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Volumn 56, Issue , 2002, Pages 211-236

Microbial communities and their interactions in soil and rhizosphere ecosystems

Author keywords

16S rRNA; Community fingerprint; Culture independent community analysis; Microbial diversity; Microbial ecology; Plant microbe interactions

Indexed keywords

RNA 16S;

EID: 0036405388     PISSN: 00664227     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.micro.56.012302.161120     Document Type: Review
Times cited : (359)

References (149)
  • 1
    • 0035912796 scopus 로고    scopus 로고
    • A novel application of gene arrays: Escherichia coli array provides insight into the biology of the obligate endosymbiont of tsetse flies
    • Akman L, Aksoy S. 2001. A novel application of gene arrays: Escherichia coli array provides insight into the biology of the obligate endosymbiont of tsetse flies. Proc. Natl. Acad. Sci. USA 98:7546-51
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 7546-7551
    • Akman, L.1    Aksoy, S.2
  • 2
    • 0034018128 scopus 로고    scopus 로고
    • Who is out there? Microbial aspects of biodiversity
    • Amann R. 2000. Who is out there? Microbial aspects of biodiversity. Syst. Appl. Microbiol. 23:1-8
    • (2000) Syst. Appl. Microbiol. , vol.23 , pp. 1-8
    • Amann, R.1
  • 3
    • 0035370087 scopus 로고    scopus 로고
    • The identification of microorganisms by fluorescence in situ hybridisation
    • Amann R, Fuchs BM, Behrens S. 2001. The identification of microorganisms by fluorescence in situ hybridisation. Curr. Opin. Biotechnol. 12:231-36
    • (2001) Curr. Opin. Biotechnol. , vol.12 , pp. 231-236
    • Amann, R.1    Fuchs, B.M.2    Behrens, S.3
  • 4
    • 0000940317 scopus 로고
    • Fluorescently labeled, ribosomal RNA-targeted oligonucleotide probes in the study of microbial ecology
    • Amann RI. 1995. Fluorescently labeled, ribosomal RNA-targeted oligonucleotide probes in the study of microbial ecology. Mol. Ecol. 4:543-53
    • (1995) Mol. Ecol. , vol.4 , pp. 543-553
    • Amann, R.I.1
  • 5
    • 0028946084 scopus 로고
    • Phylogenetic identification and insitu detection of individual microbialcells without cultivation
    • Amann RI, Ludwig W, Schleifer KH. 1995. Phylogenetic identification and insitu detection of individual microbialcells without cultivation. Microbiol. Rev. 59:143-69
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 6
    • 0000450150 scopus 로고    scopus 로고
    • Bacterial diversity in an arctic lake: A freshwater SAR11 cluster
    • Bahr M, Hobbie JE, Sogin ML. 1996. Bacterial diversity in an arctic lake: A freshwater SAR11 cluster. Aquat. Microb. Ecol. 11:271-77
    • (1996) Aquat. Microb. Ecol. , vol.11 , pp. 271-277
    • Bahr, M.1    Hobbie, J.E.2    Sogin, M.L.3
  • 7
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns SM, Delwiche CF, Palmer JD, Pace NR. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93:9188-93
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 8
    • 0034537085 scopus 로고    scopus 로고
    • Evolution of bacterial diversity during enrichment of PCP-degrading activated soils
    • Beaulieu M, Bécaert V, Deschênes L, Villemur R. 2000. Evolution of bacterial diversity during enrichment of PCP-degrading activated soils. Microb. Ecol. 40:345-55
    • (2000) Microb. Ecol. , vol.40 , pp. 345-355
    • Beaulieu, M.1    Bécaert, V.2    Deschênes, L.3    Villemur, R.4
  • 9
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
    • Béjà O, Aravind L, Koonin EV, Suzuki MT, Hadd A, et al. 2000. Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289:1902-6
    • (2000) Science , vol.289 , pp. 1902-1906
    • Béjà, O.1    Aravind, L.2    Koonin, E.V.3    Suzuki, M.T.4    Hadd, A.5
  • 10
    • 0034554741 scopus 로고    scopus 로고
    • Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
    • Beja O, Suzuki MT, Koonin EV, Aravind L, Hadd A, et al. 2000. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ. Microbiol. 2:516-29
    • (2000) Environ. Microbiol. , vol.2 , pp. 516-529
    • Beja, O.1    Suzuki, M.T.2    Koonin, E.V.3    Aravind, L.4    Hadd, A.5
  • 11
    • 0011147494 scopus 로고    scopus 로고
    • Application of a diversity array to study specific substrate utilization in individual populations of aquatic heterotrophic bacteria
    • Amsterdam, The Netherlands
    • Bertilsson A, Polz M. 2001. Application of a diversity array to study specific substrate utilization in individual populations of aquatic heterotrophic bacteria. 9th Int. Symp. Microb. Ecol. Amsterdam, The Netherlands
    • (2001) 9th Int. Symp. Microb. Ecol.
    • Bertilsson, A.1    Polz, M.2
  • 13
    • 0032792811 scopus 로고    scopus 로고
    • Culture-independent identification of microorganisms that respond to specified stimuli
    • Borneman J. 1999. Culture-independent identification of microorganisms that respond to specified stimuli. Appl. Environ. Microbiol. 65:3398-400
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3398-3400
    • Borneman, J.1
  • 15
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman J, Triplett EW. 1997. Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63:2647-53
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 16
    • 0033967441 scopus 로고    scopus 로고
    • The microbial composition of three limnologically disparate hypersaline Antarctic lakes
    • Bowman JP, McCammon SA, Rea SM, McMeekin TA. 2000. The microbial composition of three limnologically disparate hypersaline Antarctic lakes. FEMS Microbiol. Lett. 183:81-88
    • (2000) FEMS Microbiol. Lett. , vol.183 , pp. 81-88
    • Bowman, J.P.1    McCammon, S.A.2    Rea, S.M.3    McMeekin, T.A.4
  • 17
    • 0035963668 scopus 로고    scopus 로고
    • Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA
    • Brady SF, Chao CJ, Handelsman J, Clardy J. 2001. Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA. Org. Lett. 3:1981-84
    • (2001) Org. Lett. , vol.3 , pp. 1981-1984
    • Brady, S.F.1    Chao, C.J.2    Handelsman, J.3    Clardy, J.4
  • 18
    • 0034016758 scopus 로고    scopus 로고
    • Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities
    • Braker G, Zhou J, Wu L, Devol AH, Tiedje JM. 2000. Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities. Appl. Environ. Microbiol. 66:2096-104
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2096-2104
    • Braker, G.1    Zhou, J.2    Wu, L.3    Devol, A.H.4    Tiedje, J.M.5
  • 19
    • 0033015223 scopus 로고    scopus 로고
    • Comparitive diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
    • Bruns MA. 1999. Comparitive diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl. Environ. Microbiol. 65:2994-3000
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2994-3000
    • Bruns, M.A.1
  • 20
    • 0031733317 scopus 로고    scopus 로고
    • Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils
    • Buckley DH, Graber JR, Schmidt TM. 1998. Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils. Appl. Environ. Microbiol. 64:4333-39
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4333-4339
    • Buckley, D.H.1    Graber, J.R.2    Schmidt, T.M.3
  • 21
    • 0034898780 scopus 로고    scopus 로고
    • The structure of microbial communities in soil and the lasting impact of cultivation
    • Buckley DH, Schmidt TM. 2001. The structure of microbial communities in soil and the lasting impact of cultivation. Microb. Ecol. 42:11-21
    • (2001) Microb. Ecol. , vol.42 , pp. 11-21
    • Buckley, D.H.1    Schmidt, T.M.2
  • 22
    • 0034791958 scopus 로고    scopus 로고
    • Glyphosate toxicity and the effects of long-term vegetation control on soil microbial communities
    • Busse MD, Ratcliff AW, Shestak CJ, Powers RF. 2001. Glyphosate toxicity and the effects of long-term vegetation control on soil microbial communities. Soil Biol. Biochem. 33:1777-89
    • (2001) Soil Biol. Biochem. , vol.33 , pp. 1777-1789
    • Busse, M.D.1    Ratcliff, A.W.2    Shestak, C.J.3    Powers, R.F.4
  • 23
    • 0031149569 scopus 로고    scopus 로고
    • Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries
    • Chandler DP, Fredrickson JK, Brockman J. 1997. Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries. Mol. Ecol. 6:475-82
    • (1997) Mol. Ecol. , vol.6 , pp. 475-482
    • Chandler, D.P.1    Fredrickson, J.K.2    Brockman, J.3
  • 24
    • 0034073514 scopus 로고    scopus 로고
    • Dyadobacter fermentans gen. nov., sp nov., a novel gram-negative bacterium isolated from surface-sterilized Zea mays stems
    • Chelius MK, Triplett EW. 2000. Dyadobacter fermentans gen. nov., sp nov., a novel gram-negative bacterium isolated from surface-sterilized Zea mays stems. Int. J. Syst. Evol. Microbiol. 50:751-58
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 751-758
    • Chelius, M.K.1    Triplett, E.W.2
  • 25
    • 0033953105 scopus 로고    scopus 로고
    • Immunolocalization of dinitrogenase reductase produced by Klebsiella pneumoniae in association with Zea mays L
    • Chelius MK, Triplett EW. 2000. Immunolocalization of dinitrogenase reductase produced by Klebsiella pneumoniae in association with Zea mays L. Appl. Environ. Microbiol. 66:783-87
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 783-787
    • Chelius, M.K.1    Triplett, E.W.2
  • 26
    • 0034964968 scopus 로고    scopus 로고
    • The diversity of archaea and bacteria in association with the roots of Zea mays L
    • Chelius MK, Triplett EW. 2001. The diversity of archaea and bacteria in association with the roots of Zea mays L. Microb. Ecol. 41:252-63
    • (2001) Microb. Ecol. , vol.41 , pp. 252-263
    • Chelius, M.K.1    Triplett, E.W.2
  • 27
    • 0034467820 scopus 로고    scopus 로고
    • Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil
    • Cho J-C, Tiedje JM. 2000. Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl. Environ. Microbiol. 66:5448-56
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5448-5456
    • Cho, J.-C.1    Tiedje, J.M.2
  • 28
    • 0031239470 scopus 로고    scopus 로고
    • Development of a physiological approach to measuring the catabolic diversity of soil microbial communities
    • Degens BP, Harris JA. 1997. Development of a physiological approach to measuring the catabolic diversity of soil microbial communities. Soil Biol. Biochem. 29:1309-20
    • (1997) Soil Biol. Biochem. , vol.29 , pp. 1309-1320
    • Degens, B.P.1    Harris, J.A.2
  • 29
    • 0035527414 scopus 로고    scopus 로고
    • Environmental diversity of Bacteria and Archaea
    • DeLong EE, Pace NR. 2001. Environmental diversity of Bacteria and Archaea. Syst. Biol. 50:470-78
    • (2001) Syst. Biol. , vol.50 , pp. 470-478
    • DeLong, E.E.1    Pace, N.R.2
  • 30
    • 0034069650 scopus 로고    scopus 로고
    • Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria
    • Dojka MA, Harris JK, Pace NR. 2000. Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria. Appl. Environ. Microbiol. 66:1617-21
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1617-1621
    • Dojka, M.A.1    Harris, J.K.2    Pace, N.R.3
  • 31
    • 0035318378 scopus 로고    scopus 로고
    • Genomic interspecies microarray hybridization: Rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames
    • Dong YM, Glasner JD, Blattner FR, Triplett EW. 2001. Genomic interspecies microarray hybridization: Rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames. Appl. Environ. Microbiol. 67:1911-21
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1911-1921
    • Dong, Y.M.1    Glasner, J.D.2    Blattner, F.R.3    Triplett, E.W.4
  • 32
    • 0032914126 scopus 로고    scopus 로고
    • Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
    • Dunbar J, Takala S, Barns SM, Davis JA, Kuske CR. 1999. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65:1662-69
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1662-1669
    • Dunbar, J.1    Takala, S.2    Barns, S.M.3    Davis, J.A.4    Kuske, C.R.5
  • 33
    • 0032960267 scopus 로고    scopus 로고
    • Identification of Rhizobium leguminosarum and Rhizobium sp. (Cicer) strains using a custom fatty acid methyl ester (FAME) profile library
    • Dunfield KE, Xavier LJC, Germida JJ. 1999. Identification of Rhizobium leguminosarum and Rhizobium sp. (Cicer) strains using a custom fatty acid methyl ester (FAME) profile library. J. Appl. Microbiol. 86:78-86
    • (1999) J. Appl. Microbiol. , vol.86 , pp. 78-86
    • Dunfield, K.E.1    Xavier, L.J.C.2    Germida, J.J.3
  • 34
    • 0033025914 scopus 로고    scopus 로고
    • Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and communitylevel physiological profiles
    • El Fantroussi S, Verschuere L, Verstraete W, Top EM. 1999. Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and communitylevel physiological profiles. Appl. Environ. Microbiol. 65:982-88
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 982-988
    • El Fantroussi, S.1    Verschuere, L.2    Verstraete, W.3    Top, E.M.4
  • 35
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
    • Farrelly V, Rainey FA, Stackebrandt E. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microb. 61:2798-801
    • (1995) Appl. Environ. Microb. , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 36
    • 0033827361 scopus 로고    scopus 로고
    • Response of a soil bacterial community to grassland succession as monitored by 16S rRNA levels of the predominant ribotypes
    • Felske A, Wolterink A, Van Lis R, De Vos WM, Akkermans ADL. 2000. Response of a soil bacterial community to grassland succession as monitored by 16S rRNA levels of the predominant ribotypes. Appl. Environ. Microbiol. 66:3998-4003
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3998-4003
    • Felske, A.1    Wolterink, A.2    Van Lis, R.3    De Vos, W.M.4    Akkermans, A.D.L.5
  • 38
    • 0033785383 scopus 로고    scopus 로고
    • Effects of resources and trophic interactions on fresh-water bacterioplankton diversity
    • Fisher MM, Klug JL, Lauster G, Newton M, Triplett EW. 2000. Effects of resources and trophic interactions on fresh-water bacterioplankton diversity. Microb. Ecol. 40:125-38
    • (2000) Microb. Ecol. , vol.40 , pp. 125-138
    • Fisher, M.M.1    Klug, J.L.2    Lauster, G.3    Newton, M.4    Triplett, E.W.5
  • 39
    • 0032879764 scopus 로고    scopus 로고
    • Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
    • Fisher MM, Triplett EW. 1999. Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl. Environ. Microbiol. 65:4630-36
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 40
    • 0025919424 scopus 로고
    • Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization
    • Garland JL, Mills AL. 1991. Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl. Environ. Microbiol. 57:2351-59
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 2351-2359
    • Garland, J.L.1    Mills, A.L.2
  • 43
    • 18044399329 scopus 로고    scopus 로고
    • Effect of genetically modified Pseudomonas putida WCS358r on the fungal rhizosphere microflora of field-grown wheat
    • Glandorf DCM, Verheggen P, Jansen T, Jorritsma JW, Smit E, et al. 2001. Effect of genetically modified Pseudomonas putida WCS358r on the fungal rhizosphere microflora of field-grown wheat. Appl. Environ. Microbiol. 67:3371-78
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3371-3378
    • Glandorf, D.C.M.1    Verheggen, P.2    Jansen, T.3    Jorritsma, J.W.4    Smit, E.5
  • 44
    • 0026865031 scopus 로고
    • Application of random amplified polymorphic DNA (RAPD) in molecular ecology
    • Hadrys H, Balick M, Schierwater B. 1992. Application of random amplified polymorphic DNA (RAPD) in molecular ecology. Mol. Ecol. 1:55-63
    • (1992) Mol. Ecol. , vol.1 , pp. 55-63
    • Hadrys, H.1    Balick, M.2    Schierwater, B.3
  • 45
    • 0000314613 scopus 로고
    • Analyses of DNA extracted from microbial communities
    • ed. K Ritz, J Dighton, KE Giller, Chichester, UK: Wiley
    • Harris D. 1994. Analyses of DNA extracted from microbial communities. In Beyond the Biomass, ed. K Ritz, J Dighton, KE Giller, pp. 111-18. Chichester, UK: Wiley
    • (1994) Beyond the Biomass , pp. 111-118
    • Harris, D.1
  • 46
    • 0031982528 scopus 로고    scopus 로고
    • Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
    • Head IM, Saunders JR, Pickup RW. 1998. Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms. Microb. Ecol. 35:1-21
    • (1998) Microb. Ecol. , vol.35 , pp. 1-21
    • Head, I.M.1    Saunders, J.R.2    Pickup, R.W.3
  • 47
    • 0032925877 scopus 로고    scopus 로고
    • Molecular analyses of the methaneoxidizing microbial community in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase
    • Henckel T, Friedrich M, Conrad R. 1999. Molecular analyses of the methaneoxidizing microbial community in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase. Appl. Environ. Microbiol. 65:1980-90
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1980-1990
    • Henckel, T.1    Friedrich, M.2    Conrad, R.3
  • 49
    • 0002912874 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis and temperature gradient gel electrophoresis for studying soil microbial communities
    • ed. JD van Elsas, EMH Wellington, JT Trevors, New York: Marcel Dekker
    • Heuer H, Smalla K. 1997. Application of denaturing gradient gel electrophoresis and temperature gradient gel electrophoresis for studying soil microbial communities. In Modern Soil Microbiology, ed. JD van Elsas, EMH Wellington, JT Trevors, pp. 353-74. New York: Marcel Dekker
    • (1997) Modern Soil Microbiology , pp. 353-374
    • Heuer, H.1    Smalla, K.2
  • 50
    • 0030985422 scopus 로고    scopus 로고
    • Evaluation of community-level catabolic profiling using BIOLOG GN microplates to study microbial community changes in potato phyllosphere
    • Heuer H, Smalla K. 1997. Evaluation of community-level catabolic profiling using BIOLOG GN microplates to study microbial community changes in potato phyllosphere. J. Microbiol. Methods 30:49-61
    • (1997) J. Microbiol. Methods , vol.30 , pp. 49-61
    • Heuer, H.1    Smalla, K.2
  • 52
    • 0034888898 scopus 로고    scopus 로고
    • Species composition of cultivated and noncultivated bacteria from short filaments in an Icelandic hot spring at 88 degrees C
    • Hjorleifsdottir S, Skirnisdottir S, Hreggvidsson GO, Holst O, Kristjansson JK. 2001. Species composition of cultivated and noncultivated bacteria from short filaments in an Icelandic hot spring at 88 degrees C. Microb. Ecol. 42:117-25
    • (2001) Microb. Ecol. , vol.42 , pp. 117-125
    • Hjorleifsdottir, S.1    Skirnisdottir, S.2    Hreggvidsson, G.O.3    Holst, O.4    Kristjansson, J.K.5
  • 53
    • 0345104351 scopus 로고    scopus 로고
    • Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis
    • Höfle MG, Haas H, Dominik K. 1999. Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis. Appl. Environ. Microbiol. 65:3164-74
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3164-3174
    • Höfle, M.G.1    Haas, H.2    Dominik, K.3
  • 54
    • 0029391360 scopus 로고
    • DNA-based monitoring of total bacterial community structure in environmental samples
    • Holben WE, Harris D. 1995. DNA-based monitoring of total bacterial community structure in environmental samples. Mol. Ecol. 4:627-31
    • (1995) Mol. Ecol. , vol.4 , pp. 627-631
    • Holben, W.E.1    Harris, D.2
  • 57
    • 0032444949 scopus 로고    scopus 로고
    • Fatty acid methyl ester (FAME) profiles as a tool to investigate community structure of two agricultural sails
    • Ibekwe AM, Kennedy AC. 1998. Fatty acid methyl ester (FAME) profiles as a tool to investigate community structure of two agricultural sails. Plant Soil 206:151-61
    • (1998) Plant Soil , vol.206 , pp. 151-161
    • Ibekwe, A.M.1    Kennedy, A.C.2
  • 59
    • 0002612012 scopus 로고    scopus 로고
    • Substrate utilization tests in microbial ecology - A preface to the special issue of the Journal of Microbiological Methods
    • Insam H. 1997. Substrate utilization tests in microbial ecology - A preface to the special issue of the Journal of Microbiological Methods. J. Microbiol. Methods 30:1-2
    • (1997) J. Microbiol. Methods , vol.30 , pp. 1-2
    • Insam, H.1
  • 60
    • 0032080387 scopus 로고    scopus 로고
    • Diversity in methane enrichments from agricultural soil revealed by DGGE separation of PCR amplifed 16S rDNA fragments
    • Jensen S, Øvreås L, Daae FL, Torsvik V. 1998. Diversity in methane enrichments from agricultural soil revealed by DGGE separation of PCR amplifed 16S rDNA fragments. FEMS Microbiol. Ecol. 26:17-26
    • (1998) FEMS Microbiol. Ecol. , vol.26 , pp. 17-26
    • Jensen, S.1    Øvreås, L.2    Daae, F.L.3    Torsvik, V.4
  • 61
    • 0034954171 scopus 로고    scopus 로고
    • Pesticide effects on bacterial diversity in agricultural soils - A review
    • Johnsen K, Jacobsen CS, Torsvik V, Sørenson J. 2001. Pesticide effects on bacterial diversity in agricultural soils - A review. Biol. Fertil. Soils 33:443-53
    • (2001) Biol. Fertil. Soils , vol.33 , pp. 443-453
    • Johnsen, K.1    Jacobsen, C.S.2    Torsvik, V.3    Sørenson, J.4
  • 62
    • 0030894624 scopus 로고    scopus 로고
    • Novel group within the kingdom Crenarchaeota from boreal forest soil
    • Jurgens G, Lindstrom K, Saano A. 1997. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl. Environ. Microbiol. 63:803-5
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 803-805
    • Jurgens, G.1    Lindstrom, K.2    Saano, A.3
  • 63
    • 0032784378 scopus 로고    scopus 로고
    • Diversity of soil Archaea in boreal forest before, and after clear-cutting and prescribed burning
    • Jurgens G, Saano A. 1999. Diversity of soil Archaea in boreal forest before, and after clear-cutting and prescribed burning. FEMS Microbiol. Ecol. 29:205-13
    • (1999) FEMS Microbiol. Ecol. , vol.29 , pp. 205-213
    • Jurgens, G.1    Saano, A.2
  • 64
    • 0034888778 scopus 로고    scopus 로고
    • Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (Brassica napus cv. Westar) employing cultivation-dependent and cultivation-independent approaches
    • Kaiser O, Pühler A, Selbitschka W. 2001. Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (Brassica napus cv. Westar) employing cultivation-dependent and cultivation-independent approaches. Microb. Ecol. 42:136-49
    • (2001) Microb. Ecol. , vol.42 , pp. 136-149
    • Kaiser, O.1    Pühler, A.2    Selbitschka, W.3
  • 65
    • 0030620894 scopus 로고    scopus 로고
    • Determination of active marine bacterioplankton: A comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining
    • Karner M, Fuhrman JA. 1997. Determination of active marine bacterioplankton: A comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining. Appl. Environ. Microbiol. 63:1208-13
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1208-1213
    • Karner, M.1    Fuhrman, J.A.2
  • 66
    • 0035040382 scopus 로고    scopus 로고
    • Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics
    • Kitts CL. 2001. Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics. Curr. Issues Intest. Microbiol. 2:17-25
    • (2001) Curr. Issues Intest. Microbiol. , vol.2 , pp. 17-25
    • Kitts, C.L.1
  • 67
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • ed. E Stackebrandt, M Goodfellow, Chichester, UK: Wiley
    • Lane DJ. 1991. 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, ed. E Stackebrandt, M Goodfellow, pp. 131-73. Chichester, UK: Wiley
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 131-173
    • Lane, D.J.1
  • 68
    • 0033844245 scopus 로고    scopus 로고
    • Comparison of methods to investigate microbial populations in soils under different agricultural management
    • Lawlor K, Knight BP, Barbosa-Jefferson VL, Lane PW, Lilley AK, et al. 2000. Comparison of methods to investigate microbial populations in soils under different agricultural management. FEMS Microbiol. Ecol. 33:129-37
    • (2000) FEMS Microbiol. Ecol. , vol.33 , pp. 129-137
    • Lawlor, K.1    Knight, B.P.2    Barbosa-Jefferson, V.L.3    Lane, P.W.4    Lilley, A.K.5
  • 69
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack W, Stackebrandt E. 1992. Occurrence of novel groups of the domain bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174:5072-78
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 70
    • 0034971914 scopus 로고    scopus 로고
    • CMEIAS: A computer-aided system for the image analysis of bacterial morphotypes in microbial communities
    • Liu J, Dazzo FB, Glagoleva O, Yu B, Jain AK. 2001. CMEIAS: A computer-aided system for the image analysis of bacterial morphotypes in microbial communities. Microb. Ecol. 41:173-94
    • (2001) Microb. Ecol. , vol.41 , pp. 173-194
    • Liu, J.1    Dazzo, F.B.2    Glagoleva, O.3    Yu, B.4    Jain, A.K.5
  • 71
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu WT, Marsh TL, Cheng H, Forney LJ. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-22
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 72
    • 0034119122 scopus 로고    scopus 로고
    • Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants
    • Lukow T, Dunfield PF, Liesack W. 2000. Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants. FEMS Microbiol. Ecol. 32:241-47
    • (2000) FEMS Microbiol. Ecol. , vol.32 , pp. 241-247
    • Lukow, T.1    Dunfield, P.F.2    Liesack, W.3
  • 75
    • 0032835208 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots
    • Marilley L, Aragno M. 1999. Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots. Appl. Soil Ecol. 13:127-36
    • (1999) Appl. Soil Ecol. , vol.13 , pp. 127-136
    • Marilley, L.1    Aragno, M.2
  • 76
    • 0034851136 scopus 로고    scopus 로고
    • Soil and plant specific effects on bacterial community composition in the rhizosphere
    • Marschner P, Yang C-H, Lieberei R, Crowley DE. 2001. Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biol. Biochem. 33:1437-45
    • (2001) Soil Biol. Biochem. , vol.33 , pp. 1437-1445
    • Marschner, P.1    Yang, C.-H.2    Lieberei, R.3    Crowley, D.E.4
  • 77
    • 0033152351 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism (T-RFLP): An emerging method for characterizing diversity among homologous populations of amplification products
    • Marsh T. 1999. Terminal restriction fragment length polymorphism (T-RFLP): An emerging method for characterizing diversity among homologous populations of amplification products. Curr. Opin. Microbiol. 2:323-27
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 323-327
    • Marsh, T.1
  • 78
    • 0033868092 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis
    • Marsh TL, Saxman P, Cole J, Tiedje J. 2000. Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis. Appl. Environ. Microbiol. 66:3616-20
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3616-3620
    • Marsh, T.L.1    Saxman, P.2    Cole, J.3    Tiedje, J.4
  • 79
    • 0001823647 scopus 로고
    • Bacterial community fingerprinting of amplified 16S and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA)
    • ed. ADL Akkermans, JD van Elsas, FJ de Bruijn, Dordrecht/Boston/London: Kluwer
    • Massol-Deya AA, Odelson DA, Hickey RF, Tiedje JM. 1995. Bacterial community fingerprinting of amplified 16S and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). In Molecular Microbial Ecology Manual, ed. ADL Akkermans, JD van Elsas, FJ de Bruijn, 2:1-8. Dordrecht/Boston/London: Kluwer
    • (1995) Molecular Microbial Ecology Manual , vol.2 , pp. 1-8
    • Massol-Deya, A.A.1    Odelson, D.A.2    Hickey, R.F.3    Tiedje, J.M.4
  • 80
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
    • McCaig AE, Glover LA, Prosser JI. 1999. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl. Environ. Microbiol. 65:1721-30
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1721-1730
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 81
    • 0034061727 scopus 로고    scopus 로고
    • Genotypic and phenotypic diversity of phlD-containing Pseudomonas isolated from the rhizosphere of wheat
    • McSpadden Gardener B, Schroeder K, Kalloger S, Raaijmakers J, et al. 2000. Genotypic and phenotypic diversity of phlD-containing Pseudomonas isolated from the rhizosphere of wheat. Appl. Environ. Microbiol. 66:1939-46
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1939-1946
    • McSpadden Gardener, B.1    Schroeder, K.2    Kalloger, S.3    Raaijmakers, J.4
  • 82
    • 0035001349 scopus 로고    scopus 로고
    • Relative abundance of denitrifying and dinitrogen-fixing bacteria in layers of a forest soil
    • Mergel A, Schmitz O, Mallman T, Bothe H. 2001. Relative abundance of denitrifying and dinitrogen-fixing bacteria in layers of a forest soil. FEMS Microbiol. Ecol. 36:33-42
    • (2001) FEMS Microbiol. Ecol. , vol.36 , pp. 33-42
    • Mergel, A.1    Schmitz, O.2    Mallman, T.3    Bothe, H.4
  • 83
    • 0035859896 scopus 로고    scopus 로고
    • DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes
    • Murray AE, Lies D, Li G, Nealson K, Zhou J, Tiedje JM. 2001. DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes. Proc. Natl. Acad. Sci. USA 98:9853-58
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 9853-9858
    • Murray, A.E.1    Lies, D.2    Li, G.3    Nealson, K.4    Zhou, J.5    Tiedje, J.M.6
  • 84
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer GA, de Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.A.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 85
    • 0034233490 scopus 로고    scopus 로고
    • Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products
    • Nakatsu CH, Torsvik V, Øvreås L. 2000. Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products. Soil Sci. Soc. Am. J. 64:1382-88
    • (2000) Soil Sci. Soc. Am. J. , vol.64 , pp. 1382-1388
    • Nakatsu, C.H.1    Torsvik, V.2    Øvreås, L.3
  • 86
    • 0031780084 scopus 로고    scopus 로고
    • The effects of pesticides on the diversity of culturable soil bacteria
    • Nicholson PS, Hirsch PR. 1998. The effects of pesticides on the diversity of culturable soil bacteria. J. Appl. Microbiol. 84:551-58
    • (1998) J. Appl. Microbiol. , vol.84 , pp. 551-558
    • Nicholson, P.S.1    Hirsch, P.R.2
  • 87
    • 0035018373 scopus 로고    scopus 로고
    • Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia
    • Niemi RM, Heiskanen I, Wallenius K, Lindstrom K. 2001. Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia. J. Microbiol. Methods 45:155-65
    • (2001) J. Microbiol. Methods , vol.45 , pp. 155-165
    • Niemi, R.M.1    Heiskanen, I.2    Wallenius, K.3    Lindstrom, K.4
  • 88
    • 0033774886 scopus 로고    scopus 로고
    • Bacterial origin and community composition in the barley phytosphere as a function of habitat and presowing conditions
    • Normander B, Prosser JI. 2000. Bacterial origin and community composition in the barley phytosphere as a function of habitat and presowing conditions. Appl. Environ. Microbiol. 66:4372-77
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4372-4377
    • Normander, B.1    Prosser, J.I.2
  • 89
    • 17644436677 scopus 로고    scopus 로고
    • Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil
    • Nüsslein K, Tiedje JM. 1999. Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil. Appl. Environ. Microbiol. 65:3622-26
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3622-3626
    • Nüsslein, K.1    Tiedje, J.M.2
  • 90
    • 0034547801 scopus 로고    scopus 로고
    • An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
    • Osborne AM, Moore ERB, Timmis KN. 2000. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50
    • (2000) Environ. Microbiol. , vol.2 , pp. 39-50
    • Osborne, A.M.1    Moore, E.R.B.2    Timmis, K.N.3
  • 91
    • 0034127563 scopus 로고    scopus 로고
    • Population and community level approaches for analysing microbial diversity in natural environments
    • Øvreås L. 2000. Population and community level approaches for analysing microbial diversity in natural environments. Ecol. Lett. 3:236-51
    • (2000) Ecol. Lett. , vol.3 , pp. 236-251
    • Øvreås, L.1
  • 92
    • 0032412146 scopus 로고    scopus 로고
    • Microbial diversity and community structure in two different agricultural soil communities
    • Øvreås L, Torsvik V. 1998. Microbial diversity and community structure in two different agricultural soil communities. Microb. Ecol. 36:303-15
    • (1998) Microb. Ecol. , vol.36 , pp. 303-315
    • Øvreås, L.1    Torsvik, V.2
  • 93
    • 0034543516 scopus 로고    scopus 로고
    • Community interactions: Towards a natural history of the microbial world
    • Pace NR. 2000. Community interactions: Towards a natural history of the microbial world. Environ. Microbiol. 2:7-8
    • (2000) Environ. Microbiol. , vol.2 , pp. 7-8
    • Pace, N.R.1
  • 94
    • 0030476362 scopus 로고    scopus 로고
    • A diazotrophic bacterial endophyte isolated from stems of Zea mays L and Zea luxurians Iltis and Doebley
    • Palus JA, Borneman J, Ludden PW, Triplett EW. 1996. A diazotrophic bacterial endophyte isolated from stems of Zea mays L and Zea luxurians Iltis and Doebley. Plant Soil 186:135-42
    • (1996) Plant Soil , vol.186 , pp. 135-142
    • Palus, J.A.1    Borneman, J.2    Ludden, P.W.3    Triplett, E.W.4
  • 96
    • 0035348260 scopus 로고    scopus 로고
    • Comparison of nifH gene pools in soils and soil microenvironments with contrasting properties
    • Poly F, Ranjard L, Nazaret S, Gourbiere F, Monrozier LJ. 2001. Comparison of nifH gene pools in soils and soil microenvironments with contrasting properties. Appl. Environ. Microbiol. 67:2255-62
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2255-2262
    • Poly, F.1    Ranjard, L.2    Nazaret, S.3    Gourbiere, F.4    Monrozier, L.J.5
  • 97
    • 0031018616 scopus 로고    scopus 로고
    • Cell-specific respiratory activity of aquatic bacteria studied with the tetrazolium reduction method, cyto-clear slides, and image analysis
    • Posch T, Pernthaler J, Alfreider A, Psenner R. 1997. Cell-specific respiratory activity of aquatic bacteria studied with the tetrazolium reduction method, cyto-clear slides, and image analysis. Appl. Environ. Microbiol. 63:867-73
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 867-873
    • Posch, T.1    Pernthaler, J.2    Alfreider, A.3    Psenner, R.4
  • 98
    • 0033046834 scopus 로고    scopus 로고
    • Effect of population density of Pseudomonas fluorescens on production of 2,4-diacetylphloroglucinol in the rhizosphere of wheat
    • Raaijmakers JM, Bonsall RE, Weller DM. 1999. Effect of population density of Pseudomonas fluorescens on production of 2,4-diacetylphloroglucinol in the rhizosphere of wheat. Phytopathology 89:470-75
    • (1999) Phytopathology , vol.89 , pp. 470-475
    • Raaijmakers, J.M.1    Bonsall, R.E.2    Weller, D.M.3
  • 99
    • 0031884447 scopus 로고    scopus 로고
    • Natural plant protection by 2,4-diacetylphloroglucinol-producing Pseudomonas spp. in take-all decline soils
    • Raaijmakers JM, Weller DM. 1998. Natural plant protection by 2,4-diacetylphloroglucinol-producing Pseudomonas spp. in take-all decline soils. Mol. PlantMicrob. Interact. 11:144-52
    • (1998) Mol. Plant-Microb. Interact. , vol.11 , pp. 144-152
    • Raaijmakers, J.M.1    Weller, D.M.2
  • 100
  • 101
    • 0000678741 scopus 로고
    • Dependence on the taxon composition of clone libraries for PCR amplified, naturally occurring 16S rDNA, on the primer pair and the cloning system used
    • Rainey FA, Ward N, Sly LI, Stackebrandt E. 1994. Dependence on the taxon composition of clone libraries for PCR amplified, naturally occurring 16S rDNA, on the primer pair and the cloning system used. Experientia 50:796-97
    • (1994) Experientia , vol.50 , pp. 796-797
    • Rainey, F.A.1    Ward, N.2    Sly, L.I.3    Stackebrandt, E.4
  • 102
    • 0029820730 scopus 로고    scopus 로고
    • Clostridium paradoxum DSM 7308T contains multiple 16S rRNA genes with heterogeneous intervening sequences
    • Rainey FA, Ward-Rainey NL, Stackebrandt E. 1996. Clostridium paradoxum DSM 7308T contains multiple 16S rRNA genes with heterogeneous intervening sequences. Microbiology 142:2087-91
    • (1996) Microbiology , vol.142 , pp. 2087-2091
    • Rainey, F.A.1    Ward-Rainey, N.L.2    Stackebrandt, E.3
  • 103
    • 0034490140 scopus 로고    scopus 로고
    • Bacterial community changes and enrichment of Burkholderia-like bacteria induced by chlorinated benzoates in a peat-forest soil-microcosm
    • Ramirez-Saad HC, Sessitsch A, de Vos WM, Akkermans ADL. 2000. Bacterial community changes and enrichment of Burkholderia-like bacteria induced by chlorinated benzoates in a peat-forest soil-microcosm. Syst. Appl. Microbiol. 23:591-98
    • (2000) Syst. Appl. Microbiol. , vol.23 , pp. 591-598
    • Ramirez-Saad, H.C.1    Sessitsch, A.2    De Vos, W.M.3    Akkermans, A.D.L.4
  • 104
    • 0034466653 scopus 로고    scopus 로고
    • Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking
    • Ranjard L, Brothier E, Nazaret S. 2000. Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking. Appl. Environ. Microbiol. 66:5334-39
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5334-5339
    • Ranjard, L.1    Brothier, E.2    Nazaret, S.3
  • 105
    • 0033924329 scopus 로고    scopus 로고
    • Heterogeneous cell density and genetic structure of bacterial pools associated with various soil microenvironments as determined by enumeration and DNA fingerprinting approach (RISA)
    • Ranjard L, Poly F, Combrisson J, Richaume A, Gourbiere F, et al. 2000. Heterogeneous cell density and genetic structure of bacterial pools associated with various soil microenvironments as determined by enumeration and DNA fingerprinting approach (RISA). Microb. Ecol. 39:263-72
    • (2000) Microb. Ecol. , vol.39 , pp. 263-272
    • Ranjard, L.1    Poly, F.2    Combrisson, J.3    Richaume, A.4    Gourbiere, F.5
  • 106
    • 0035489392 scopus 로고    scopus 로고
    • Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: Biological and methodological variability
    • Ranjard L, Poly F, Lata JC, Mougel C, Thioulouse J, Nazaret S. 2001. Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: Biological and methodological variability. Appl. Environ. Microbiol. 67:4479-87
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4479-4487
    • Ranjard, L.1    Poly, F.2    Lata, J.C.3    Mougel, C.4    Thioulouse, J.5    Nazaret, S.6
  • 107
    • 0034803155 scopus 로고    scopus 로고
    • Quantitative and qualitative microscale distribution of bacteria in soil
    • Ranjard L, Richaume AS. 2001. Quantitative and qualitative microscale distribution of bacteria in soil. Res. Microbiol. 152:707-16
    • (2001) Res. Microbiol. , vol.152 , pp. 707-716
    • Ranjard, L.1    Richaume, A.S.2
  • 108
    • 0034013150 scopus 로고    scopus 로고
    • Microbial diversity at 83 degrees C in Calcite Springs, Yellowstone National Park: Another environment where the aquificales and "Korarchaeota" coexist
    • Reysenbach AL, Ehringer H, Hershberger K. 2000. Microbial diversity at 83 degrees C in Calcite Springs, Yellowstone National Park: Another environment where the aquificales and "Korarchaeota" coexist. Extremophiles 4:61-67
    • (2000) Extremophiles , vol.4 , pp. 61-67
    • Reysenbach, A.L.1    Ehringer, H.2    Hershberger, K.3
  • 110
    • 0034126356 scopus 로고    scopus 로고
    • Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil
    • Ritchie NJ, Schutter ME, Dick RP, Myrold DD. 2000. Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil. Appl. Environ. Microbiol. 66:1668-75
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1668-1675
    • Ritchie, N.J.1    Schutter, M.E.2    Dick, R.P.3    Myrold, D.D.4
  • 111
    • 0031769241 scopus 로고    scopus 로고
    • Effects of bacterial antibiotic production on rhizosphere microbial communities from a culture-independent perspective
    • Robleto EA, Borneman J, Triplett EW. 1998. Effects of bacterial antibiotic production on rhizosphere microbial communities from a culture-independent perspective. Appl. Environ. Microbiol. 64:5020-22
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 5020-5022
    • Robleto, E.A.1    Borneman, J.2    Triplett, E.W.3
  • 112
    • 18844481269 scopus 로고    scopus 로고
    • Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms
    • Rondon MR, August PR, Bettermann AD, Brady SF, Grossman TH, et al. 2000. Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl. Environ. Microbiol. 66:2541-47
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2541-2547
    • Rondon, M.R.1    August, P.R.2    Bettermann, A.D.3    Brady, S.F.4    Grossman, T.H.5
  • 113
    • 0035119312 scopus 로고    scopus 로고
    • Influence of long-term heavy-metal contamination on microbial communities in soil
    • Sandaa R-A, Torsvik V, Enger Ø. 2001. Influence of long-term heavy-metal contamination on microbial communities in soil. Soil Biol. Biochem. 33:287-95
    • (2001) Soil Biol. Biochem. , vol.33 , pp. 287-295
    • Sandaa, R.-A.1    Torsvik, V.2    Enger, Ø.3
  • 114
    • 0032856426 scopus 로고    scopus 로고
    • Analysis of bacterial communities in heavy metalcontaminated soils at different levels of resolution
    • Sandaa R-A, Torsvik V, Enger Ø, Daae FL, Castberg T, et al. 1999. Analysis of bacterial communities in heavy metalcontaminated soils at different levels of resolution. FEMS Microbiol. Ecol. 30:237-51
    • (1999) FEMS Microbiol. Ecol. , vol.30 , pp. 237-251
    • Sandaa, R.-A.1    Torsvik, V.2    Enger, Ø.3    Daae, F.L.4    Castberg, T.5
  • 115
    • 0032933229 scopus 로고    scopus 로고
    • Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments
    • Scala DJ, Kerkhof LJ. 1999. Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments. Appl. Environ. Microb. 65:1681-87
    • (1999) Appl. Environ. Microb. , vol.65 , pp. 1681-1687
    • Scala, D.J.1    Kerkhof, L.J.2
  • 116
    • 0034071156 scopus 로고    scopus 로고
    • Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis
    • Scala DJ, Kerkhof LJ. 2000. Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 66:1980-86
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1980-1986
    • Scala, D.J.1    Kerkhof, L.J.2
  • 117
    • 0034536705 scopus 로고    scopus 로고
    • Culture-independent detection of changes in root-associated bacterial populations of common bean (Phaseolus vulgaris L.) following nitrogen depletion
    • Schallmach E, Minz D, Jurkevitch E. 2000. Culture-independent detection of changes in root-associated bacterial populations of common bean (Phaseolus vulgaris L.) following nitrogen depletion. Microb. Ecol. 40:309-16
    • (2000) Microb. Ecol. , vol.40 , pp. 309-316
    • Schallmach, E.1    Minz, D.2    Jurkevitch, E.3
  • 118
    • 0031033384 scopus 로고    scopus 로고
    • Recovery of Crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments
    • Schleper C, Holben W, Klenk HP. 1997. Recovery of Crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments. Appl. Environ. Microbiol. 63:321-23
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 321-323
    • Schleper, C.1    Holben, W.2    Klenk, H.P.3
  • 119
    • 0035431143 scopus 로고    scopus 로고
    • Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling
    • Schmalenberger A, Schwieger F, Tebbe CC. 2001. Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling. Appl. Environ. Microbiol. 67:3557-63
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3557-3563
    • Schmalenberger, A.1    Schwieger, F.2    Tebbe, C.C.3
  • 120
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand conformation polymorphism for 16s rRNA gene-based microbial community analysis
    • Schwieger F, Tebbe CC. 1998. A new approach to utilize PCR-single-strand conformation polymorphism for 16s rRNA gene-based microbial community analysis. Appl. Environ. Microbiol. 64:4870-76
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 121
    • 0035462376 scopus 로고    scopus 로고
    • Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment
    • Sessitsch A, Weilharter A, Gerzabek MH, Kirchmann H, Kandeler E. 2001. Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment. Appl. Environ. Microbiol. 67:4215-24
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4215-4224
    • Sessitsch, A.1    Weilharter, A.2    Gerzabek, M.H.3    Kirchmann, H.4    Kandeler, E.5
  • 122
    • 0033007256 scopus 로고    scopus 로고
    • Taxonomic diversity of bacteria associated with the roots of field-grown transgenic Brassica napus cv. Quest, compared to the non-transgenic B. napus cv. Excel and B. rapa cv. Parkland
    • Siciliano SD, Germida JJ. 1999. Taxonomic diversity of bacteria associated with the roots of field-grown transgenic Brassica napus cv. Quest, compared to the non-transgenic B. napus cv. Excel and B. rapa cv. Parkland. FEMS Microbiol. Ecol. 29:263-72
    • (1999) FEMS Microbiol. Ecol. , vol.29 , pp. 263-272
    • Siciliano, S.D.1    Germida, J.J.2
  • 123
    • 85047677151 scopus 로고    scopus 로고
    • Differences in the microbial communities associated with the roots of different cultivars of canola and wheat
    • Siciliano SD, Theoret CM, de Freitas JR, Hucl PJ, Germida JJ. 1998. Differences in the microbial communities associated with the roots of different cultivars of canola and wheat. Can. J. Microbiol. 44:844-51
    • (1998) Can. J. Microbiol. , vol.44 , pp. 844-851
    • Siciliano, S.D.1    Theoret, C.M.2    De Freitas, J.R.3    Hucl, P.J.4    Germida, J.J.5
  • 126
    • 0031977257 scopus 로고    scopus 로고
    • Analysis of BIOLOG GN substrate utilization patterns by microbial communities
    • Smalla K, Wachtendorf U, Liu W-T, Forney L. 1998. Analysis of BIOLOG GN substrate utilization patterns by microbial communities. Appl. Environ. Microbiol. 64:1220-25
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1220-1225
    • Smalla, K.1    Wachtendorf, U.2    Liu, W.-T.3    Forney, L.4
  • 127
    • 0035487320 scopus 로고    scopus 로고
    • Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: Plant-dependent enrichment and seasonal shifts revealed
    • Smalla K, Wieland G, Buchner A, Zock A, Parzy J, et al. 2001. Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: Plant-dependent enrichment and seasonal shifts revealed. Appl. Environ. Microbiol. 67:4742-51
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4742-4751
    • Smalla, K.1    Wieland, G.2    Buchner, A.3    Zock, A.4    Parzy, J.5
  • 128
    • 0035344248 scopus 로고    scopus 로고
    • Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
    • Smit E, Leeflang P, Gommans S, van den Broek J, van Mil S, Wernars K. 2001. Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl. Environ. Microbiol. 67:2284-91
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2284-2291
    • Smit, E.1    Leeflang, P.2    Gommans, S.3    Van den Broek, J.4    Van Mil, S.5    Wernars, K.6
  • 129
    • 0027441283 scopus 로고
    • Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
    • Stackebrandt E, Liesack W, Goebel BM. 1993. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. FASEB J. 7:232-36
    • (1993) FASEB J. , vol.7 , pp. 232-236
    • Stackebrandt, E.1    Liesack, W.2    Goebel, B.M.3
  • 130
    • 0030023659 scopus 로고    scopus 로고
    • Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
    • Stein JL, Marsh TL, Wu KY, Shizuya H, DeLong EF. 1996. Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J. Bacteriol. 178:591-99
    • (1996) J. Bacteriol. , vol.178 , pp. 591-599
    • Stein, J.L.1    Marsh, T.L.2    Wu, K.Y.3    Shizuya, H.4    DeLong, E.F.5
  • 131
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki MT, Giovannoni SJ. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-30
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 133
    • 0025256110 scopus 로고
    • Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria
    • Torsvik V, Salte K, Sorheim R, Goksoyr J. 1990. Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria. Appl. Environ. Microbiol. 56:776-81
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 776-781
    • Torsvik, V.1    Salte, K.2    Sorheim, R.3    Goksoyr, J.4
  • 134
    • 0028983870 scopus 로고
    • Molecular phylogenetic analysis of a soil microbial community in a soybean field
    • Ueda T, Suga Y, Matsuguchi T. 1995. Molecular phylogenetic analysis of a soil microbial community in a soybean field. Eur. J. Soil Sci. 46:415-21
    • (1995) Eur. J. Soil Sci. , vol.46 , pp. 415-421
    • Ueda, T.1    Suga, Y.2    Matsuguchi, T.3
  • 135
    • 0031831891 scopus 로고    scopus 로고
    • Microbiological and molecular biological methods for monitoring microbial inoculants and their effects in the soil environment
    • van Elsas JD, Duarte GF, Rosado AS, Smalla K. 1998. Microbiological and molecular biological methods for monitoring microbial inoculants and their effects in the soil environment. J. Microb. Methods 32:133-54
    • (1998) J. Microb. Methods , vol.32 , pp. 133-154
    • Van Elsas, J.D.1    Duarte, G.F.2    Rosado, A.S.3    Smalla, K.4
  • 136
    • 0035344779 scopus 로고    scopus 로고
    • Streamlined method to analyze 16S rRNA gene clone libraries
    • Vergin KL, Rappe MS, Giovannoni SJ. 2001. Streamlined method to analyze 16S rRNA gene clone libraries. Biotechniques 30:938-42
    • (2001) Biotechniques , vol.30 , pp. 938-942
    • Vergin, K.L.1    Rappe, M.S.2    Giovannoni, S.J.3
  • 137
    • 0031927992 scopus 로고    scopus 로고
    • Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales
    • Vergin KL, Urbach E, Stein JL, DeLong EF, Lanoil BD, Giovannoni SJ. 1998. Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales. Appl. Environ. Microbiol. 64:3075-78
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3075-3078
    • Vergin, K.L.1    Urbach, E.2    Stein, J.L.3    DeLong, E.F.4    Lanoil, B.D.5    Giovannoni, S.J.6
  • 138
    • 0029668450 scopus 로고    scopus 로고
    • Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
    • Weidner S, Arnold W, Puhler A. 1996. Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl. Environ. Microbiol. 62:766-71
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 766-771
    • Weidner, S.1    Arnold, W.2    Puhler, A.3
  • 139
    • 0034062087 scopus 로고    scopus 로고
    • Phylogenetic analysis of bacterial communities associated with leaves of the seagrass Halophila stipulacea by a culture-independent smallsubunit rRNA gene approach
    • Weidner S, Arnold W, Stackebrandt E, Puhler A. 2000. Phylogenetic analysis of bacterial communities associated with leaves of the seagrass Halophila stipulacea by a culture-independent smallsubunit rRNA gene approach. Microb. Ecol. 39:22-31
    • (2000) Microb. Ecol. , vol.39 , pp. 22-31
    • Weidner, S.1    Arnold, W.2    Stackebrandt, E.3    Puhler, A.4
  • 140
    • 0030936733 scopus 로고    scopus 로고
    • Applications of molecular ecology in the characterization of uncultured microorganisms associated with human disease
    • Wilson MJ, Weightman AJ, Wade WG. 1997. Applications of molecular ecology in the characterization of uncultured microorganisms associated with human disease. Rev. Med. Microbiol. 8:91-101
    • (1997) Rev. Med. Microbiol. , vol.8 , pp. 91-101
    • Wilson, M.J.1    Weightman, A.J.2    Wade, W.G.3
  • 141
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C. 1987. Bacterial evolution. Microbiol. Rev. 51:221-71
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.1
  • 142
    • 0025300402 scopus 로고
    • Towards a natural system of organisms - Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese CR, Kandler O, Wheelis ML. 1990. Towards a natural system of organisms - Proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87:4576-79
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 143
    • 0029240520 scopus 로고
    • Molecular genetic analysis of the response of three soil microbial communities to the application of 2,4-D
    • Xia XQ, Bollinger J, Ogram A. 1995. Molecular genetic analysis of the response of three soil microbial communities to the application of 2,4-D. Mol. Ecol. 4:17-28
    • (1995) Mol. Ecol. , vol.4 , pp. 17-28
    • Xia, X.Q.1    Bollinger, J.2    Ogram, A.3
  • 144
    • 0033987792 scopus 로고    scopus 로고
    • Rhizosphere microbial community structure in relation to root location and plant iron nutritional status
    • Yang C-H, Crowley DE. 2000. Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl. Environ. Microbiol. 66:345-51
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 345-351
    • Yang, C.-H.1    Crowley, D.E.2
  • 145
    • 0035075371 scopus 로고    scopus 로고
    • 16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophthora infected avocado roots
    • Yang C-H, Crowley DE, Menge JA. 2001. 16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophthora infected avocado roots. FEMS Microbiol. Ecol. 35:129-36
    • (2001) FEMS Microbiol. Ecol. , vol.35 , pp. 129-136
    • Yang, C.-H.1    Crowley, D.E.2    Menge, J.A.3
  • 146
  • 147
    • 0034051909 scopus 로고    scopus 로고
    • Effects of agricultural chemicals on DNA sequence diversity of soil microbial community: A study with RAPD marker
    • Yang Y-H, Yao J, Hu S, Qi Y. 2000. Effects of agricultural chemicals on DNA sequence diversity of soil microbial community: A study with RAPD marker. Microb. Ecol. 39:72-79
    • (2000) Microb. Ecol. , vol.39 , pp. 72-79
    • Yang, Y.-H.1    Yao, J.2    Hu, S.3    Qi, Y.4


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