of bacteria in soils under barley monoculture and crop rotation. Soil Bio Biochem 32: 1443-1451.
28. Raaijmakers, J.M., Leemann, M., van Oorschot, M.M.P., van der Sluis, I., Schippers, B., and Bakker, P.A.H.M. (1995) Dose-response relationships in biological control of Fusarium wilt of radish by Pseudomonas spp. Phytopathology 85: 1075-1081.
29. Schoonbeek, H., Del Sorbo, G., and De Waard, M.A. (2001) The ABC transporter BcatrB affects the sensitivity of Botrytis cinerea to the phytoalexin resveratrol and the fungicide fenpiclonil. Mol Plant Microbe Interact 14: 562-571.
30. Schouten, A., van denBerg, G., Edel-Hermann, V., Steinberg, C., Gautheron, N., Alabouvette, C., et al. (2004) Defense responses of Fusarium oxysporum to 2,4-diacethylphloroglucinol, a broad-spectrum antibiotic produced by Pseudomonas fluorescens. Mol Plant Microbe Interact 17: 1201-1211.
31. Sheffield, V.C., Cox, D.R., Lerman, L.S., and Myers, R.M. (1989) Attachment of a 40-base-pair G+C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc Natl Acad Sci USA 86: 232-236.
32. Sigler, W.V., Nakatsu, C.H., Reicher, Z.J., and Turco, R.F. (2001) Fate of the biological control agent Pseudomonas aureofaciens TX-1 after application to turfgrass. Appl Environ Microbiol 67: 3542-3548.
33. Simpson, D.R., Thomsett, M.A., and Nicholson, P. (2004) Competitive interactions between Microdochium nivale var. majus, M. nivale var. nivale and Fusarium culmorum in planta and in vitro. Environ Microbiol 6: 79-87.
34. Smit, E., Veenman, C., and Baar, J. (2003) Molecular analysis of ectomycorrhizal basidiomycete communities in a Pinus sylvestris L. stand reveals long-term increased diversity after removal of litter and humus layers. FEMS Microbiol Ecol 45: 49-57.
35. Thomashow, L.S., and Weller, D.M. (1988) Role of phenazine antibiotic from Pseudomonas fluorescens in biological control of Gaeumannomyces graminis var. tritici. J Bacteriol 170: 3499-3508.
36. Van Loon, L.C. (1998) Biotechnology as a means to improve biological control of plant diseases. Med Fac Landbouw Univ Gent 63: 1657-1666.
37. Van Loon, L.C., and Bakker, P.A.H.M. (2003) Signalling in rhizobacteria-plant interactions. In Root Ecology. de Kroon, H., and Visser, E.J.W. (eds). Berlin, Germany: Springer Verlag, pp. 297-330.
38. Viebahn, M., Glandorf, D.C.M., Ouwens, T.W.M., Smit, E., Leeflang, P., Wernars, K., et al. (2003) Repeated introduction of genetically modified Pseudomonas putida WCS358r without intensified effects on the indigenous microflora of field-grown wheat. Appl Environ Microbiol 69: 3110-3118.
39. Weller, D.M. (1988) Biological control of soilborne plant pathogens in the rhizosphere with bacteria. Annu Rev Phytopathol 26: 379-407.
40. Weller, D.M., Raaijmakers, J.M., Gardener, B.B.M., and Thomashow, L.S. (2002) Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annu Rev Phytopathol 40: 309-348.
41. White, T.J., Bruns, T., Lee, S., and Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Application. Innis, M.A., Gelfand, D.H., Sninsky, J.J., and White, T.J. (eds). San Diego: Academic Press, pp. 315-322.
42. Winding, A., Binnerup, S.J., and Pritchard, H. (2004) Nontarget effects of bacterial biological control agents suppressing root pathogenic fungi. FEMS Microbiol Ecol 47: 129-141.