-
1
-
-
9744231340
-
Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing
-
Adekambi, T., and Drancourt, M. 2004. Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing. Int. J. Syst. Evol. Microbiol. 54: 2095-2105.
-
(2004)
Int. J. Syst. Evol. Microbiol.
, vol.54
, pp. 2095-2105
-
-
Adekambi, T.1
Drancourt, M.2
-
2
-
-
0034766265
-
Evaluation of bacteria isolated from rice for plant growth promotion and biological control of seedling disease of rice
-
Adhikari, T.B., Joseph, C.M., Yang, G., Phillips, D.A., and Nelson, L.M. 2001. Evaluation of bacteria isolated from rice for plant growth promotion and biological control of seedling disease of rice. Can. J. Microbiol. 47: 916-924.
-
(2001)
Can. J. Microbiol.
, vol.47
, pp. 916-924
-
-
Adhikari, T.B.1
Joseph, C.M.2
Yang, G.3
Phillips, D.A.4
Nelson, L.M.5
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0035063526
-
Variability and interactions between endophytic bacteria and fungi isolated from leaf tissues of citrus rootstocks
-
Araújo, W.L., Maccheroni, W., Jr., Aguilar-Vildoso, C.I., Barroso, P.A.V., Saridakis, H.O., and Azevedo, J.L. 2001. Variability and interactions between endophytic bacteria and fungi isolated from leaf tissues of citrus rootstocks. Can. J. Microbiol. 47: 229-236.
-
(2001)
Can. J. Microbiol.
, vol.47
, pp. 229-236
-
-
Araújo, W.L.1
Maccheroni Jr., W.2
Aguilar-Vildoso, C.I.3
Barroso, P.A.V.4
Saridakis, H.O.5
Azevedo, J.L.6
-
5
-
-
0036795810
-
Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants
-
Araújo, W.L., Marcon, J., Maccheroni W., Jr., van Elsas, J.D., van Vuurde, J.W.L. and Azevedo, J.L. 2002. Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl. Environ. Microbiol. 68: 4906-4914.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4906-4914
-
-
Araújo, W.L.1
Marcon, J.2
Maccheroni Jr., W.3
Van Elsas, J.D.4
Van Vuurde, J.W.L.5
Azevedo, J.L.6
-
6
-
-
11144316138
-
Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi
-
Berg, G., Krechel, A., Ditz, M., Sikora, R.A., Ulrich, A., and Hallmann, J. 2005. Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi. FEMS Microbiol. Ecol. 51: 215-229.
-
(2005)
FEMS Microbiol. Ecol.
, vol.51
, pp. 215-229
-
-
Berg, G.1
Krechel, A.2
Ditz, M.3
Sikora, R.A.4
Ulrich, A.5
Hallmann, J.6
-
7
-
-
0034964968
-
The diversity of archaea and bacteria in association with the roots of Zea mays L
-
Chelius, M.K., and Triplett, E.W. 2001. The diversity of archaea and bacteria in association with the roots of Zea mays L. Microb. Ecol. 41: 252-263.
-
(2001)
Microb. Ecol.
, vol.41
, pp. 252-263
-
-
Chelius, M.K.1
Triplett, E.W.2
-
8
-
-
0036890139
-
Molecular characterization of bacterial diversity in lodgepole pine (Pinus contorta) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source
-
Chow, M.L., Radomski, C.C., McDermott, J.M., Davies, J., and Axelrood, P.E. 2002. Molecular characterization of bacterial diversity in lodgepole pine (Pinus contorta) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source. FEMS Microbiol. Ecol. 42: 347-357.
-
(2002)
FEMS Microbiol. Ecol.
, vol.42
, pp. 347-357
-
-
Chow, M.L.1
Radomski, C.C.2
McDermott, J.M.3
Davies, J.4
Axelrood, P.E.5
-
9
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet, F. 1988. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16: 10881-10890.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 10881-10890
-
-
Corpet, F.1
-
10
-
-
0032914126
-
Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
-
Dunbar, J., Takala, S., Barns, S.M., Davis, J.A., and Kuske, C.R. 1999. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65: 1662-1669.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1662-1669
-
-
Dunbar, J.1
Takala, S.2
Barns, S.M.3
Davis, J.A.4
Kuske, C.R.5
-
11
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes: Characterization of a gene coding for 16S ribosomal RNA
-
Edwards, U., Rogall, T., Blöcker, H., Emde, M., and Böttger, E.C. 1989. Isolation and direct complete nucleotide determination of entire genes: characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17: 7843-7853.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blöcker, H.3
Emde, M.4
Böttger, E.C.5
-
12
-
-
0033674538
-
Natural incidence of endophytic bacteria in pea cultivars under field conditions
-
Elvira-Recuenco, M., and van Vuurde, J.W.L. 2000. Natural incidence of endophytic bacteria in pea cultivars under field conditions. Can. J. Microbiol. 46: 1036-1041.
-
(2000)
Can. J. Microbiol.
, vol.46
, pp. 1036-1041
-
-
Elvira-Recuenco, M.1
Van Vuurde, J.W.L.2
-
13
-
-
0001307577
-
Growth enhancement and developmental modification of in vitro grown potato (Solanum tuberosum ssp. tuberosum) as affected by a nonfluorescent Pseudomonas sp
-
Frommel, M.I., Nowak, J., and Lazarovits, G. 1991. Growth enhancement and developmental modification of in vitro grown potato (Solanum tuberosum ssp. tuberosum) as affected by a nonfluorescent Pseudomonas sp. Plant Physiol. 96: 928-936.
-
(1991)
Plant Physiol.
, vol.96
, pp. 928-936
-
-
Frommel, M.I.1
Nowak, J.2
Lazarovits, G.3
-
14
-
-
0034968080
-
Analysis of endophytic bacterial communities of potato by plating and denaturating gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments
-
Garbeva, P., van Overbeek, L.S., van Vuurde, J.W.L., and van Elsas, J.D. 2001. Analysis of endophytic bacterial communities of potato by plating and denaturating gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments. Microb. Ecol. 41: 369-383.
-
(2001)
Microb. Ecol.
, vol.41
, pp. 369-383
-
-
Garbeva, P.1
Van Overbeek, L.S.2
Van Vuurde, J.W.L.3
Van Elsas, J.D.4
-
15
-
-
0036236639
-
Identification of cold-tolerant Pseudomonas viridiflava and P. marginalis causing severe carrot postharvest bacterial soft rot during refrigerated export from New Zealand
-
Godfrey, S.A.C., and Marshall, J.W. 2002. Identification of cold-tolerant Pseudomonas viridiflava and P. marginalis causing severe carrot postharvest bacterial soft rot during refrigerated export from New Zealand. Plant Pathol. 51: 155-162.
-
(2002)
Plant Pathol.
, vol.51
, pp. 155-162
-
-
Godfrey, S.A.C.1
Marshall, J.W.2
-
16
-
-
0031453497
-
Bacterial endophytes in agricultural crops
-
Hallmann, J., Quadt-Hallmann, A., Mahaffee, W.F., and Kloepper, J.W. 1997. Bacterial endophytes in agricultural crops. Can. J. Microbiol. 43: 895-914.
-
(1997)
Can. J. Microbiol.
, vol.43
, pp. 895-914
-
-
Hallmann, J.1
Quadt-Hallmann, A.2
Mahaffee, W.F.3
Kloepper, J.W.4
-
17
-
-
0042352304
-
Microbial community dynamics during start-up operation of flowerpot-using fed-batch reactors for composting of household biowaste
-
Hiraishi, A., Narihiro, T., and Yamanaka, Y. 2003. Microbial community dynamics during start-up operation of flowerpot-using fed-batch reactors for composting of household biowaste. Environ. Microbiol. 5: 765-776.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 765-776
-
-
Hiraishi, A.1
Narihiro, T.2
Yamanaka, Y.3
-
18
-
-
2442636907
-
Bacterial communities associated with flowering plants of the Ni-hyperaccumulator Thlaspi goesingense
-
Idris, R., Trifonova, R., Puschenreiter, M., Wenzel, W.W., and Sessitsch, A. 2004. Bacterial communities associated with flowering plants of the Ni-hyperaccumulator Thlaspi goesingense. Appl. Environ. Microbiol. 70: 2667-2677.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2667-2677
-
-
Idris, R.1
Trifonova, R.2
Puschenreiter, M.3
Wenzel, W.W.4
Sessitsch, A.5
-
19
-
-
0000732090
-
Evolution of protein molecules
-
Edited by H.N. Munro. Academic Press, New York
-
Jukes, T.H., and Cantor, C.R. 1969. Evolution of protein molecules. In Mammalian protein metabolism. Edited by H.N. Munro. Academic Press, New York, pp. 21-132.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
20
-
-
0000476341
-
Bacterial endophytes and their effects on plants and uses in agriculture
-
Edited by C.W. Bacon and J.F. White. Marcel Dekker, Inc., New York
-
Kobayashi, D.Y., and Palumbo, J.D. 2000. Bacterial endophytes and their effects on plants and uses in agriculture. In Microbial endophytes. Edited by C.W. Bacon and J.F. White. Marcel Dekker, Inc., New York. pp. 199-233.
-
(2000)
Microbial Endophytes
, pp. 199-233
-
-
Kobayashi, D.Y.1
Palumbo, J.D.2
-
21
-
-
0036433823
-
Potato-associated bacteria and their antagonistic potential towards plant-pathogenic fungi and the plant-parasitic nematode Meloidogyne cognita (Kofoid & White) Chitwood
-
Krechel, A., Faupel, A., Hallmann, J., Ulrich, A., and Berg, G. 2002. Potato-associated bacteria and their antagonistic potential towards plant-pathogenic fungi and the plant-parasitic nematode Meloidogyne cognita (Kofoid & White) Chitwood. Can. J. Microbiol. 48: 772-786.
-
(2002)
Can. J. Microbiol.
, vol.48
, pp. 772-786
-
-
Krechel, A.1
Faupel, A.2
Hallmann, J.3
Ulrich, A.4
Berg, G.5
-
22
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu, W.T., Marsh, T.L., Cheng, H., and Forney, L.J. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63: 4516-4522.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4516-4522
-
-
Liu, W.T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
23
-
-
0032835208
-
Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots
-
Marilley, L., and Aragno, M. 1999. Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots. Appl. Soil Ecol. 13: 127-136.
-
(1999)
Appl. Soil Ecol.
, vol.13
, pp. 127-136
-
-
Marilley, L.1
Aragno, M.2
-
24
-
-
0001823647
-
Bacterial community fingerprinting of amplified 16S and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). Chap. 3.3.2
-
Edited by A.D.L. Akkermans, J.D. van Elsas, and F.J. de Bruijn. Kluwer Academic Publishers, Dordrecht, Netherlands
-
Massol-Deya, A.A., Odelson, D.A., Hickey, R.F., and Tiedje, J.M. 1995. Bacterial community fingerprinting of amplified 16S and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). Chap. 3.3.2. In Molecular microbial ecology manual. Edited by A.D.L. Akkermans, J.D. van Elsas, and F.J. de Bruijn. Kluwer Academic Publishers, Dordrecht, Netherlands. pp. 1-8.
-
(1995)
Molecular Microbial Ecology Manual
, pp. 1-8
-
-
Massol-Deya, A.A.1
Odelson, D.A.2
Hickey, R.F.3
Tiedje, J.M.4
-
25
-
-
0028978068
-
Survey of indigenous bacterial endophytes from cotton and sweet corn
-
McInroy, J.A., and Kloepper, J.W. 1995. Survey of indigenous bacterial endophytes from cotton and sweet corn. Plant Soil. 173: 337-342.
-
(1995)
Plant Soil.
, vol.173
, pp. 337-342
-
-
McInroy, J.A.1
Kloepper, J.W.2
-
26
-
-
18744380657
-
Microbial biodiversity: Approaches to experimental design and hypothesis testing in primary scientific literature from 1975 to 1999
-
Morris, C.E., Bardin, M., Berge, O., Frey-Klett, P., Fromin, N., Girardin, H., Guinebretière, M.-H., Lebaron, P., Thiéry, J.M., and Troussellier, M. 2002. Microbial biodiversity: approaches to experimental design and hypothesis testing in primary scientific literature from 1975 to 1999. Microbiol. Mol. Biol. Rev. 66: 592-616.
-
(2002)
Microbiol. Mol. Biol. Rev.
, vol.66
, pp. 592-616
-
-
Morris, C.E.1
Bardin, M.2
Berge, O.3
Frey-Klett, P.4
Fromin, N.5
Girardin, H.6
Guinebretière, M.-H.7
Lebaron, P.8
Thiéry, J.M.9
Troussellier, M.10
-
27
-
-
0036245014
-
Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica
-
Reiter, B., Pfeifer, U., Schwab, H., and Sessitsch, A. 2002. Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica. Appl. Environ. Microbiol. 68: 2261-2268.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2261-2268
-
-
Reiter, B.1
Pfeifer, U.2
Schwab, H.3
Sessitsch, A.4
-
28
-
-
0344287130
-
Analysis of endophytic Pseudomonas spp. in potato plants affected by pathogen stress by 16S rDNA- and 16S rRNA-based denaturating gradient gel electrophoresis
-
Reiter, B., Wermbter, N., Gyamfi, S., Schwab, H., and Sessitsch, A. 2003. Analysis of endophytic Pseudomonas spp. in potato plants affected by pathogen stress by 16S rDNA- and 16S rRNA-based denaturating gradient gel electrophoresis. Plant Soil. 257: 397-405.
-
(2003)
Plant Soil.
, vol.257
, pp. 397-405
-
-
Reiter, B.1
Wermbter, N.2
Gyamfi, S.3
Schwab, H.4
Sessitsch, A.5
-
29
-
-
0017681196
-
DNA sequencing with the chain-terminating inhibitors
-
Sanger, F., Nicklen, S., and Coulson, A.R. 1977. DNA sequencing with the chain-terminating inhibitors. Proc. Natl. Acad. Sci. U.S.A. 74: 5463-5467.
-
(1977)
Proc. Natl. Acad. Sci. U.S.A.
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
30
-
-
0036191156
-
Cultivation-independent population analysis of bacterial endophytes in three potato varieties based on eubacterial and Actinomycetes-specific PCR of 16S rRNA genes
-
Sessitsch, A., Reiter, B., Pfeifer, U., and Wilhelm, E. 2002. Cultivation-independent population analysis of bacterial endophytes in three potato varieties based on eubacterial and Actinomycetes-specific PCR of 16S rRNA genes. FEMS Microbiol. Ecol. 39: 23-32.
-
(2002)
FEMS Microbiol. Ecol.
, vol.39
, pp. 23-32
-
-
Sessitsch, A.1
Reiter, B.2
Pfeifer, U.3
Wilhelm, E.4
-
31
-
-
3142583353
-
Endophytic bacterial communities of field-grown potato plants and their plant-growth-promoting and antagonistic abilities
-
Sessitsch, A., Reiter, B., and Berg, G. 2004. Endophytic bacterial communities of field-grown potato plants and their plant-growth-promoting and antagonistic abilities. Can. J. Microbiol. 50: 239-249.
-
(2004)
Can. J. Microbiol.
, vol.50
, pp. 239-249
-
-
Sessitsch, A.1
Reiter, B.2
Berg, G.3
-
32
-
-
0030665873
-
Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen
-
Stoltzfus, J.R., So, R., Malarvithi, P.P., Ladha, J.K., and de Bruijn, F.J. 1998. Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen. Plant Soil. 194: 25-36.
-
(1998)
Plant Soil.
, vol.194
, pp. 25-36
-
-
Stoltzfus, J.R.1
So, R.2
Malarvithi, P.P.3
Ladha, J.K.4
De Bruijn, F.J.5
-
33
-
-
0028981729
-
The role of endophytic bacteria during seed piece decay and potato tuberization
-
Sturz, A.V. 1995. The role of endophytic bacteria during seed piece decay and potato tuberization. Plant Soil, 175: 257-263.
-
(1995)
Plant Soil
, vol.175
, pp. 257-263
-
-
Sturz, A.V.1
-
34
-
-
0033982720
-
Bacterial endophytes: Potential role in developing sustainable systems of crop production
-
Sturz, A.V., Christie, B.R., and Nowak, J. 2000. Bacterial endophytes: potential role in developing sustainable systems of crop production. Crit. Rev. Plant Sci. 19: 1-30.
-
(2000)
Crit. Rev. Plant Sci.
, vol.19
, pp. 1-30
-
-
Sturz, A.V.1
Christie, B.R.2
Nowak, J.3
-
35
-
-
0032986394
-
Physiological characterization of viable-but-nonculturable Campylobacter jejeuni cells
-
Tholozan, J.L., Cappelier, J.M., Tissier, J.P., Delattre, G., and Federighi, M. 1999. Physiological characterization of viable-but-nonculturable Campylobacter jejeuni cells. Appl. Environ. Microbiol. 65: 1110-1116.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1110-1116
-
-
Tholozan, J.L.1
Cappelier, J.M.2
Tissier, J.P.3
Delattre, G.4
Federighi, M.5
-
36
-
-
0000925988
-
Bacteria in apparently healthy pinto beans
-
Thomas, W.D., and Graham, R.W. 1952. Bacteria in apparently healthy pinto beans. Phytopathology, 42: 214.
-
(1952)
Phytopathology
, vol.42
, pp. 214
-
-
Thomas, W.D.1
Graham, R.W.2
-
37
-
-
0030798662
-
Predominance of nonculturable cells of the biocontrol strain Pseudomonas fluorescens CHA0 in the surface horizon of large outdoor lysimeters
-
Troxler, J., Zala, M., Moenne-Loccoz, Y., Keel, C., and Defago, G. 1997. Predominance of nonculturable cells of the biocontrol strain Pseudomonas fluorescens CHA0 in the surface horizon of large outdoor lysimeters. Appl. Environ. Microbiol. 63: 3776-3782.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3776-3782
-
-
Troxler, J.1
Zala, M.2
Moenne-Loccoz, Y.3
Keel, C.4
Defago, G.5
-
38
-
-
0028509254
-
TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
-
van de Peer, Y., and de Wachter, R. 1994. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 10: 569-570.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 569-570
-
-
Van De Peer, Y.1
De Wachter, R.2
-
39
-
-
0036254157
-
Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants
-
Zinniel, D.K., Lambrecht, P., Harris, N.B., Feng, Z., Kuczmarski, D., Higley, P., Ishimaru, C.A., Arunakumari, A., Barletta, R.G., and Vidaver, A.K. 2002. Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants. Appl. Environ. Microbiol. 68: 2198-2208.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2198-2208
-
-
Zinniel, D.K.1
Lambrecht, P.2
Harris, N.B.3
Feng, Z.4
Kuczmarski, D.5
Higley, P.6
Ishimaru, C.A.7
Arunakumari, A.8
Barletta, R.G.9
Vidaver, A.K.10
|